# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj06869.fasta.nr -Q ../query/FLJ00399.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00399, 165 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826855 sequences Expectation_n fit: rho(ln(x))= 4.8629+/-0.00018; mu= 8.5750+/- 0.010 mean_var=63.7397+/-12.230, 0's: 35 Z-trim: 38 B-trim: 2 in 1/66 Lambda= 0.160646 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748642|dbj|BAC03458.1| FLJ00399 protein [Homo ( 165) 1077 257.4 6.8e-67 gi|119583598|gb|EAW63194.1| hCG2040615 [Homo sapie ( 106) 260 67.9 4.8e-10 gi|90083377|dbj|BAE90771.1| unnamed protein produc ( 62) 249 65.2 1.9e-09 gi|221041432|dbj|BAH12393.1| unnamed protein produ ( 182) 243 64.2 1.1e-08 gi|34533002|dbj|BAC86569.1| unnamed protein produc ( 314) 239 63.4 3.3e-08 gi|62088182|dbj|BAD92538.1| SLC2A11 protein varian ( 339) 237 63.0 4.8e-08 gi|119598811|gb|EAW78405.1| hCG2021310 [Homo sapie ( 119) 229 60.8 7.7e-08 gi|119619632|gb|EAW99226.1| hCG2004729 [Homo sapie ( 108) 224 59.6 1.6e-07 gi|74217798|dbj|BAE33607.1| unnamed protein produc ( 153) 224 59.7 2.1e-07 gi|148709553|gb|EDL41499.1| mCG1045165 [Mus muscul ( 172) 224 59.8 2.3e-07 gi|12698192|dbj|BAB21923.1| hypothetical protein [ ( 90) 216 57.7 5e-07 gi|60299985|gb|AAX18642.1| cell growth-inhibiting ( 75) 215 57.4 5.1e-07 gi|119605293|gb|EAW84887.1| zinc finger protein 71 ( 519) 216 58.2 2e-06 gi|144953913|ref|NP_872321.2| zinc finger protein ( 555) 216 58.3 2.1e-06 gi|74760994|sp|Q96N38.1|ZN714_HUMAN RecName: Full= ( 555) 216 58.3 2.1e-06 gi|34193526|gb|AAH50468.2| ZNF714 protein [Homo sa ( 661) 216 58.3 2.4e-06 gi|119605292|gb|EAW84886.1| zinc finger protein 71 ( 712) 216 58.3 2.5e-06 gi|119605291|gb|EAW84885.1| zinc finger protein 71 ( 713) 216 58.3 2.5e-06 gi|55732960|emb|CAH93167.1| hypothetical protein [ ( 200) 209 56.3 2.9e-06 gi|90077634|dbj|BAE88497.1| unnamed protein produc ( 81) 199 53.7 7.1e-06 gi|119601536|gb|EAW81130.1| hCG2042967 [Homo sapie ( 71) 198 53.4 7.5e-06 gi|90079411|dbj|BAE89385.1| unnamed protein produc ( 70) 195 52.7 1.2e-05 gi|119569166|gb|EAW48781.1| hCG2031198 [Homo sapie ( 118) 197 53.4 1.3e-05 gi|187609788|gb|ACD13295.1| truncated plakophilin- ( 824) 205 55.8 1.6e-05 gi|187384683|gb|ACD03459.1| plakophilin-2 transcri ( 881) 205 55.9 1.7e-05 gi|187609782|gb|ACD13292.1| plakophilin-2 [Homo sa ( 881) 205 55.9 1.7e-05 gi|187609784|gb|ACD13293.1| plakophilin-2 [Homo sa ( 881) 205 55.9 1.7e-05 gi|119608917|gb|EAW88511.1| plakophilin 2, isoform ( 881) 205 55.9 1.7e-05 gi|20139105|sp|Q99959.1|PKP2_HUMAN RecName: Full=P ( 881) 205 55.9 1.7e-05 gi|66576118|gb|AAY51666.1| unknown [Hylobates lar] ( 43) 189 51.2 2.1e-05 gi|66576116|gb|AAY51665.1| unknown [Pongo pygmaeus ( 43) 189 51.2 2.1e-05 gi|2135416|pir||I38022 hypothetical protein - huma ( 196) 182 50.1 0.00022 gi|6690248|gb|AAF24054.1|AF090942_1 PRO0657 [Homo ( 81) 171 47.2 0.00063 gi|21389158|gb|AAM50513.1|AF456465_1 hypothetical ( 46) 165 45.7 0.0011 gi|98970891|gb|ABF59700.1| survivin isoform 2B+32 ( 51) 163 45.2 0.0016 gi|90081916|dbj|BAE90239.1| unnamed protein produc ( 45) 162 45.0 0.0017 gi|21758515|dbj|BAC05317.1| unnamed protein produc ( 190) 169 47.0 0.0017 gi|43917858|tpg|DAA04671.1| TPA: TPA_inf: olfactor ( 337) 171 47.7 0.0019 gi|38372833|sp|Q8NHA8.1|OR1FC_HUMAN RecName: Full= ( 337) 171 47.7 0.0019 gi|169178346|ref|XP_001720611.1| PREDICTED: hypoth ( 157) 167 46.5 0.002 gi|114676978|ref|XP_001166387.1| PREDICTED: Yip1 i ( 294) 168 46.9 0.0028 gi|90083258|dbj|BAE90711.1| unnamed protein produc ( 49) 159 44.3 0.0029 gi|119617416|gb|EAW97010.1| hCG1818482 [Homo sapie ( 112) 163 45.5 0.003 gi|58567580|gb|AAW78953.1| GekBS107P [Gekko japoni ( 67) 156 43.7 0.0061 gi|15929032|gb|AAH14974.1| YIF1B protein [Homo sap ( 294) 163 45.8 0.0063 gi|218511972|sp|Q86V71.2|ZN429_HUMAN RecName: Full ( 674) 167 47.0 0.0063 >>gi|21748642|dbj|BAC03458.1| FLJ00399 protein [Homo sap (165 aa) initn: 1077 init1: 1077 opt: 1077 Z-score: 1357.2 bits: 257.4 E(): 6.8e-67 Smith-Waterman score: 1077; 100.000% identity (100.000% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 FLJ003 VGLKGLIHSTTPISLSFWIPSSTSNQGRSGISRLLTVGHLLIHISGNQANKLLEPFLTPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 VGLKGLIHSTTPISLSFWIPSSTSNQGRSGISRLLTVGHLLIHISGNQANKLLEPFLTPR 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 AATLKAESRPGMAAHACNPSTLGRRGGRITRSGLRDQPDQHDETLSLLKIQKLARPGGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 AATLKAESRPGMAAHACNPSTLGRRGGRITRSGLRDQPDQHDETLSLLKIQKLARPGGTR 70 80 90 100 110 120 130 140 150 160 FLJ003 LESQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHTQQIFLYFF ::::::::::::::::::::::::::::::::::::::::::::: gi|217 LESQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHTQQIFLYFF 130 140 150 160 >>gi|119583598|gb|EAW63194.1| hCG2040615 [Homo sapiens] (106 aa) initn: 260 init1: 260 opt: 260 Z-score: 336.5 bits: 67.9 E(): 4.8e-10 Smith-Waterman score: 260; 68.182% identity (77.273% similar) in 66 aa overlap (70-135:11-76) 40 50 60 70 80 90 FLJ003 LLIHISGNQANKLLEPFLTPRAATLKAESRPGMAAHACNPSTLGRRGGRITRSGLRDQPD :: .:::::::: : . :.:::: ::.: gi|119 LRLLKNKRFGPGAVAHACNPSTSGGQCGQITRSRDRDHPG 10 20 30 40 100 110 120 130 140 150 FLJ003 QHDETLSLLKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHTQQ :. :: ::::::::: :: :.:::: :::::: : gi|119 QQGETPSLLKIQKLAGCGGMCLQSQLLGRLRQENSLNLGGGGCSEARSCHCSSLVTQQDS 50 60 70 80 90 100 160 FLJ003 IFLYFF gi|119 VSKINK >>gi|90083377|dbj|BAE90771.1| unnamed protein product [M (62 aa) initn: 236 init1: 236 opt: 249 Z-score: 326.0 bits: 65.2 E(): 1.9e-09 Smith-Waterman score: 249; 65.574% identity (83.607% similar) in 61 aa overlap (62-121:2-62) 40 50 60 70 80 90 FLJ003 SRLLTVGHLLIHISGNQANKLLEPFLTPRAATLKAESRPG-MAAHACNPSTLGRRGGRIT :.:.. :: ..:::::::::: .:: :: gi|900 MASLESLPGPGSVVAHACNPSTLGGQGGWIT 10 20 30 100 110 120 130 140 150 FLJ003 RSGLRDQPDQHDETLSLLKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGT .::.::::.:: .:::.::::::: :: :: gi|900 KSGVRDQPSQHGKTLSVLKIQKLAGCGGMRL 40 50 60 160 FLJ003 TGTHHHTQQIFLYFF >>gi|221041432|dbj|BAH12393.1| unnamed protein product [ (182 aa) initn: 191 init1: 191 opt: 243 Z-score: 311.9 bits: 64.2 E(): 1.1e-08 Smith-Waterman score: 243; 62.500% identity (77.778% similar) in 72 aa overlap (63-133:35-105) 40 50 60 70 80 90 FLJ003 RLLTVGHLLIHISGNQANKLLEPFLTPRAATLKAESRPGMAAHACNPSTLGRRGGRITRS .:: ..:::..:::::::::: .:::: :: gi|221 SWPRSGPNLLWALWAPLSHFLQVAEETFGFSLK-RNRPGVVAHACNPSTLGGQGGRIMRS 10 20 30 40 50 60 100 110 120 130 140 150 FLJ003 GLRDQPDQHDETLSLLKIQK-LARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTT : ::. : :. :::::.: :: :: : :.:: :::.:: gi|221 GDRDRLVWHGEAPSLLKIHKRLAGRGGGCLWSRLLGRLRRENGVNLGGGACSEPRSCHCI 70 80 90 100 110 120 160 FLJ003 GTHHHTQQIFLYFF gi|221 PAWATERDSMSKKKKKKKKKRNNPENISGVLLTVSDNSAMQRNESGVDLALVVRYSQGV 130 140 150 160 170 180 >>gi|34533002|dbj|BAC86569.1| unnamed protein product [H (314 aa) initn: 234 init1: 234 opt: 239 Z-score: 303.6 bits: 63.4 E(): 3.3e-08 Smith-Waterman score: 239; 60.563% identity (74.648% similar) in 71 aa overlap (65-135:119-189) 40 50 60 70 80 90 FLJ003 LTVGHLLIHISGNQANKLLEPFLTPRAATLKAESRPGMAAHACNPSTLGRRGGRITRSGL :.. ::. .:.: .::::: :::: :. gi|345 DRPGVCSLRCEDVLSRDFPWVSISFFLLSSKTNRRPAAVAQASSPSTLGGCRWRITRPGV 90 100 110 120 130 140 100 110 120 130 140 150 FLJ003 RDQPDQHDETLSLLKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGTH :::: .:::.::: :.:::: : : :::: :::::: : gi|345 RDQPGRHDEALSLPKMQKLAGCDGGCLWSQLLGRLRQENCLDPGGGGCSEPGSCHCTPAW 150 160 170 180 190 200 160 FLJ003 HHTQQIFLYFF gi|345 ATGRDSVSKTNTIRKCSGGGGELLICEDRLKATPRVALSTSPSRIWLPASLKIVVWHKER 210 220 230 240 250 260 >>gi|62088182|dbj|BAD92538.1| SLC2A11 protein variant [H (339 aa) initn: 195 init1: 195 opt: 237 Z-score: 300.6 bits: 63.0 E(): 4.8e-08 Smith-Waterman score: 237; 54.545% identity (71.429% similar) in 77 aa overlap (46-121:264-339) 20 30 40 50 60 70 FLJ003 SFWIPSSTSNQGRSGISRLLTVGHLLIHISGNQANKLLEPFLTPRAATLKAESRPGMAAH :. .. :. : : . .:: :: .:: gi|620 AIIGTGSCELLTAVVSVSLEGALPPPALWGGTPRSSALNQF-TLQLMVLKCSEGPGAVAH 240 250 260 270 280 290 80 90 100 110 120 130 FLJ003 ACNPSTLGRRGGRITRSGLRDQPDQHDET-LSLLKIQKLARPGGTRLESQLLRRLRQENL ::.::::: ::: :::::.:::: ::.:: .: : .::.: :: :: gi|620 ACKPSTLGGRGGWITRSGVRDQPGQHSETPVSTKKYKKLSRRGGGRL 300 310 320 330 140 150 160 FLJ003 LGSRRSPASASRVAGTTGTHHHTQQIFLYFF >>gi|119598811|gb|EAW78405.1| hCG2021310 [Homo sapiens] (119 aa) initn: 218 init1: 218 opt: 229 Z-score: 297.0 bits: 60.8 E(): 7.7e-08 Smith-Waterman score: 229; 62.121% identity (74.242% similar) in 66 aa overlap (72-137:1-64) 50 60 70 80 90 100 FLJ003 IHISGNQANKLLEPFLTPRAATLKAESRPGMAAHACNPSTLGRRGGRITRSGLRDQPDQH :.::.::::::: :: :::::..::: : gi|119 MVAHTCNPSTLGGRGRWITRSGVQDQPGQD 10 20 30 110 120 130 140 150 160 FLJ003 DETLSLLKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHTQQIF :: ::::::::: :: :: . :. . :: :.: gi|119 GETPSLLKIQKLAGRGGGRLSAT--REAEAENYLNSGGGGFGELRWRHCTPTRATEQDSV 40 50 60 70 80 FLJ003 LYFF gi|119 PKRKSSFCHQQGYLLHFNGQASFLAAMLFEM 90 100 110 >>gi|119619632|gb|EAW99226.1| hCG2004729 [Homo sapiens] (108 aa) initn: 224 init1: 224 opt: 224 Z-score: 291.3 bits: 59.6 E(): 1.6e-07 Smith-Waterman score: 224; 68.519% identity (79.630% similar) in 54 aa overlap (68-121:55-108) 40 50 60 70 80 90 FLJ003 GHLLIHISGNQANKLLEPFLTPRAATLKAESRPGMAAHACNPSTLGRRGGRITRSGLRDQ : :: .:::::::::: :: ::::: .:. gi|119 PQVEAVTPVLKVWIGGPGRSETPTHSYEICSGPGAVAHACNPSTLGARGRRITRSRDQDH 30 40 50 60 70 80 100 110 120 130 140 150 FLJ003 PDQHDETLSLLKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHT :.:: .: ::::::::: :. :: gi|119 PSQHGDTPSLLKIQKLAGCGSRRL 90 100 >>gi|74217798|dbj|BAE33607.1| unnamed protein product [M (153 aa) initn: 220 init1: 220 opt: 224 Z-score: 289.2 bits: 59.7 E(): 2.1e-07 Smith-Waterman score: 224; 56.000% identity (77.333% similar) in 75 aa overlap (7-78:42-116) 10 20 30 FLJ003 VGLKGLIHSTTPISLSFWIPSSTSNQGRSGISRLLT :::. ::::. ::::: ..: ::::. . gi|742 APLTNLRLIELVKGISSGPSHCGQLCFTQYIHSSIAISLSLKIPSSTLSHGISGISKSFP 20 30 40 50 60 70 40 50 60 70 80 90 FLJ003 VGHLLIHISGNQANKLLEPFLTPRAATLKAES--RPGMAAH-ACNPSTLGRRGGRITRSG ::::::. :.:..:::: :::: ::..:. :: : :. . ::. gi|742 VGHLLINTSANHSNKLLTPFLTMRASVLNLESLLRGPMSINSACSSFMFLPPLSHTLKIH 80 90 100 110 120 130 100 110 120 130 140 150 FLJ003 LRDQPDQHDETLSLLKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGT gi|742 SHTYSQGFCLNELANSLSSLVV 140 150 >>gi|148709553|gb|EDL41499.1| mCG1045165 [Mus musculus] (172 aa) initn: 220 init1: 220 opt: 224 Z-score: 288.5 bits: 59.8 E(): 2.3e-07 Smith-Waterman score: 224; 56.000% identity (77.333% similar) in 75 aa overlap (7-78:50-124) 10 20 30 FLJ003 VGLKGLIHSTTPISLSFWIPSSTSNQGRSGISRLLT :::. ::::. ::::: ..: ::::. . gi|148 APLTNFRLIELVKGISSGPSHCGQLCFTQYIHSSIAISLSLKIPSSTLSHGISGISKSFP 20 30 40 50 60 70 40 50 60 70 80 90 FLJ003 VGHLLIHISGNQANKLLEPFLTPRAATLKAES--RPGMAAH-ACNPSTLGRRGGRITRSG ::::::. :.:..:::: :::: ::..:. :: : :. . ::. gi|148 VGHLLINTSANHSNKLLTPFLTMRASVLNLESLLRGPMSINSACSSFMFLPPLSHTLKIH 80 90 100 110 120 130 100 110 120 130 140 150 FLJ003 LRDQPDQHDETLSLLKIQKLARPGGTRLESQLLRRLRQENLLGSRRSPASASRVAGTTGT gi|148 SHTYSPGFCLNELANSLSSLRPSCEKVSPSQSH 140 150 160 170 165 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 01:22:15 2009 done: Sat Feb 28 01:26:33 2009 Total Scan time: 618.810 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]