# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj07209.fasta.nr -Q ../query/FLJ00235.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00235, 141 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7824373 sequences Expectation_n fit: rho(ln(x))= 5.2255+/-0.000194; mu= 7.1076+/- 0.011 mean_var=93.5568+/-17.862, 0's: 46 Z-trim: 51 B-trim: 49 in 2/65 Lambda= 0.132598 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676672|dbj|BAB84988.1| FLJ00235 protein [Homo ( 141) 1043 208.3 3e-52 gi|119629843|gb|EAX09438.1| hCG2008397 [Homo sapie ( 98) 639 130.9 4.3e-29 >>gi|18676672|dbj|BAB84988.1| FLJ00235 protein [Homo sap (141 aa) initn: 1043 init1: 1043 opt: 1043 Z-score: 1094.2 bits: 208.3 E(): 3e-52 Smith-Waterman score: 1043; 100.000% identity (100.000% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPASVKCVRDPLPTALGGAGVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPASVKCVRDPLPTALGGAGVS 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 LQSQPCGPSTAPRPKAIRALMAVPTNHSSHCGPRPPPPTRGSLHLTSSGAVSLLCARARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LQSQPCGPSTAPRPKAIRALMAVPTNHSSHCGPRPPPPTRGSLHLTSSGAVSLLCARARG 70 80 90 100 110 120 130 140 FLJ002 LAHPLSCSLAHPLLGKTWTCH ::::::::::::::::::::: gi|186 LAHPLSCSLAHPLLGKTWTCH 130 140 >>gi|119629843|gb|EAX09438.1| hCG2008397 [Homo sapiens] (98 aa) initn: 639 init1: 639 opt: 639 Z-score: 678.5 bits: 130.9 E(): 4.3e-29 Smith-Waterman score: 639; 100.000% identity (100.000% similar) in 86 aa overlap (13-98:1-86) 10 20 30 40 50 60 FLJ002 PDHGVRPCAGWQMPNRDHIPMPPPQAPAAGVICQAGEKCPASVKCVRDPLPTALGGAGVS :::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MPNRDHIPMPPPQAPAAGVICQAGEKCPASVKCVRDPLPTALGGAGVS 10 20 30 40 70 80 90 100 110 120 FLJ002 LQSQPCGPSTAPRPKAIRALMAVPTNHSSHCGPRPPPPTRGSLHLTSSGAVSLLCARARG :::::::::::::::::::::::::::::::::::::: gi|119 LQSQPCGPSTAPRPKAIRALMAVPTNHSSHCGPRPPPPPGAPCTSRALVL 50 60 70 80 90 130 140 FLJ002 LAHPLSCSLAHPLLGKTWTCH 141 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 23:29:13 2009 done: Fri Feb 27 23:33:10 2009 Total Scan time: 571.410 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]