# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj07209.fasta.huge -Q ../query/FLJ00235.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00235, 141 aa vs ./tmplib.10216 library 2210853 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.0034+/-0.00588; mu= 9.8752+/- 0.397 mean_var=215.5218+/-48.952, 0's: 0 Z-trim: 0 B-trim: 27 in 1/39 Lambda= 0.087363 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0495 ( 209 res) hg00106 ( 209) 125 26.1 0.97 KIAA0269 ( 567 res) ha06751 ( 567) 122 26.5 2.1 KIAA2009 ( 501 res) fj05611 ( 501) 111 25.0 5.2 KIAA0618 ( 1052 res) hg03971 (1052) 115 26.0 5.4 KIAA0191 ( 1516 res) ha02719 (1516) 117 26.5 5.5 KIAA1224 ( 997 res) fh02652 ( 997) 113 25.7 6.3 KIAA1110 ( 740 res) hh04831b(revised) ( 740) 109 25.0 7.6 FLJ00252 ( 819 res) sj09394 ( 819) 109 25.1 8.1 FLJ00378 ( 855 res) sj00210 ( 855) 109 25.1 8.3 KIAA1645 ( 386 res) fg04139 ( 386) 104 23.9 8.4 KIAA0775 ( 639 res) hk05255 ( 639) 107 24.6 8.4 KIAA0886 ( 1233 res) hk07722 (1233) 110 25.5 9.2 FLJ00086 ( 399 res) as00086 ( 399) 103 23.8 9.3 KIAA0915 ( 846 res) hk06275s1 ( 846) 107 24.8 9.8 KIAA1768 ( 1207 res) ph00672(revised) (1207) 109 25.3 9.9 KIAA0613 ( 734 res) hg01088b ( 734) 105 24.5 11 KIAA1994 ( 1117 res) bh00052 (1117) 107 25.0 11 FLJ00053 ( 443 res) as00053 ( 443) 101 23.6 12 KIAA0665 ( 760 res) hk02064 ( 760) 104 24.4 12 FLJ00283 ( 500 res) sh02088 ( 500) 100 23.6 14 KIAA0029 ( 974 res) ha00566 ( 974) 102 24.3 16 KIAA0302 ( 2414 res) hf00409s2 (2414) 107 25.6 17 KIAA0807 ( 1329 res) hk04449(revised) (1329) 102 24.5 19 FLJ00084 ( 641 res) as00084 ( 641) 97 23.4 20 KIAA1868 ( 463 res) fj22550 ( 463) 95 22.9 20 FLJ00037 ( 145 res) as00037 ( 145) 87 21.1 22 KIAA1075 ( 1505 res) hj06716s1 (1505) 101 24.5 22 KIAA1755 ( 1110 res) fg04230(revised) (1110) 99 24.0 23 KIAA1683 ( 832 res) fh24307 ( 832) 97 23.6 23 KIAA0716 ( 1388 res) ah04178 (1388) 100 24.3 23 KIAA0505 ( 200 res) hh00043 ( 200) 88 21.5 24 KIAA0278 ( 460 res) ha06634 ( 460) 93 22.7 24 KIAA1668 ( 791 res) fh11717 ( 791) 96 23.4 25 KIAA1404 ( 1925 res) eg01672 (1925) 101 24.6 25 KIAA1375 ( 546 res) fj04426 ( 546) 93 22.8 26 FLJ00259 ( 659 res) sh04102 ( 659) 94 23.0 27 FLJ00034 ( 1343 res) as00034 (1343) 98 24.0 27 KIAA2013 ( 730 res) bm04064 ( 730) 94 23.1 28 FLJ00366 ( 282 res) sh05203 ( 282) 86 21.4 34 KIAA0218 ( 777 res) ha02987 ( 777) 92 22.9 34 FLJ00104 ( 287 res) as00104 ( 287) 86 21.4 34 KIAA1856 ( 1134 res) fh03203 (1134) 94 23.4 35 KIAA1681 ( 1236 res) fh23697 (1236) 94 23.5 37 KIAA0338 ( 934 res) hg01242 ( 934) 92 23.0 38 KIAA1218 ( 864 res) fh03016 ( 864) 91 22.8 40 KIAA0657 ( 1237 res) hk01859s1 (1237) 93 23.3 40 KIAA2020 ( 572 res) ph01249 ( 572) 88 22.2 42 KIAA1758 ( 1662 res) fh20539(revised) (1662) 94 23.7 43 FLJ00308 ( 233 res) sh05935 ( 233) 82 20.8 44 KIAA0561 ( 1308 res) hh01676 (1308) 92 23.2 45 >>KIAA0495 ( 209 res) hg00106 (209 aa) initn: 104 init1: 78 opt: 125 Z-score: 106.6 bits: 26.1 E(): 0.97 Smith-Waterman score: 125; 32.174% identity (48.696% similar) in 115 aa overlap (1-104:27-129) 10 20 30 FLJ002 PDHGVRPCAGWQMPNRDHIPMP-PPQAP---AAG : : ..: : :. .:. ::..: . : KIAA04 MGAGDGPGAWWVAVGADGGGTLPPTGPGH-LHPAA---CPGGPALPVHRPPRVPGLGSPG 10 20 30 40 50 40 50 60 70 80 FLJ002 VICQAGE---KCPA--SVKCVRDPLPTALGGAGVSLQSQPCGPSTAPRPKAIRALMAVPT . :. : :: :. :::: .. ...: : :: ::. : KIAA04 PLTGLGHLPGKAPAPPSAPAGRDPL--------LAREASPGGIVLAPSPKGSAPSEHPPP 60 70 80 90 100 90 100 110 120 130 140 FLJ002 --NHSSHCGPRPPPPTRGSLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH .::: :: : : .::: : KIAA04 LGDHSSSDGPTPAPAARGSAHPPRLPRSLPLLLWDNQGPQLPAPQVWGLRHERLCSQGGE 110 120 130 140 150 160 >>KIAA0269 ( 567 res) ha06751 (567 aa) initn: 135 init1: 89 opt: 122 Z-score: 100.4 bits: 26.5 E(): 2.1 Smith-Waterman score: 122; 28.455% identity (43.902% similar) in 123 aa overlap (16-134:282-402) 10 20 30 40 FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPASVKC : : : ::: .:: . : .:. KIAA02 DHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDA-KPIPTCISSATG 260 270 280 290 300 310 50 60 70 80 90 100 FLJ002 VRD--PLPTALGGAGVSLQSQPCGPSTAPRPKAIR--ALMAVPTNHSSHCGPRPPPPTRG . . : : : . : .. : : : :.:. .: : :. : :::: KIAA02 LIENRPQSPATGRTPVFVSPTP-PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPAT 320 330 340 350 360 110 120 130 140 FLJ002 SLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH .:. . : :. :: .: ::. KIAA02 ALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQ 370 380 390 400 410 420 KIAA02 GLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPA 430 440 450 460 470 480 >>KIAA2009 ( 501 res) fj05611 (501 aa) initn: 76 init1: 76 opt: 111 Z-score: 93.5 bits: 25.0 E(): 5.2 Smith-Waterman score: 111; 27.344% identity (48.438% similar) in 128 aa overlap (8-131:288-403) 10 20 30 FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQ--- : : :. : : ::: :: . . KIAA20 SFAHNGNNNNNGNGYTYTAGGEASVPSPDGCPELQ-PTFDPAPAPPPGAPLIWAQFERSP 260 270 280 290 300 310 40 50 60 70 80 90 FLJ002 -AGEKCPASVKCVRDPLPTALGGAGVSLQSQPCGPSTAPRPKAIRALMAVPTNHSSHCGP .: :.: .: .: ..:. : : : ..:: . :. . .. : : KIAA20 GGGPAAPVSSSCSS----SASSSASSSSVVFPGGGASAPSNANLGLLVHRRLHPGTSC-P 320 330 340 350 360 370 100 110 120 130 140 FLJ002 RPPPPTRGSLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH : :: ::.. ... : :.: . : . .::. KIAA20 RLSPP----LHMAPGAGEHHLARRVR--SDPGGGGLAYAAYANGLGAQLPGLQPSDTSGS 380 390 400 410 420 KIAA20 SSSSSSSSSSSSSSSGLRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPE 430 440 450 460 470 480 >>KIAA0618 ( 1052 res) hg03971 (1052 aa) initn: 72 init1: 49 opt: 115 Z-score: 93.2 bits: 26.0 E(): 5.4 Smith-Waterman score: 115; 23.134% identity (51.493% similar) in 134 aa overlap (13-139:453-584) 10 20 30 40 FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPAS .: . .: .:: . . ... : :. KIAA06 PPLGLSQSGPPGLLPSPSFDSKPPTTLLGLIPAPSMVPATDTKAPPT-LQAETATKPQAT 430 440 450 460 470 480 50 60 70 80 90 FLJ002 VKCVRDPLPTALGGAGVSLQSQPCGPSTAPRPKAIRALMAVPTNHSSHCGPRPP-P---- : . : :. . :.: .:... : .. ....: . : . :: :: : KIAA06 SAPSPAPKQSFLFGTQNTSPSSPAAPAASSAPPMFKPIFTAPPK-SEKEGPTPPGPSVTA 490 500 510 520 530 540 100 110 120 130 140 FLJ002 --PTRGSLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH :. .:: :.: .. . ... : : : :.. .: : KIAA06 TAPSSSSLPTTTSTTAPTFQPVFSSMGPPASVPLPAPFFKQTTTPATAPTTTAPLFTGLA 550 560 570 580 590 600 KIAA06 SATSAVAPITSASPSTDSASKPAFGFGINSVSSSSVSTTTSTATAASQPFLFGAPQASAA 610 620 630 640 650 660 >>KIAA0191 ( 1516 res) ha02719 (1516 aa) initn: 62 init1: 40 opt: 117 Z-score: 93.0 bits: 26.5 E(): 5.5 Smith-Waterman score: 117; 29.252% identity (50.340% similar) in 147 aa overlap (1-138:1331-1469) 10 20 FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQ-APA- :..:..: ::: . :: : .: KIAA01 QPQPFPQNSSQSAAITQPSSQPGSQPKLGPPQQGAQPPHQVQMPLYNFPQSPPAQYSPMH 1310 1320 1330 1340 1350 1360 30 40 50 60 70 80 FLJ002 -AGVICQAGEKCPASVKCVRDP-LPTALGGAGVSLQSQPCGPSTAPRPKAIRALMAVP-T :.. . . :: .. : . .: :.: .. . :: : : . :.: : KIAA01 NMGLLPMHPLQIPAPSWPIHGPVIHSAPGSAPSNIGLN--DPSIIFAQPAARPV-AIPNT 1370 1380 1390 1400 1410 90 100 110 120 130 140 FLJ002 NHSSHCGPRPPPPTRGSLHLTSSGAVSLLCARARGLAHPLSCSLA---H-PLLGKTWTCH .:..: :: :. :..::::. :::. :. : : ::. .: KIAA01 SHDGH-WPRTVAPN----SLVNSGAVGNSEPGFRGLTPPIPWEHAPRPHFPLVPASWPYG 1420 1430 1440 1450 1460 1470 KIAA01 LHQNFMHQGNARFQPNKPFYTQDRCATRRCRERCPHPPRGNVSE 1480 1490 1500 1510 >>KIAA1224 ( 997 res) fh02652 (997 aa) initn: 161 init1: 64 opt: 113 Z-score: 92.0 bits: 25.7 E(): 6.3 Smith-Waterman score: 113; 30.000% identity (53.750% similar) in 80 aa overlap (20-95:249-325) 10 20 30 40 FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPASVKCVRDP :: : :: . . : : . :::. .: KIAA12 AAAAATATATATATVAALQETQNKDINQYGPMGPTQAYNSQFMNQPGPRGPASMGGSMNP 220 230 240 250 260 270 50 60 70 80 90 100 FLJ002 LPTALGGAGVSLQSQPCGPSTAPRPKAIRAL----MAVPTNHSSHCGPRPPPPTRGSLHL : : . .... : : . ::: .: . . .: .... :::: KIAA12 ASMAAGMTPSGMSGPPMG-MNQPRPPGISPFGTHGQRMP--QQTYPGPRPQSLPIQNIKR 280 290 300 310 320 330 110 120 130 140 FLJ002 TSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH KIAA12 PYPGEPNYGNQQYGPNSQFPTQPGQYPAPNPPRPLTSPNYPGQRMPSQPSSGQYPPPTVN 340 350 360 370 380 390 >>KIAA1110 ( 740 res) hh04831b(revised) (740 aa) initn: 124 init1: 65 opt: 109 Z-score: 90.5 bits: 25.0 E(): 7.6 Smith-Waterman score: 109; 31.193% identity (48.624% similar) in 109 aa overlap (19-114:637-740) 10 20 30 40 FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPASVK-CVR .: ::: :.. : :: : . : :. KIAA11 QHNSGLGAERGAPVPPPDLQPSPPRQQTPPLPPPPPTPPGTLVQCQQIVKVIVLDKPCLA 610 620 630 640 650 660 50 60 70 80 90 100 FLJ002 --DPLPTALGGAGVSLQSQPCGPSTAPRPKAIRALMAVPTNHSSHCGPRPPP---PTR-- .:: . . .: .:. :: . : . : ..:. : ::: : . KIAA11 RMEPLLSQALSCYTSSSSDSCGSTPLGGPGS-----PVKVTHQPPLPPPPPPYNHPHQFC 670 680 690 700 710 720 110 120 130 140 FLJ002 --GSL---HLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH ::: : :::. ::. KIAA11 PPGSLLHGHRYSSGSRSLV 730 740 >>FLJ00252 ( 819 res) sj09394 (819 aa) initn: 104 init1: 65 opt: 109 Z-score: 90.1 bits: 25.1 E(): 8.1 Smith-Waterman score: 109; 37.079% identity (47.191% similar) in 89 aa overlap (20-100:181-255) 10 20 30 40 FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAA---GVICQA-GEKCPASVKC : ::::::: :. : : :: FLJ002 PDGPVPGPGPQGAAPEPLGASVQRDSAQGRPCPPPQAPANQPEGASSAAPGSPVPAP-PT 160 170 180 190 200 50 60 70 80 90 100 FLJ002 VRDPLPTALGGAGVSLQSQPCGPSTAP---RPKAIRALMAVPTNHSSHCGPR-PPPPTRG . ::. : : .: :..: :: :. :: ..: ::: :: : : FLJ002 KASALPVEQGPA------EPIPPGVASGGLRPDALG-----PT--TAHHGPRHPPKPPRS 210 220 230 240 250 110 120 130 140 FLJ002 SLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH FLJ002 KATERPGQEPEGPGATPAGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQ 260 270 280 290 300 310 >>FLJ00378 ( 855 res) sj00210 (855 aa) initn: 104 init1: 65 opt: 109 Z-score: 89.9 bits: 25.1 E(): 8.3 Smith-Waterman score: 109; 37.079% identity (47.191% similar) in 89 aa overlap (20-100:418-492) 10 20 30 40 FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAA---GVICQA-GEKCPASVKC : ::::::: :. : : :: FLJ003 PDGPVPGPGPQGAAPEPLGASVQRDSAQGRPCPPPQAPANQPEGASSAAPGSPVPAP-PT 390 400 410 420 430 440 50 60 70 80 90 100 FLJ002 VRDPLPTALGGAGVSLQSQPCGPSTAP---RPKAIRALMAVPTNHSSHCGPR-PPPPTRG . ::. : : .: :..: :: :. :: ..: ::: :: : : FLJ003 KASALPVEQGPA------EPIPPGVASGGLRPDALG-----PT--TAHHGPRHPPKPPRS 450 460 470 480 490 110 120 130 140 FLJ002 SLHLTSSGAVSLLCARARGLAHPLSCSLAHPLLGKTWTCH FLJ003 KATERPGQEPEGPGATPAGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQ 500 510 520 530 540 550 >>KIAA1645 ( 386 res) fg04139 (386 aa) initn: 49 init1: 49 opt: 104 Z-score: 89.8 bits: 23.9 E(): 8.4 Smith-Waterman score: 104; 29.464% identity (52.679% similar) in 112 aa overlap (33-139:6-112) 10 20 30 40 50 60 FLJ002 HGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQA--GEKCPASVKCVRDPLPTALGGAGVS : : : : : : : : . :: . . KIAA16 SVSGRCAALLGAGVPDSGKRVAPGLSPSEGGPSHG 10 20 30 70 80 90 100 110 FLJ002 LQSQPCGPSTAPRPKAIRALMA--VPTNHSSHCGPRPPPPTRGSLHLTSSGAVSL-LCAR : . :::. .:::. . . . .. : : ::: . :. :.: . .: .: KIAA16 LWLRIPGPSS----RAIRVASGNCILPSMTAPCPP-PPPDPQFVLRGTQSPVHALHFCEG 40 50 60 70 80 90 120 130 140 FLJ002 ARGLAHPLSCSLAHPLLGKTWTCH :.. ..:: : .. : . :. KIAA16 AQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQCVTWLQTLPQGRQLLSQGRDLK 100 110 120 130 140 150 141 residues in 1 query sequences 2210853 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:52 2009 done: Fri Feb 27 10:45:53 2009 Total Scan time: 0.320 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]