# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06933.fasta.huge -Q ../query/FLJ00234.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00234, 163 aa vs ./tmplib.10216 library 2210831 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.3572+/-0.00319; mu= 15.2974+/- 0.216 mean_var=56.3740+/-12.205, 0's: 0 Z-trim: 0 B-trim: 9 in 1/39 Lambda= 0.170819 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00015 ( 307 res) as00015 ( 307) 75 26.4 1.4 KIAA0543 ( 1111 res) hg04390 (1111) 79 28.2 1.4 FLJ00159 ( 567 res) sh06608 ( 567) 72 26.1 3.3 KIAA0245 ( 552 res) ha07016 ( 552) 71 25.8 3.8 KIAA0279 ( 2854 res) ff05612 (2854) 76 28.0 4.2 KIAA0357 ( 2992 res) hh00016y2 (2992) 76 28.1 4.3 KIAA0441 ( 702 res) hh00601s1 ( 702) 71 25.9 4.4 KIAA0634 ( 1321 res) hj03064 (1321) 73 26.8 4.5 KIAA0965 ( 489 res) hj06174s1 ( 489) 67 24.7 7 KIAA1038 ( 496 res) fh02273 ( 496) 67 24.7 7.1 KIAA1593 ( 953 res) fj09260 ( 953) 68 25.4 8.7 KIAA1921 ( 545 res) fg00938 ( 545) 66 24.6 8.9 KIAA0608 ( 775 res) hh00889b ( 775) 67 25.0 9.1 KIAA0260 ( 383 res) ha07062 ( 383) 62 23.4 14 KIAA0256 ( 1065 res) eg00512 (1065) 65 24.7 15 FLJ00252 ( 819 res) sj09394 ( 819) 64 24.3 16 FLJ00378 ( 855 res) sj00210 ( 855) 64 24.3 16 KIAA0637 ( 1175 res) hj03305 (1175) 65 24.8 16 KIAA1612 ( 550 res) fj12771 ( 550) 62 23.6 18 KIAA1253 ( 472 res) hh14119a ( 472) 61 23.2 19 KIAA1355 ( 1189 res) fj01564 (1189) 64 24.5 20 KIAA1768 ( 1207 res) ph00672(revised) (1207) 64 24.6 20 KIAA0899 ( 939 res) hk09548s1 ( 939) 63 24.1 20 KIAA1320 ( 567 res) fh13757 ( 567) 61 23.3 21 KIAA1322 ( 702 res) fh13826 ( 702) 61 23.5 24 KIAA0002 ( 555 res) ha00029 ( 555) 60 23.1 25 KIAA1169 ( 857 res) hh10053 ( 857) 61 23.6 27 FLJ00195 ( 639 res) sj02957 ( 639) 60 23.2 27 KIAA0030 ( 914 res) ha01140 ( 914) 61 23.6 28 KIAA1733 ( 509 res) ph00321 ( 509) 59 22.8 28 KIAA1109 ( 3086 res) hh03530s1 (3086) 65 25.4 28 KIAA1807 ( 702 res) fk00712 ( 702) 60 23.2 28 KIAA1120 ( 1024 res) hg02941 (1024) 61 23.7 30 KIAA0239 ( 849 res) ha06313 ( 849) 60 23.3 32 KIAA1354 ( 632 res) fj01502 ( 632) 59 22.9 32 KIAA0815 ( 1640 res) sh06087 (1640) 62 24.2 33 KIAA1757 ( 1409 res) fh19225(revised) (1409) 61 23.9 36 KIAA1302 ( 2016 res) ff04539 (2016) 62 24.4 37 KIAA1075 ( 1505 res) hj06716s1 (1505) 61 23.9 37 KIAA0206 ( 193 res) ha04806 ( 193) 54 21.0 38 KIAA1775 ( 858 res) hk03826 ( 858) 59 23.1 38 KIAA0285 ( 658 res) hh10127a ( 658) 58 22.7 38 KIAA0946 ( 667 res) hj04787 ( 667) 58 22.7 39 KIAA1563 ( 1658 res) fh20460s1 (1658) 61 24.0 39 KIAA1062 ( 1771 res) hj03579s1 (1771) 61 24.0 41 KIAA1440 ( 1377 res) hg02441b (1377) 60 23.6 42 FLJ00156 ( 1887 res) sh06477 (1887) 61 24.1 42 KIAA1220 ( 791 res) fh03489 ( 791) 58 22.8 43 KIAA1762 ( 1460 res) fh27937(revised) (1460) 60 23.7 43 FLJ00321 ( 245 res) sh07670 ( 245) 54 21.1 43 >>FLJ00015 ( 307 res) as00015 (307 aa) initn: 78 init1: 48 opt: 75 Z-score: 103.9 bits: 26.4 E(): 1.4 Smith-Waterman score: 87; 27.407% identity (46.667% similar) in 135 aa overlap (20-154:35-153) 10 20 30 40 FLJ002 LYSLAIFVVITVHFGAQDILTLYELSTPLCWDSKLIGYGSAAQHLPYLT : : :. :: : : :.. :: :. FLJ000 GIRHRNLVTQEEDPVLTVITYMGLSVSLLCLLLAALTFLLC---KAIQNTSTSLHLQ-LS 10 20 30 40 50 60 50 60 70 80 90 100 FLJ002 SLLALKLLQYCLADAWVAEIGLAFNILGMVVFAFATITPLMFTGALFSGVACVNSLAMLT : : : . .: ... : : : . . . . :. ::. .:: FLJ000 LCLFLAHLLFLVAIDQTGHKVLCSIIAGTLHYLYLATLTWMLLEALY---------LFLT 70 80 90 100 110 110 120 130 140 150 160 FLJ002 ASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLIGMLEKADPHLEFQQFPQSP : .. : . ::: . : .: : .::: ... . ::: FLJ000 ARNLTVVNYSSINRFMKKLMFPVGYG---VPAVTVAISAASRPHLYGTPSRCWLQPEKGF 120 130 140 150 160 FLJ000 IWGFLGPVCAIFSVNLVLFLVTLWILKNRLSSLNSEVSTLRNTRMLAFKATAQLFILGCT 170 180 190 200 210 220 >>KIAA0543 ( 1111 res) hg04390 (1111 aa) initn: 65 init1: 41 opt: 79 Z-score: 103.5 bits: 28.2 E(): 1.4 Smith-Waterman score: 79; 34.545% identity (54.545% similar) in 55 aa overlap (14-60:906-959) 10 20 30 FLJ002 LYSLAIFVVITVHFGAQDILTL---YELSTPLCWDSKLI---- :: .:::.: .: : : .. . . KIAA05 QRFDADRPPQLKNMEVFDTMAWPSGIELASFGNDDILNLARYFECSLPTGYSEEALLEEW 880 890 900 910 920 930 40 50 60 70 80 90 FLJ002 -GYGSAAQHLPYLTSLLALKLLQYCLADAWVAEIGLAFNILGMVVFAFATITPLMFTGAL : . :::::. . : : :.: KIAA05 LGLKTIAQHLPF-SMLCKNALAQHCRFPLLSKLMAVVVCVPISTSCCERGFKAMNRIRTD 940 950 960 970 980 990 >>FLJ00159 ( 567 res) sh06608 (567 aa) initn: 41 init1: 41 opt: 72 Z-score: 97.2 bits: 26.1 E(): 3.3 Smith-Waterman score: 72; 31.325% identity (55.422% similar) in 83 aa overlap (30-102:317-393) 10 20 30 40 50 FLJ002 LYSLAIFVVITVHFGAQDILTLYELSTPLCWDSKLIGYGSAAQHLPYLTS--LLALKLL : : :: : :: :: : .:.: :: FLJ001 WKRQRARVVLHWDLYVWDEEQEEMALQLINCPDYKLRPY----QH-SYLRSTVILVLTLL 290 300 310 320 330 340 60 70 80 90 100 FLJ002 QYCLADAWVAEIGLAFNILGMVVFAFATI--------TPLMFTGALFSGVACVNSLAMLT . :: .:.. ... .:. ..:. ... : .. :::: :. : FLJ001 MICLM-IGMAHVLVVYRVLASALFSSSAVPFLEEQVTTAVVVTGALVHYVTIVIMTKINR 350 360 370 380 390 400 110 120 130 140 150 160 FLJ002 ASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLIGMLEKADPHLEFQQFPQSP FLJ001 RVALKLCDFEMPRTFSERESRFTIRFFTLQFFTHFSSLIYIAFILGRINGHPGKSTRLAG 410 420 430 440 450 460 >>KIAA0245 ( 552 res) ha07016 (552 aa) initn: 45 init1: 45 opt: 71 Z-score: 96.0 bits: 25.8 E(): 3.8 Smith-Waterman score: 71; 25.301% identity (57.831% similar) in 83 aa overlap (25-107:369-448) 10 20 30 40 50 FLJ002 LYSLAIFVVITVHFGAQDILTLYELSTPLCWDSKLIGYGSAAQHLPYLTSLLAL :.. . .:.:. :: ::: : :.. . KIAA02 DAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASIFASSRLFFVGSREGHLPDLLSMIHI 340 350 360 370 380 390 60 70 80 90 100 110 FLJ002 KLLQYCLADAWVAEIGLAFNILGMVVFAFATITPLMFTGALFSGVACVNSLAMLTASGIF . .. : . . .:. : .: .: :. . :. .: :.. :..: . KIAA02 E--RFTPIPALLFNCTMALIYL-IVEDVFQLINYFSFSYWFFVGLSVVGQLYLRWKEPKR 400 410 420 430 440 450 120 130 140 150 160 FLJ002 NSLYPATLNFMKGFPFLLGAGLLLIPAVLIGMLEKADPHLEFQQFPQSP KIAA02 PRPLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPL 460 470 480 490 500 510 >>KIAA0279 ( 2854 res) ff05612 (2854 aa) initn: 39 init1: 39 opt: 76 Z-score: 95.3 bits: 28.0 E(): 4.2 Smith-Waterman score: 76; 27.826% identity (51.304% similar) in 115 aa overlap (47-152:2328-2433) 20 30 40 50 60 70 FLJ002 QDILTLYELSTPLCWDSKLIGYGSAAQHLPYLTSLLALKLLQYCLADAWVAEIGLA--FN .:: : :. :. . .: .::: KIAA02 RRENGEILPLKTLTYVALGVTLAALLLTFFFLTLLRILRSNQHGIRRNLTAALGLAQLVF 2300 2310 2320 2330 2340 2350 80 90 100 110 120 FLJ002 ILGM----VVFAFATITPLMFTGALFSGVACVNSLAMLTASGIFNSL---YPATLNFMKG .::. . :: ..:. :. : :. : :.: : .. .: .. . :. KIAA02 LLGINQADLPFACTVIAILLHFLYL-----CTFSWALLEALHLYRALTEVRDVNTGPMR- 2360 2370 2380 2390 2400 2410 130 140 150 160 FLJ002 FPFLLGAGLLLIPAVLIGMLEKADPHLEFQQFPQSP : ..:: : .:: . :. :: KIAA02 FYYMLGWG---VPAFITGLAVGLDPEGYGNPDFCWLSIYDTLIWSFAGPVAFAVSMSVFL 2420 2430 2440 2450 2460 >>KIAA0357 ( 2992 res) hh00016y2 (2992 aa) initn: 72 init1: 45 opt: 76 Z-score: 95.1 bits: 28.1 E(): 4.3 Smith-Waterman score: 78; 32.000% identity (59.000% similar) in 100 aa overlap (7-104:1192-1281) 10 20 30 FLJ002 LYSLAIFVVITVHF-GAQDILTLYELSTPLCWDSKL : :... : ::. . ..: : : :: KIAA03 SLKEITNVQYVSCMNPTAGSFTINPRLQRHFSVFVLSFPGADALSSIY--SIILTQHLKL 1170 1180 1190 1200 1210 40 50 60 70 80 90 FLJ002 IGYGSAAQH-LPYLTSLLALKLLQYCLADAWVAEIGLAFNILGMVVFAFATITPLMFTGA .. .. :. .: : .: :: . : .: ... :. :. . . . ::.: : : KIAA03 GNFPASLQKSIPPLIDL-ALAFHQK-IATTFLPT-GIKFHYI-FNLRDFANI----FQGI 1220 1230 1240 1250 1260 1270 100 110 120 130 140 150 FLJ002 LFSGVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLIGMLEKADPHL :::.: ::.: KIAA03 LFSSVECVKSTWDLIRLYLHESNRVYRDKMVEEKDFDLFDKIQTEVLKKTFDDIEDPVEQ 1280 1290 1300 1310 1320 1330 >>KIAA0441 ( 702 res) hh00601s1 (702 aa) initn: 45 init1: 45 opt: 71 Z-score: 94.9 bits: 25.9 E(): 4.4 Smith-Waterman score: 71; 26.667% identity (52.500% similar) in 120 aa overlap (44-152:52-162) 20 30 40 50 60 70 FLJ002 FGAQDILTLYELSTPLCWDSKLIGYGSAAQHLPYLTSLLALKLLQYCLADAWVAEIGLAF :. .::: . . . : .::: .. KIAA04 DAHSDTVLASFEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSMMFAEEGEIGQSI 30 40 50 60 70 80 80 90 100 110 120 FLJ002 NIL-GMVVFAFATITPLMFTGALFSGVACVNSLAMLTASGIFNSLYP---ATLNFMKGF- .: :::. .:. . ...:: : : .: .. :.. : ..: : .:... KIAA04 YMLEGMVADTFGILLEFIYTGYLH---ASEKSTEQILATAQFLKVYDLVKAYTDFQNNHS 90 100 110 120 130 130 140 150 160 FLJ002 ---PFLL---GAGLLLIPAVLIGMLEKADPHLEFQQFPQSP : : :: ...:: .: :: KIAA04 SPKPTTLNTAGAPVVVIPN------KKNDPPKRKRGRPKKVNTLQEEKSELAAEEEIQLR 140 150 160 170 180 190 >>KIAA0634 ( 1321 res) hj03064 (1321 aa) initn: 64 init1: 41 opt: 73 Z-score: 94.7 bits: 26.8 E(): 4.5 Smith-Waterman score: 73; 25.253% identity (54.545% similar) in 99 aa overlap (45-140:704-800) 20 30 40 50 60 70 FLJ002 GAQDILTLYELSTPLCWDSKLIGYGSAAQHLPYLTSLLALKLLQYCLADAWVAEIGLAFN ::: .. .. .. :. . .: : . KIAA06 SGCYDHSKGIDCSDGFNGGCEQLCLQQTLPLPYDATSSTIFMFCGCVEEYKLAPDGKSCL 680 690 700 710 720 730 80 90 100 110 120 130 FLJ002 ILGMVVFAFATITP-LMFTGALFSGV--ACVNSLAMLTASGIFNSLYPATLNFMKGFPFL .:. : . . : :. .::. . . : .. . .:. . . ::.: :: KIAA06 MLSDVCEGPKCLKPDSKFNDTLFGEMLHGYNNRTQHVNQGQVFQMTFREN-NFIKDFP-Q 740 750 760 770 780 790 140 150 160 FLJ002 LGAGLLLIPAVLIGMLEKADPHLEFQQFPQSP :. :::.:: KIAA06 LADGLLVIPLPVEEQCRGVLSEPLPDLQLLTGDIRYDEAMGYPMVQQWRVRSNLYRVKLS 800 810 820 830 840 850 >>KIAA0965 ( 489 res) hj06174s1 (489 aa) initn: 68 init1: 45 opt: 67 Z-score: 91.2 bits: 24.7 E(): 7 Smith-Waterman score: 67; 26.154% identity (52.308% similar) in 65 aa overlap (101-162:387-442) 80 90 100 110 120 130 FLJ002 LAFNILGMVVFAFATITPLMFTGALFSGVACVNSLAMLTASGIFNSLYPATLNFMKGFPF :..: . ::. . .:: :: KIAA09 YRKVMNWKETLVFPPEVPISEKAKDLILRFCIDSENRIGNSGVEE---------IKGHPF 360 370 380 390 400 140 150 160 FLJ002 LLGAGLLLI---PAVLIGMLEKADPHLEFQQFPQSP . :. : ::.. ... : .:..::.: KIAA09 FEGVDWEHIRERPAAIPIEIKSIDDTSNFDDFPESDILQPVPNTTEPDYKSKDWVFLNYT 410 420 430 440 450 460 KIAA09 YKRFEGLTQRGSIPTYMKAGKL 470 480 >>KIAA1038 ( 496 res) fh02273 (496 aa) initn: 50 init1: 50 opt: 67 Z-score: 91.1 bits: 24.7 E(): 7.1 Smith-Waterman score: 70; 30.000% identity (51.111% similar) in 90 aa overlap (65-150:355-435) 40 50 60 70 80 90 FLJ002 LIGYGSAAQHLPYLTSLLALKLLQYCLADAWVAEIG-LAFNILGMVVFAFATITPLMFTG :.: ......:: .. . . .: : KIAA10 YIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINV--GCIFCG 330 340 350 360 370 380 100 110 120 130 140 150 FLJ002 ALFSGVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAV---LIGMLEKA ::. : . ::: : : :::: :: . ::: ::..:.:. KIAA10 PKVPIKACTRFRARIL---IFNIEIPIT----KGFPVLLHYQTVSEPAVIKRLISVLNKS 390 400 410 420 430 160 FLJ002 DPHLEFQQFPQSP KIAA10 TGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEIK 440 450 460 470 480 490 163 residues in 1 query sequences 2210831 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:52 2009 done: Fri Feb 27 10:45:52 2009 Total Scan time: 0.340 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]