# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06869.fasta.huge -Q ../query/FLJ00399.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00399, 165 aa vs ./tmplib.10216 library 2210829 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.3676+/-0.00377; mu= 13.6078+/- 0.254 mean_var=89.1320+/-19.868, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.135849 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0500 ( 213 res) hg00404 ( 213) 128 33.8 0.0059 FLJ00199 ( 383 res) sj03574 ( 383) 108 30.2 0.13 KIAA1651 ( 91 res) fj00563 ( 91) 100 27.8 0.16 KIAA0891 ( 1371 res) hk08201 (1371) 97 28.8 1.2 KIAA1065 ( 665 res) hj05094 ( 665) 89 26.8 2.3 KIAA1662 ( 1653 res) fj03879s1 (1653) 91 27.7 3 KIAA1401 ( 853 res) hk09639 ( 853) 87 26.5 3.5 KIAA0537 ( 698 res) hg03925 ( 698) 84 25.8 4.7 FLJ00390 ( 322 res) sj04630 ( 322) 79 24.4 5.9 KIAA0786 ( 1021 res) hk05490 (1021) 83 25.9 6.8 KIAA1991 ( 712 res) bf00209 ( 712) 81 25.3 7.2 KIAA1419 ( 2464 res) ff01653 (2464) 86 27.0 7.6 KIAA1128 ( 588 res) hg03213 ( 588) 79 24.8 8.4 KIAA0377 ( 1412 res) hh00412 (1412) 82 25.9 9.4 KIAA1624 ( 599 res) fg02331 ( 599) 78 24.6 9.7 KIAA1481 ( 1380 res) fj05724 (1380) 81 25.6 11 KIAA0297 ( 1271 res) hf00325 (1271) 80 25.4 12 KIAA0329 ( 1417 res) hg00872 (1417) 80 25.5 12 KIAA0249 ( 902 res) ha07006 ( 902) 78 24.8 12 FLJ00086 ( 399 res) as00086 ( 399) 74 23.5 13 FLJ00069 ( 579 res) as00069 ( 579) 75 24.0 14 KIAA2013 ( 730 res) bm04064 ( 730) 76 24.3 14 KIAA0464 ( 586 res) hg01093(revised) ( 586) 75 24.0 14 KIAA0979 ( 1483 res) hj07056s1 (1483) 79 25.3 15 KIAA1545 ( 968 res) fj14026s1 ( 968) 77 24.7 15 KIAA0429 ( 666 res) hk07754 ( 666) 75 24.0 16 FLJ00333 ( 437 res) sj04245 ( 437) 72 23.2 18 FLJ00018 ( 1430 res) as00018 (1430) 77 24.9 19 KIAA1407 ( 744 res) fh00894(revised) ( 744) 74 23.9 19 KIAA0418 ( 989 res) hh00988 ( 989) 75 24.3 20 KIAA1467 ( 432 res) fj01477 ( 432) 71 23.0 21 KIAA0638 ( 1384 res) hj03347s1 (1384) 76 24.7 21 KIAA0030 ( 914 res) ha01140 ( 914) 74 24.0 22 KIAA0553 ( 1450 res) pf08859 (1450) 76 24.7 22 KIAA0144 ( 983 res) ha03843 ( 983) 74 24.1 23 KIAA1997 ( 1685 res) bj00195y1 (1685) 76 24.8 24 KIAA0292 ( 1716 res) ha06353 (1716) 76 24.8 24 FLJ00348 ( 778 res) sg00015 ( 778) 72 23.5 26 KIAA0053 ( 666 res) ha01417 ( 666) 71 23.3 27 KIAA1209 ( 1113 res) fg05970 (1113) 73 24.0 28 KIAA1987 ( 357 res) fk04103 ( 357) 68 22.3 28 FLJ00106 ( 379 res) as00106 ( 379) 68 22.3 29 KIAA1261 ( 787 res) hh15855b ( 787) 71 23.4 29 KIAA1984 ( 339 res) hk01547 ( 339) 67 22.1 31 KIAA0945 ( 797 res) hj04760 ( 797) 70 23.2 34 FLJ00056 ( 1310 res) as00056 (1310) 72 23.9 35 KIAA1170 ( 838 res) hg04224(revised) ( 838) 70 23.2 35 KIAA0140 ( 439 res) ha00520 ( 439) 67 22.2 36 KIAA2005 ( 1587 res) eg01633 (1587) 72 24.0 39 KIAA2018 ( 1685 res) ha04734 (1685) 72 24.0 40 >>KIAA0500 ( 213 res) hg00404 (213 aa) initn: 128 init1: 128 opt: 128 Z-score: 146.4 bits: 33.8 E(): 0.0059 Smith-Waterman score: 128; 67.742% identity (80.645% similar) in 31 aa overlap (134-164:142-172) 110 120 130 140 150 160 FLJ003 TLSLLKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHTQQIFLY :::: :::::::::.::. ::.. ::: KIAA05 HSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLGSGNPPASASRVAGSTGACHHAHLIFLS 120 130 140 150 160 170 FLJ003 FF : KIAA05 FIDTGLTVAQAGLELLASGDPPALAYQNAGIIGMNHCAWPSL 180 190 200 210 >>FLJ00199 ( 383 res) sj03574 (383 aa) initn: 169 init1: 81 opt: 108 Z-score: 122.5 bits: 30.2 E(): 0.13 Smith-Waterman score: 108; 39.474% identity (60.526% similar) in 76 aa overlap (81-151:256-325) 60 70 80 90 100 FLJ003 KLLEPFLTPRAATLKAESRPGMAAHACNPSTLGRRGGR----ITRSGLRDQPDQHDETLS ..:.:: . :.:::. :. .: :: FLJ001 LTTSDGNAESLYMQGMELFEEALQKWEQALSVGQRGDSGSTPMPRDGLRN-PETASEPLS 230 240 250 260 270 280 110 120 130 140 150 160 FLJ003 LLKIQKLARPGGTRLE-SQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHTQQIFLYFF . ...:: :: : . . .:::: ::::::.::: : FLJ001 ETESHSVAR-----LECSGAISAQCNLRFLGSRDSPASASQVAGITARVTAEGVCREAGV 290 300 310 320 330 FLJ001 PAAPCLPPAGGVRLHLPRRQHAARPREDPHAAPDRGLAAAAGGR 340 350 360 370 380 >>KIAA1651 ( 91 res) fj00563 (91 aa) initn: 98 init1: 98 opt: 100 Z-score: 120.6 bits: 27.8 E(): 0.16 Smith-Waterman score: 100; 56.667% identity (80.000% similar) in 30 aa overlap (133-162:11-40) 110 120 130 140 150 160 FLJ003 ETLSLLKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHTQQIFL .: :: ::.:::.::::::..: . ::. KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGAYHDAWIIFV 10 20 30 40 FLJ003 YFF KIAA16 ILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH 50 60 70 80 90 >>KIAA0891 ( 1371 res) hk08201 (1371 aa) initn: 91 init1: 69 opt: 97 Z-score: 104.9 bits: 28.8 E(): 1.2 Smith-Waterman score: 97; 30.833% identity (50.000% similar) in 120 aa overlap (48-161:20-135) 20 30 40 50 60 70 FLJ003 WIPSSTSNQGRSGISRLLTVGHLLIHISGNQANKLLEPFLTPRAATLKAESRPGMAAHAC .: :. : :. : . :: : KIAA08 AGCGGLARLSVPCWRIWPQRAAKIAGPGRKRRSPDPDAVADPG--ALWL 10 20 30 40 80 90 100 110 120 130 FLJ003 NPSTLGRRGGRITRSGLRDQPDQHDETLSLLKIQKLA----RPGGTRLESQLLRRLRQEN . . : :: . .: : : ..: : : . : . : : :. : . : . KIAA08 STKRLKMSGG-ASATGPRRGPPGLEDTTSKKKQKDRANQESKDGDPRKETGS-RYVAQAG 50 60 70 80 90 100 140 150 160 FLJ003 L--LGSRRSPASASRVAGTTGTHHHTQQIFLYFF : :.: ::::..:: ::..:.:. .: KIAA08 LEPLASGDPSASASHAAGITGSRHRTRLFFPSSSGSASTPQEEQTKEGACEDPHDLLATP 110 120 130 140 150 160 >>KIAA1065 ( 665 res) hj05094 (665 aa) initn: 108 init1: 54 opt: 89 Z-score: 99.8 bits: 26.8 E(): 2.3 Smith-Waterman score: 89; 25.170% identity (55.782% similar) in 147 aa overlap (10-151:516-660) 10 20 30 FLJ003 VGLKGLIHSTTPISLSFWIPSSTSNQGRS--GISRLLTV . :.... :::. . .: : . :. KIAA10 DNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVN 490 500 510 520 530 540 40 50 60 70 80 90 FLJ003 GHLLIHISGNQANKLLEPFLTPRAATLKAESRPGMAAHACNPSTLGR-RGGRITRSGLRD :. . :..: .:::.: : . .: : . .. .: ::.. ::. . .. KIAA10 LDSLVTRPAPPAQSL-NPFLAPGAPATSAPVNP-FQVNQPQPLTLNQLRGSPVLGTSTSF 550 560 570 580 590 600 100 110 120 130 140 150 FLJ003 QPDQHDETLSLLKIQKLA-RPG-GTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGTH : :.... .. . : .:. :. : . :..:: : ::....::: KIAA10 GPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPF 610 620 630 640 650 660 160 FLJ003 HHTQQIFLYFF KIAA10 LL >>KIAA1662 ( 1653 res) fj03879s1 (1653 aa) initn: 38 init1: 38 opt: 91 Z-score: 97.7 bits: 27.7 E(): 3 Smith-Waterman score: 91; 27.966% identity (47.458% similar) in 118 aa overlap (12-128:522-633) 10 20 30 40 FLJ003 VGLKGLIHSTTPISLSFWIPSSTSNQGRSGISRLLTVGHLL : .:.: :: . : :: :: . KIAA16 DSLHGSPVLIPQVCIGHRDAPRASSPPRHPPSDLAFLAPSPS--PGSSGGSRGSAPPGET 500 510 520 530 540 50 60 70 80 90 100 FLJ003 IHISGNQANKLLEPFLTPRAATLKAESRPGMAAHACNPSTLGRRGGRITRSGLRDQPDQH : . .: . :: :. .:: :. :. . : :: : : .. KIAA16 RHNLEREEYTVLADLPPPRRL---AQRQPGPQAQ-CSSGGRTRSPGRAEVERLFGQERRK 550 560 570 580 590 600 110 120 130 140 150 160 FLJ003 DETLSLLKIQKLARPGG-TRLESQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHTQQI .:. . .. : .: .. .:::::: KIAA16 SEAAGAFQAQDEGRSQQPSQGQSQLLRRQSSPAPSRQVTMLPAKQAELTRRSQADPPHPR 610 620 630 640 650 660 >>KIAA1401 ( 853 res) hk09639 (853 aa) initn: 43 init1: 43 opt: 87 Z-score: 96.5 bits: 26.5 E(): 3.5 Smith-Waterman score: 87; 26.126% identity (57.658% similar) in 111 aa overlap (59-163:37-140) 30 40 50 60 70 80 FLJ003 SGISRLLTVGHLLIHISGNQANKLLEPFLTPRAATLKAESRPGMAAHACNP---STLGRR : ... ....: ::::: .: .. ... KIAA14 CWKRPSREGAGSPAPWRARPLGGDRKRLSWPGSSADSVHARCGMAAHRPGPLKQQNKAHK 10 20 30 40 50 60 90 100 110 120 130 140 FLJ003 GGRITRSGLRDQPDQHDETLSLL--KIQK-LARPGGTRLESQLLRRLRQENLLGSRRSPA ::: : .. . .:. : :..: :.: . ::: :. ..: .:. .: KIAA14 GGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQL-RKQKKEAVLAEKR--- 70 80 90 100 110 120 150 160 FLJ003 SASRVAGTTGTHHHTQQIFLYFF ...: : :.. . :. KIAA14 ---QLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQNFMLLCPRLK 130 140 150 160 170 >>KIAA0537 ( 698 res) hg03925 (698 aa) initn: 38 init1: 38 opt: 84 Z-score: 94.3 bits: 25.8 E(): 4.7 Smith-Waterman score: 84; 27.381% identity (61.905% similar) in 84 aa overlap (40-123:561-637) 10 20 30 40 50 60 FLJ003 TTPISLSFWIPSSTSNQGRSGISRLLTVGHLLIHISGNQANKLLEPFLTPRAATLKAESR .: : : .:. . ...:. ::.. :. KIAA05 NDVMGSSIPSPSPPDPARVTSHSLSCRRKGILKHSSKYSAGTMDPALVSPEMPTLESLSE 540 550 560 570 580 590 70 80 90 100 110 120 FLJ003 PGMAAHACNPSTLGRRGGRITRSGLRDQPDQHDETLSLLKIQKLARPGGTRLESQLLRRL ::. :.. :.: .: . : . :. .....:: .:. ::. :..: KIAA05 PGVPAEG-----LSRSYSRPS-SVISDDSVLSSDSFDLLDLQE-NRPARQRIRSCVSAEN 600 610 620 630 640 130 140 150 160 FLJ003 RQENLLGSRRSPASASRVAGTTGTHHHTQQIFLYFF KIAA05 FLQIQDFEGLQNRPRPQYLKRYRNRLADSSFSLLTDMDDVTQVYKQALEICSKLN 650 660 670 680 690 >>FLJ00390 ( 322 res) sj04630 (322 aa) initn: 34 init1: 34 opt: 79 Z-score: 92.6 bits: 24.4 E(): 5.9 Smith-Waterman score: 79; 31.325% identity (53.012% similar) in 83 aa overlap (66-146:102-180) 40 50 60 70 80 90 FLJ003 TVGHLLIHISGNQANKLLEPFLTPRAATLKAESRPGMAAHACNPSTLGRRGGRITRSGLR : :: . . .:. :: :. : . FLJ003 AHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPGTTQLTQGPA--GRTLGQTQASCPE 80 90 100 110 120 100 110 120 130 140 150 FLJ003 DQP--DQHDETLSLLKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGT .: : : :. :. : :.: :.. ... : : .:: . ::: :. : FLJ003 PRPSMDAVDATMEKLRAQCLSR-GASGIQG-LARFFRQLDRDGSRSLDADEFRQGLAKLG 130 140 150 160 170 180 160 FLJ003 HHHTQQIFLYFF FLJ003 LVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVT 190 200 210 220 230 240 >>KIAA0786 ( 1021 res) hk05490 (1021 aa) initn: 67 init1: 44 opt: 83 Z-score: 91.4 bits: 25.9 E(): 6.8 Smith-Waterman score: 83; 26.016% identity (53.659% similar) in 123 aa overlap (21-140:722-840) 10 20 30 40 50 FLJ003 VGLKGLIHSTTPISLSFWIPSSTSNQGRSGISRLLTVGHLLIHISGNQAN .:: ::: .: . ::: : : ..: : KIAA07 SGTQSRIRRMWNDTVRKQSESSFISGDINSTSTLNQGMTG-NYLLTNPLLRPHGTNNPYN 700 710 720 730 740 750 60 70 80 90 100 FLJ003 KLLEPFLTPRAATLKAESRPGMA-AHACNPSTLGRR--GGRITRSGLRDQPDQHDETLSL :: .. : . . . :: . .: . :.. .: .. : . : .: :. KIAA07 TLLAETVVCNAPSAPVFNSPGHSLNNARDTSAMDTLPLNGNFNNSYSLHKGDYND---SV 760 770 780 790 800 110 120 130 140 150 160 FLJ003 LKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHTQQIFLYFF .. . : .:.... .: ..:: :: .. KIAA07 QVVDCGLSLNDTAFEKMIISELVHNNLRGSSKTHNLELTLPVKPVIGGSSSEDDAIVADA 810 820 830 840 850 860 KIAA07 SSLMHSDNPGLELHHKELEAPLIPQRTHSLLYQPQKKVKSEGTDSYVSQLTAEAEDHLQS 870 880 890 900 910 920 165 residues in 1 query sequences 2210829 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:47 2009 done: Fri Feb 27 11:02:47 2009 Total Scan time: 0.340 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]