# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj07209.fasta.huge -Q ../query/FLJ00235.ptfa ./tmplib.10216 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
FLJ00235, 141 aa
vs ./tmplib.10216 library
2210853 residues in 2457 sequences
Expectation_n fit: rho(ln(x))= 6.0034+/-0.00588; mu= 9.8752+/- 0.397
mean_var=215.5218+/-48.952, 0's: 0 Z-trim: 0 B-trim: 27 in 1/39
Lambda= 0.087363
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2457)
KIAA0495 ( 209 res) hg00106 ( 209) 125 26.1 0.97
KIAA0269 ( 567 res) ha06751 ( 567) 122 26.5 2.1
KIAA2009 ( 501 res) fj05611 ( 501) 111 25.0 5.2
KIAA0618 ( 1052 res) hg03971 (1052) 115 26.0 5.4
KIAA0191 ( 1516 res) ha02719 (1516) 117 26.5 5.5
KIAA1224 ( 997 res) fh02652 ( 997) 113 25.7 6.3
KIAA1110 ( 740 res) hh04831b(revised) ( 740) 109 25.0 7.6
FLJ00252 ( 819 res) sj09394 ( 819) 109 25.1 8.1
FLJ00378 ( 855 res) sj00210 ( 855) 109 25.1 8.3
KIAA1645 ( 386 res) fg04139 ( 386) 104 23.9 8.4
KIAA0775 ( 639 res) hk05255 ( 639) 107 24.6 8.4
KIAA0886 ( 1233 res) hk07722 (1233) 110 25.5 9.2
FLJ00086 ( 399 res) as00086 ( 399) 103 23.8 9.3
KIAA0915 ( 846 res) hk06275s1 ( 846) 107 24.8 9.8
KIAA1768 ( 1207 res) ph00672(revised) (1207) 109 25.3 9.9
KIAA0613 ( 734 res) hg01088b ( 734) 105 24.5 11
KIAA1994 ( 1117 res) bh00052 (1117) 107 25.0 11
FLJ00053 ( 443 res) as00053 ( 443) 101 23.6 12
KIAA0665 ( 760 res) hk02064 ( 760) 104 24.4 12
FLJ00283 ( 500 res) sh02088 ( 500) 100 23.6 14
KIAA0029 ( 974 res) ha00566 ( 974) 102 24.3 16
KIAA0302 ( 2414 res) hf00409s2 (2414) 107 25.6 17
KIAA0807 ( 1329 res) hk04449(revised) (1329) 102 24.5 19
FLJ00084 ( 641 res) as00084 ( 641) 97 23.4 20
KIAA1868 ( 463 res) fj22550 ( 463) 95 22.9 20
FLJ00037 ( 145 res) as00037 ( 145) 87 21.1 22
KIAA1075 ( 1505 res) hj06716s1 (1505) 101 24.5 22
KIAA1755 ( 1110 res) fg04230(revised) (1110) 99 24.0 23
KIAA1683 ( 832 res) fh24307 ( 832) 97 23.6 23
KIAA0716 ( 1388 res) ah04178 (1388) 100 24.3 23
KIAA0505 ( 200 res) hh00043 ( 200) 88 21.5 24
KIAA0278 ( 460 res) ha06634 ( 460) 93 22.7 24
KIAA1668 ( 791 res) fh11717 ( 791) 96 23.4 25
KIAA1404 ( 1925 res) eg01672 (1925) 101 24.6 25
KIAA1375 ( 546 res) fj04426 ( 546) 93 22.8 26
FLJ00259 ( 659 res) sh04102 ( 659) 94 23.0 27
FLJ00034 ( 1343 res) as00034 (1343) 98 24.0 27
KIAA2013 ( 730 res) bm04064 ( 730) 94 23.1 28
FLJ00366 ( 282 res) sh05203 ( 282) 86 21.4 34
KIAA0218 ( 777 res) ha02987 ( 777) 92 22.9 34
FLJ00104 ( 287 res) as00104 ( 287) 86 21.4 34
KIAA1856 ( 1134 res) fh03203 (1134) 94 23.4 35
KIAA1681 ( 1236 res) fh23697 (1236) 94 23.5 37
KIAA0338 ( 934 res) hg01242 ( 934) 92 23.0 38
KIAA1218 ( 864 res) fh03016 ( 864) 91 22.8 40
KIAA0657 ( 1237 res) hk01859s1 (1237) 93 23.3 40
KIAA2020 ( 572 res) ph01249 ( 572) 88 22.2 42
KIAA1758 ( 1662 res) fh20539(revised) (1662) 94 23.7 43
FLJ00308 ( 233 res) sh05935 ( 233) 82 20.8 44
KIAA0561 ( 1308 res) hh01676 (1308) 92 23.2 45
>>KIAA0495 ( 209 res) hg00106 (209 aa)
initn: 104 init1: 78 opt: 125 Z-score: 106.6 bits: 26.1 E(): 0.97
Smith-Waterman score: 125; 32.174% identity (48.696% similar) in 115 aa overlap (1-104:27-129)
10 20 30
FLJ002 PDHGVRPCAGWQMPNRDHIPMP-PPQAP---AAG
: : ..: : :. .:. ::..: . :
KIAA04 MGAGDGPGAWWVAVGADGGGTLPPTGPGH-LHPAA---CPGGPALPVHRPPRVPGLGSPG
10 20 30 40 50
40 50 60 70 80
FLJ002 VICQAGE---KCPA--SVKCVRDPLPTALGGAGVSLQSQPCGPSTAPRPKAIRALMAVPT
. :. : :: :. :::: .. ...: : :: ::. :
KIAA04 PLTGLGHLPGKAPAPPSAPAGRDPL--------LAREASPGGIVLAPSPKGSAPSEHPPP
60 70 80 90 100
90 100 110 120 130 140
FLJ002 --NHSSHCGPRPPPPTRGSLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH
.::: :: : : .::: :
KIAA04 LGDHSSSDGPTPAPAARGSAHPPRLPRSLPLLLWDNQGPQLPAPQVWGLRHERLCSQGGE
110 120 130 140 150 160
>>KIAA0269 ( 567 res) ha06751 (567 aa)
initn: 135 init1: 89 opt: 122 Z-score: 100.4 bits: 26.5 E(): 2.1
Smith-Waterman score: 122; 28.455% identity (43.902% similar) in 123 aa overlap (16-134:282-402)
10 20 30 40
FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPASVKC
: : : ::: .:: . : .:.
KIAA02 DHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDA-KPIPTCISSATG
260 270 280 290 300 310
50 60 70 80 90 100
FLJ002 VRD--PLPTALGGAGVSLQSQPCGPSTAPRPKAIR--ALMAVPTNHSSHCGPRPPPPTRG
. . : : : . : .. : : : :.:. .: : :. : ::::
KIAA02 LIENRPQSPATGRTPVFVSPTP-PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPAT
320 330 340 350 360
110 120 130 140
FLJ002 SLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH
.:. . : :. :: .: ::.
KIAA02 ALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQ
370 380 390 400 410 420
KIAA02 GLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPA
430 440 450 460 470 480
>>KIAA2009 ( 501 res) fj05611 (501 aa)
initn: 76 init1: 76 opt: 111 Z-score: 93.5 bits: 25.0 E(): 5.2
Smith-Waterman score: 111; 27.344% identity (48.438% similar) in 128 aa overlap (8-131:288-403)
10 20 30
FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQ---
: : :. : : ::: :: . .
KIAA20 SFAHNGNNNNNGNGYTYTAGGEASVPSPDGCPELQ-PTFDPAPAPPPGAPLIWAQFERSP
260 270 280 290 300 310
40 50 60 70 80 90
FLJ002 -AGEKCPASVKCVRDPLPTALGGAGVSLQSQPCGPSTAPRPKAIRALMAVPTNHSSHCGP
.: :.: .: .: ..:. : : : ..:: . :. . .. : :
KIAA20 GGGPAAPVSSSCSS----SASSSASSSSVVFPGGGASAPSNANLGLLVHRRLHPGTSC-P
320 330 340 350 360 370
100 110 120 130 140
FLJ002 RPPPPTRGSLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH
: :: ::.. ... : :.: . : . .::.
KIAA20 RLSPP----LHMAPGAGEHHLARRVR--SDPGGGGLAYAAYANGLGAQLPGLQPSDTSGS
380 390 400 410 420
KIAA20 SSSSSSSSSSSSSSSGLRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPE
430 440 450 460 470 480
>>KIAA0618 ( 1052 res) hg03971 (1052 aa)
initn: 72 init1: 49 opt: 115 Z-score: 93.2 bits: 26.0 E(): 5.4
Smith-Waterman score: 115; 23.134% identity (51.493% similar) in 134 aa overlap (13-139:453-584)
10 20 30 40
FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPAS
.: . .: .:: . . ... : :.
KIAA06 PPLGLSQSGPPGLLPSPSFDSKPPTTLLGLIPAPSMVPATDTKAPPT-LQAETATKPQAT
430 440 450 460 470 480
50 60 70 80 90
FLJ002 VKCVRDPLPTALGGAGVSLQSQPCGPSTAPRPKAIRALMAVPTNHSSHCGPRPP-P----
: . : :. . :.: .:... : .. ....: . : . :: :: :
KIAA06 SAPSPAPKQSFLFGTQNTSPSSPAAPAASSAPPMFKPIFTAPPK-SEKEGPTPPGPSVTA
490 500 510 520 530 540
100 110 120 130 140
FLJ002 --PTRGSLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH
:. .:: :.: .. . ... : : : :.. .: :
KIAA06 TAPSSSSLPTTTSTTAPTFQPVFSSMGPPASVPLPAPFFKQTTTPATAPTTTAPLFTGLA
550 560 570 580 590 600
KIAA06 SATSAVAPITSASPSTDSASKPAFGFGINSVSSSSVSTTTSTATAASQPFLFGAPQASAA
610 620 630 640 650 660
>>KIAA0191 ( 1516 res) ha02719 (1516 aa)
initn: 62 init1: 40 opt: 117 Z-score: 93.0 bits: 26.5 E(): 5.5
Smith-Waterman score: 117; 29.252% identity (50.340% similar) in 147 aa overlap (1-138:1331-1469)
10 20
FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQ-APA-
:..:..: ::: . :: : .:
KIAA01 QPQPFPQNSSQSAAITQPSSQPGSQPKLGPPQQGAQPPHQVQMPLYNFPQSPPAQYSPMH
1310 1320 1330 1340 1350 1360
30 40 50 60 70 80
FLJ002 -AGVICQAGEKCPASVKCVRDP-LPTALGGAGVSLQSQPCGPSTAPRPKAIRALMAVP-T
:.. . . :: .. : . .: :.: .. . :: : : . :.: :
KIAA01 NMGLLPMHPLQIPAPSWPIHGPVIHSAPGSAPSNIGLN--DPSIIFAQPAARPV-AIPNT
1370 1380 1390 1400 1410
90 100 110 120 130 140
FLJ002 NHSSHCGPRPPPPTRGSLHLTSSGAVSLLCARARGLAHPLSCSLA---H-PLLGKTWTCH
.:..: :: :. :..::::. :::. :. : : ::. .:
KIAA01 SHDGH-WPRTVAPN----SLVNSGAVGNSEPGFRGLTPPIPWEHAPRPHFPLVPASWPYG
1420 1430 1440 1450 1460 1470
KIAA01 LHQNFMHQGNARFQPNKPFYTQDRCATRRCRERCPHPPRGNVSE
1480 1490 1500 1510
>>KIAA1224 ( 997 res) fh02652 (997 aa)
initn: 161 init1: 64 opt: 113 Z-score: 92.0 bits: 25.7 E(): 6.3
Smith-Waterman score: 113; 30.000% identity (53.750% similar) in 80 aa overlap (20-95:249-325)
10 20 30 40
FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPASVKCVRDP
:: : :: . . : : . :::. .:
KIAA12 AAAAATATATATATVAALQETQNKDINQYGPMGPTQAYNSQFMNQPGPRGPASMGGSMNP
220 230 240 250 260 270
50 60 70 80 90 100
FLJ002 LPTALGGAGVSLQSQPCGPSTAPRPKAIRAL----MAVPTNHSSHCGPRPPPPTRGSLHL
: : . .... : : . ::: .: . . .: .... ::::
KIAA12 ASMAAGMTPSGMSGPPMG-MNQPRPPGISPFGTHGQRMP--QQTYPGPRPQSLPIQNIKR
280 290 300 310 320 330
110 120 130 140
FLJ002 TSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH
KIAA12 PYPGEPNYGNQQYGPNSQFPTQPGQYPAPNPPRPLTSPNYPGQRMPSQPSSGQYPPPTVN
340 350 360 370 380 390
>>KIAA1110 ( 740 res) hh04831b(revised) (740 aa)
initn: 124 init1: 65 opt: 109 Z-score: 90.5 bits: 25.0 E(): 7.6
Smith-Waterman score: 109; 31.193% identity (48.624% similar) in 109 aa overlap (19-114:637-740)
10 20 30 40
FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPASVK-CVR
.: ::: :.. : :: : . : :.
KIAA11 QHNSGLGAERGAPVPPPDLQPSPPRQQTPPLPPPPPTPPGTLVQCQQIVKVIVLDKPCLA
610 620 630 640 650 660
50 60 70 80 90 100
FLJ002 --DPLPTALGGAGVSLQSQPCGPSTAPRPKAIRALMAVPTNHSSHCGPRPPP---PTR--
.:: . . .: .:. :: . : . : ..:. : ::: : .
KIAA11 RMEPLLSQALSCYTSSSSDSCGSTPLGGPGS-----PVKVTHQPPLPPPPPPYNHPHQFC
670 680 690 700 710 720
110 120 130 140
FLJ002 --GSL---HLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH
::: : :::. ::.
KIAA11 PPGSLLHGHRYSSGSRSLV
730 740
>>FLJ00252 ( 819 res) sj09394 (819 aa)
initn: 104 init1: 65 opt: 109 Z-score: 90.1 bits: 25.1 E(): 8.1
Smith-Waterman score: 109; 37.079% identity (47.191% similar) in 89 aa overlap (20-100:181-255)
10 20 30 40
FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAA---GVICQA-GEKCPASVKC
: ::::::: :. : : ::
FLJ002 PDGPVPGPGPQGAAPEPLGASVQRDSAQGRPCPPPQAPANQPEGASSAAPGSPVPAP-PT
160 170 180 190 200
50 60 70 80 90 100
FLJ002 VRDPLPTALGGAGVSLQSQPCGPSTAP---RPKAIRALMAVPTNHSSHCGPR-PPPPTRG
. ::. : : .: :..: :: :. :: ..: ::: :: : :
FLJ002 KASALPVEQGPA------EPIPPGVASGGLRPDALG-----PT--TAHHGPRHPPKPPRS
210 220 230 240 250
110 120 130 140
FLJ002 SLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH
FLJ002 KATERPGQEPEGPGATPAGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQ
260 270 280 290 300 310
>>FLJ00378 ( 855 res) sj00210 (855 aa)
initn: 104 init1: 65 opt: 109 Z-score: 89.9 bits: 25.1 E(): 8.3
Smith-Waterman score: 109; 37.079% identity (47.191% similar) in 89 aa overlap (20-100:418-492)
10 20 30 40
FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAA---GVICQA-GEKCPASVKC
: ::::::: :. : : ::
FLJ003 PDGPVPGPGPQGAAPEPLGASVQRDSAQGRPCPPPQAPANQPEGASSAAPGSPVPAP-PT
390 400 410 420 430 440
50 60 70 80 90 100
FLJ002 VRDPLPTALGGAGVSLQSQPCGPSTAP---RPKAIRALMAVPTNHSSHCGPR-PPPPTRG
. ::. : : .: :..: :: :. :: ..: ::: :: : :
FLJ003 KASALPVEQGPA------EPIPPGVASGGLRPDALG-----PT--TAHHGPRHPPKPPRS
450 460 470 480 490
110 120 130 140
FLJ002 SLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH
FLJ003 KATERPGQEPEGPGATPAGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQ
500 510 520 530 540 550
>>KIAA1645 ( 386 res) fg04139 (386 aa)
initn: 49 init1: 49 opt: 104 Z-score: 89.8 bits: 23.9 E(): 8.4
Smith-Waterman score: 104; 29.464% identity (52.679% similar) in 112 aa overlap (33-139:6-112)
10 20 30 40 50 60
FLJ002 HGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQA--GEKCPASVKCVRDPLPTALGGAGVS
: : : : : : : : . :: . .
KIAA16 SVSGRCAALLGAGVPDSGKRVAPGLSPSEGGPSHG
10 20 30
70 80 90 100 110
FLJ002 LQSQPCGPSTAPRPKAIRALMA--VPTNHSSHCGPRPPPPTRGSLHLTSSGAVSL-LCAR
: . :::. .:::. . . . .. : : ::: . :. :.: . .: .:
KIAA16 LWLRIPGPSS----RAIRVASGNCILPSMTAPCPP-PPPDPQFVLRGTQSPVHALHFCEG
40 50 60 70 80 90
120 130 140
FLJ002 ARGLAHPLSCSLAHPLLGKTWTCH
:.. ..:: : .. : . :.
KIAA16 AQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQCVTWLQTLPQGRQLLSQGRDLK
100 110 120 130 140 150
141 residues in 1 query sequences
2210853 residues in 2457 library sequences
Tcomplib [34.26] (2 proc)
start: Fri Feb 27 10:45:52 2009 done: Fri Feb 27 10:45:53 2009
Total Scan time: 0.320 Total Display time: 0.030
Function used was FASTA [version 34.26.5 April 26, 2007]