# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06640.fasta.huge -Q ../query/FLJ00232.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00232, 318 aa vs ./tmplib.10216 library 2210676 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.5019+/-0.00493; mu= 17.8613+/- 0.334 mean_var=139.2670+/-30.023, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.108680 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1825 ( 1203 res) fj04975 (1203) 1215 202.1 1.4e-52 KIAA0595 ( 1666 res) hj02929s1 (1666) 115 29.8 1.4 KIAA1810 ( 579 res) fk03376 ( 579) 105 27.5 2.4 KIAA0940 ( 699 res) hh04894 ( 699) 105 27.6 2.6 KIAA1673 ( 712 res) fg00690 ( 712) 103 27.3 3.3 FLJ00269 ( 1383 res) sj06049 (1383) 104 28.0 4.1 KIAA1282 ( 1117 res) hh04440b(revised) (1117) 101 27.4 5.1 KIAA0913 ( 1881 res) fh07519s2 (1881) 103 28.1 5.3 FLJ00304 ( 381 res) sh05037 ( 381) 95 25.6 5.8 KIAA1930 ( 664 res) fj11193 ( 664) 97 26.3 6.1 KIAA1683 ( 832 res) fh24307 ( 832) 98 26.7 6.1 FLJ00016 ( 349 res) as00016 ( 349) 94 25.4 6.2 FLJ00321 ( 245 res) sh07670 ( 245) 92 24.8 6.4 FLJ00322 ( 659 res) sh08187 ( 659) 96 26.2 6.8 KIAA0306 ( 1451 res) hg00063 (1451) 98 27.1 8 KIAA0755 ( 1093 res) hk04532 (1093) 93 26.1 12 FLJ00384 ( 118 res) sj03287 ( 118) 82 22.7 13 FLJ00395 ( 1105 res) sj06062 (1105) 92 25.9 13 FLJ00170 ( 1310 res) sh07968 (1310) 92 26.1 15 FLJ00042 ( 452 res) as00042 ( 452) 87 24.5 15 FLJ00287 ( 186 res) sh02562 ( 186) 83 23.2 15 KIAA1932 ( 795 res) fj14525 ( 795) 89 25.2 16 KIAA1542 ( 1654 res) hh03408 (1654) 92 26.2 16 KIAA2038 ( 917 res) pj01991 ( 917) 89 25.3 17 KIAA0775 ( 639 res) hk05255 ( 639) 87 24.7 18 KIAA0549 ( 469 res) hh00779 ( 469) 85 24.2 19 KIAA0458 ( 1552 res) ef01252 (1552) 90 25.9 20 KIAA1984 ( 339 res) hk01547 ( 339) 83 23.7 20 FLJ00028 ( 91 res) as00028 ( 91) 77 21.7 20 KIAA1844 ( 367 res) fj12009 ( 367) 83 23.7 21 KIAA0195 ( 1410 res) ha02752 (1410) 89 25.6 21 KIAA2036 ( 1322 res) pf06513 (1322) 88 25.4 23 KIAA1459 ( 853 res) fh16961 ( 853) 85 24.6 25 FLJ00159 ( 567 res) sh06608 ( 567) 83 24.0 26 KIAA0474 ( 782 res) fj12051 ( 782) 84 24.4 27 KIAA1439 ( 561 res) hg01641b ( 561) 82 23.9 29 KIAA1019 ( 2309 res) fg00188s1 (2309) 88 25.8 30 KIAA1522 ( 1044 res) fh14706(revised) (1044) 84 24.6 31 KIAA0991 ( 630 res) hk06065 ( 630) 81 23.8 34 KIAA1575 ( 1010 res) fj01374s1 (1010) 83 24.5 34 FLJ00369 ( 700 res) sh06511 ( 700) 81 23.9 35 KIAA1582 ( 1740 res) fj05982s1 (1740) 85 25.2 36 KIAA1922 ( 370 res) fh11169 ( 370) 78 22.9 36 KIAA1856 ( 1134 res) fh03203 (1134) 83 24.5 36 KIAA0308 ( 2759 res) ee00163 (2759) 86 25.7 40 FLJ00227 ( 196 res) sj06355 ( 196) 74 21.8 41 KIAA0218 ( 777 res) ha02987 ( 777) 80 23.8 41 KIAA2022 ( 1520 res) ff04229 (1520) 83 24.8 42 FLJ00390 ( 322 res) sj04630 ( 322) 76 22.5 42 KIAA2008 ( 793 res) fj04470 ( 793) 80 23.8 42 >>KIAA1825 ( 1203 res) fj04975 (1203 aa) initn: 1202 init1: 1202 opt: 1215 Z-score: 1037.4 bits: 202.1 E(): 1.4e-52 Smith-Waterman score: 1215; 91.981% identity (95.755% similar) in 212 aa overlap (19-230:927-1133) 10 20 30 40 FLJ002 VPRGEVLHPILARADSLLSTLQDRLSQVLRDLEDESTPIVKLGDASIA .. .:::::::::::::::::::::::::: KIAA18 DSPTLSNSGIRATSRTAKQRSGLPPSEEQPTSQRDRLSQVLRDLEDESTPIVKLGDASIA 900 910 920 930 940 950 50 60 70 80 90 100 FLJ002 APFTSKLSSIQCICHVIKQGRCTLVTTLQMFKILALNALILAYSQSVLYLEGVKFSDFQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA18 APFTSKLSSIQCICHVIKQGRCTLVTTLQMFKILALNALILAYSQSVLYLEGVKFSDFQA 960 970 980 990 1000 1010 110 120 130 140 150 160 FLJ002 TLQGLLLAGCFLFISRSKPLKTLSRERPLPNIFNLYTILTVMLQFFVHFLSLVYLYREAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA18 TLQGLLLAGCFLFISRSKPLKTLSRERPLPNIFNLYTILTVMLQFFVHFLSLVYLYREAQ 1020 1030 1040 1050 1060 1070 170 180 190 200 210 220 FLJ002 ARSPEKQEQFVDLYKEFEPSLVNSTVYIMAMAMQMATFAINYKVRPGPCPNIHCLPTQPH ::::::::::::::::::::::::::::::::::::::::::: :: : .. :: . . KIAA18 ARSPEKQEQFVDLYKEFEPSLVNSTVYIMAMAMQMATFAINYK---GP-PFMESLP-ENK 1080 1090 1100 1110 1120 1130 230 240 250 260 270 280 FLJ002 PMKPSVPHPHRARPSWRACPRTSPWCGVWQFHSWPSLACSSAPRPTSTASLASWTSLWSS :. KIAA18 PLVWSLAVSLLAIIGLLLGSSPDFNSQFGLVDIPVEFKLVIAQVLLLDFCLALLADRVLQ 1140 1150 1160 1170 1180 1190 >>KIAA0595 ( 1666 res) hj02929s1 (1666 aa) initn: 150 init1: 78 opt: 115 Z-score: 104.0 bits: 29.8 E(): 1.4 Smith-Waterman score: 115; 34.343% identity (48.485% similar) in 99 aa overlap (216-313:1384-1475) 190 200 210 220 230 240 FLJ002 EPSLVNSTVYIMAMAMQMATFAINYKVRPGPCPNIHCLPTQPHPMKPSVPHPHRARPSWR :: : : :.: . . : . KIAA05 EPLDHRTSSEQADPSAPCLAPSSLLSPEASPCRNDMNTRTPPEPSAKQ----RSMRCYRK 1360 1370 1380 1390 1400 250 260 270 280 290 300 FLJ002 ACPRTSPWCGVWQ-FHSWPSLACSSAPRPTSTASLASWTSLWSSSWSLPRSCSWTSAWRS :: .:: :: .. : . ::. :: :: .: .: :: : :: : . . KIAA05 ACRSASPSSQGWQGRRGRNSRSVSSGSNRTSEASSSSSSS---SSSSRSRSRSLSPPHKR 1410 1420 1430 1440 1450 1460 310 FLJ002 WPTASCSSSWGPRS : .::::: KIAA05 WRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDRRRRYSSYRSH 1470 1480 1490 1500 1510 1520 >>KIAA1810 ( 579 res) fk03376 (579 aa) initn: 93 init1: 58 opt: 105 Z-score: 99.6 bits: 27.5 E(): 2.4 Smith-Waterman score: 105; 28.704% identity (50.000% similar) in 108 aa overlap (214-318:307-404) 190 200 210 220 230 240 FLJ002 EFEPSLVNSTVYIMAMAMQMATFAINYKVRPGPCPNIHCLPTQPHPMKPSVPHPHRARPS : : : . : ::: : .:.: :. KIAA18 SCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHP-PPLLPQP----PN 280 290 300 310 320 330 250 260 270 280 290 300 FLJ002 WRA--CPRTSPWCGVWQFHSWPSLA-CSSAPRPTSTASLASWTSLWSSSWSLPRSCSWTS . : : :. : :: .. .: : :.. .. : :.. : : . . :. KIAA18 FPQGLLPPFPP--GM--FPLWPPMGPFPPVPPPPSSGEAVAPPST-SAALSRPSGAATTT 340 350 360 370 380 310 FLJ002 AWRSWPTASCSSSWGPRS : . ::. ... :: : KIAA18 AAGTSATAASATASGPGSGSAPEAGPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAGFAGL 390 400 410 420 430 440 >>KIAA0940 ( 699 res) hh04894 (699 aa) initn: 42 init1: 42 opt: 105 Z-score: 98.9 bits: 27.6 E(): 2.6 Smith-Waterman score: 105; 27.778% identity (52.778% similar) in 144 aa overlap (181-315:150-275) 160 170 180 190 200 210 FLJ002 LQFFVHFLSLVYLYREAQARSPEKQEQFVDLYKEFEPSLVNSTVYIMAMAMQMATFAINY :...: : :: :. ... :.. .. KIAA09 PSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNF-PHHVNP-VFGGTFSPQIGLAQTQH 120 130 140 150 160 170 220 230 240 250 260 FLJ002 KVRPGPCPNIHCLPTQPHPMKPSVPHPHRARPSWR---ACPRTSPWC---GVWQFHSWPS . .: : : :. :.: .:. : :. :. : : : .:. .. . : KIAA09 HQQPPP-PA----PA-PQPAQPAQP-PQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPI 180 190 200 210 220 230 270 280 290 300 310 FLJ002 LACSSAPRPTST---ASLASWTSLWSSSWSLPRSCSWTSAWRSWPTASCSSSWGPRS . .: : .:. :. :. .: ::::. .: . .:: : : :. :: KIAA09 M--TSKPSSSSAVAAAAAAAAASSASSSWNTHQSVN--AAW-SAP----SNPWGGLQAGR 240 250 260 270 280 KIAA09 DPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTSKSWMEDNAFRTD 290 300 310 320 330 340 >>KIAA1673 ( 712 res) fg00690 (712 aa) initn: 86 init1: 61 opt: 103 Z-score: 97.1 bits: 27.3 E(): 3.3 Smith-Waterman score: 103; 31.111% identity (47.778% similar) in 90 aa overlap (210-291:212-300) 180 190 200 210 220 230 FLJ002 DLYKEFEPSLVNSTVYIMAMAMQMATFAINYKVRPGP----CPNIHCLPTQPHPMKPSVP ..: :: :.: : .: :: .: KIAA16 IINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPL-SQHHPHHPHFQ 190 200 210 220 230 240 240 250 260 270 280 290 FLJ002 HPHRARPSWR---ACPRTSPWCGV-WQFHSWPSLACSSAPRPTSTASLASWTSLWSSSWS : : . . : : :. :. :.. : :: . :. .: : . ::::: KIAA16 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS 250 260 270 280 290 300 300 310 FLJ002 LPRSCSWTSAWRSWPTASCSSSWGPRS KIAA16 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW 310 320 330 340 350 360 >>FLJ00269 ( 1383 res) sj06049 (1383 aa) initn: 80 init1: 54 opt: 104 Z-score: 95.4 bits: 28.0 E(): 4.1 Smith-Waterman score: 104; 29.703% identity (46.535% similar) in 101 aa overlap (213-306:3-94) 190 200 210 220 230 FLJ002 KEFEPSLVNSTVYIMAMAMQMATFAINYKVRPGPCPNIHCLPTQ-------PHPMKPSVP .:: : : :: .. :.: :.: FLJ002 IWKPGSCKNCFCLRSDHQLVAGPPQPRAGSLP 10 20 30 240 250 260 270 280 290 FLJ002 HPHRARPSWRACPRTSPWCGVWQFHSWPSLACSSAPRPTSTASLASWTSLWSSSWSLPRS : : : . : . :: .: : . : .:: .: :: ..:. . .: FLJ002 PPPRLPPRPENCRLEDE--GV---NSSPYSKPTIAVKPTMMSSEAS--DVWTEA-NLSAE 40 50 60 70 80 300 310 FLJ002 CSWTSAWRSWPTASCSSSWGPRS : . :: : FLJ002 VSQV-IWRRAPGKLPLPKQEDAPVVYLGSFRGVQKPAGPSTSPDGNSRCPPAYTMVGLHN 90 100 110 120 130 140 >>KIAA1282 ( 1117 res) hh04440b(revised) (1117 aa) initn: 73 init1: 47 opt: 101 Z-score: 93.7 bits: 27.4 E(): 5.1 Smith-Waterman score: 101; 30.508% identity (40.678% similar) in 118 aa overlap (213-318:948-1051) 190 200 210 220 230 240 FLJ002 KEFEPSLVNSTVYIMAMAMQMATFAINYKVRPGPCPNIHCLPTQPHPMKPS-VPHPHRAR : :::: : : . : . .: . KIAA12 AVTELSEQVLQMREGLQSLRQAVQLVLAPHREGPCPRAS--GEGPCPASTSGLLQPLCVD 920 930 940 950 960 970 250 260 270 280 290 FLJ002 PSWRA-CPRTSPWCGVWQFHSWPSLACSSAPRPTSTASLASWTSLW------SSSWSLPR . . : .: : .:: ::: .: : : :: : :: KIAA12 TGASSYC--LQPPAGSVLSGTWPH------PRPGPPPLMAPWP--WGPPASQSSPW--PR 980 990 1000 1010 1020 300 310 FLJ002 SCS-WTSAWRSWPTAS---CSSSWGPRS . . :::. : : :: :: : : KIAA12 ATAFWTSTSDSEPPASGDLCSEPSTPASPPPSEEGARTGPAEPVSQAEATSTGEPPPGSG 1030 1040 1050 1060 1070 1080 >>KIAA0913 ( 1881 res) fh07519s2 (1881 aa) initn: 104 init1: 77 opt: 103 Z-score: 93.4 bits: 28.1 E(): 5.3 Smith-Waterman score: 110; 26.549% identity (50.442% similar) in 113 aa overlap (186-281:1518-1624) 160 170 180 190 200 210 FLJ002 HFLSLVYLYREAQARSPEKQEQFVDLYKEFEPSLVNSTVYIMAMAMQMATFAINYKVRPG :: : ... . : : . ..... .. :: KIAA09 EGATSCSASGIRAGGEAGRGMPEGRGGPGTEPVTVAAAA-VTAAATVVPVISVGSSLYPG 1490 1500 1510 1520 1530 1540 220 230 240 250 FLJ002 P------CPNIH-------CLPTQP----HPMKPSVPHPHRARPSWRACPRTSPWCGVWQ : :..: :: .: :: .:. : :: ::. : .. :: KIAA09 PGLGHGHSPGLHPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGV-- 1550 1560 1570 1580 1590 1600 260 270 280 290 300 310 FLJ002 FHSWPSLACSSAPRPTSTASLASWTSLWSSSWSLPRSCSWTSAWRSWPTASCSSSWGPRS : :.. .. : .. :::. KIAA09 -H--PAFLGAQYPYSVTPPSLAATAVSFPVPSMAPITVHPYHTEPGLPLPTSVALSSVHP 1610 1620 1630 1640 1650 1660 >>FLJ00304 ( 381 res) sh05037 (381 aa) initn: 59 init1: 59 opt: 95 Z-score: 92.7 bits: 25.6 E(): 5.8 Smith-Waterman score: 95; 28.226% identity (50.806% similar) in 124 aa overlap (149-266:266-381) 120 130 140 150 160 170 FLJ002 FLFISRSKPLKTLSRERPLPNIFNLYTILTVMLQF-FVHFLSLVYLYREAQARSPEKQEQ :.::. :.:. .:: : ..: . : : FLJ003 RNEDSNIDFMVACMQFINIVVHSVENMNFRVFLQYEFTHLGLDLYLERLRLTESDKLQVQ 240 250 260 270 280 290 180 190 200 210 220 230 FLJ002 FVDLYKE--FE-PSLVNSTVYIMAMAMQMATFAINYK-VRPGPCPNIHCLPTQPHPMKPS .. : . :. .:...: :. .: . . :: :: :. : .:. FLJ003 -IQAYLDNIFDVGALLEDTETKNAVLEHMEELQEQVALVRVGPDPS-------PAHHRPT 300 310 320 330 340 240 250 260 270 280 290 FLJ002 VPHPHRARPSWRACPRTSPWCGVWQFHSWP-SLACSSAPRPTSTASLASWTSLWSSSWSL ::: .: : :.. . .:: ::: FLJ003 GHTGHRATQAWALGSRQCYNCALEVLPAWPQSLA 350 360 370 380 300 310 FLJ002 PRSCSWTSAWRSWPTASCSSSWGPRS >>KIAA1930 ( 664 res) fj11193 (664 aa) initn: 117 init1: 70 opt: 97 Z-score: 92.3 bits: 26.3 E(): 6.1 Smith-Waterman score: 100; 33.333% identity (52.000% similar) in 75 aa overlap (187-252:117-186) 160 170 180 190 200 210 FLJ002 FLSLVYLYREAQARSPEKQEQFVDLYKEFEPSLVNSTVYIMAMAMQMATFAINYK----V : :.: . . ....::.. : . KIAA19 TSPTPSGMGLVQTATSPTHPTTSPTHPTTSPILINVSP---STSLELATLSSPSKHSDPT 90 100 110 120 130 140 220 230 240 250 260 FLJ002 RPG----PC-PNIHCLPTQPHPMKPSVPHPHRARPSWRACPRTSPWCGVWQFHSWPSLAC :: :: : . :: :: : .::: :. : . : ::: KIAA19 LPGTDSLPCSPPVSNSYTQADPMAPRTPHPSPAHSSRK--PLTSPAPDPSESTVQSLSPT 150 160 170 180 190 200 270 280 290 300 310 FLJ002 SSAPRPTSTASLASWTSLWSSSWSLPRSCSWTSAWRSWPTASCSSSWGPRS KIAA19 PSPPTPAPQHSDLCLAMAVQTPVPTAAGGSGDRSLEEALGALMAALDDYRGQFPELQGLE 210 220 230 240 250 260 318 residues in 1 query sequences 2210676 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:50 2009 done: Fri Feb 27 10:45:50 2009 Total Scan time: 0.450 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]