# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj07427.fasta.huge -Q ../query/FLJ00239.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00239, 717 aa vs ./tmplib.10216 library 2210277 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.4520+/-0.00436; mu= 19.3199+/- 0.295 mean_var=102.2525+/-22.029, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.126834 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00253 ( 349 res) sj09455 ( 349) 109 30.4 0.43 KIAA0210 ( 801 res) ha02313 ( 801) 104 30.0 1.3 KIAA1781 ( 974 res) fg06971(revised) ( 974) 100 29.4 2.4 KIAA0505 ( 200 res) hh00043 ( 200) 92 26.9 2.7 KIAA1085 ( 584 res) hj07690 ( 584) 94 28.0 3.9 KIAA0339 ( 1709 res) hg01304(revised) (1709) 98 29.4 4.3 KIAA1714 ( 1175 res) fj19060y1 (1175) 96 28.8 4.5 KIAA0833 ( 1734 res) hg01719s1 (1734) 97 29.2 4.9 KIAA1880 ( 642 res) ah02167 ( 642) 92 27.7 5.3 KIAA1445 ( 1202 res) fg03469b (1202) 91 27.9 8.5 KIAA1357 ( 836 res) fj01906 ( 836) 89 27.3 8.9 KIAA1780 ( 1192 res) pf01012 (1192) 90 27.7 9.6 KIAA2009 ( 501 res) fj05611 ( 501) 85 26.2 11 KIAA1587 ( 991 res) fj08327 ( 991) 87 27.0 13 KIAA0556 ( 1625 res) hg03732 (1625) 89 27.7 13 FLJ00296 ( 187 res) sh03944 ( 187) 79 24.5 14 FLJ00344 ( 1055 res) sf00013 (1055) 86 26.9 15 KIAA1763 ( 1322 res) fj06918y2 (1322) 87 27.2 15 KIAA1652 ( 179 res) hg02500 ( 179) 78 24.3 15 KIAA0976 ( 386 res) hj06950 ( 386) 81 25.3 16 KIAA1923 ( 832 res) fh21527(revised) ( 832) 84 26.4 17 KIAA0346 ( 1682 res) hg01508s1 (1682) 87 27.4 17 KIAA0570 ( 3412 res) hk03615s2 (3412) 89 28.2 20 KIAA0550 ( 1524 res) hh15909 (1524) 85 26.9 21 KIAA0815 ( 1640 res) sh06087 (1640) 85 27.0 22 KIAA0235 ( 1064 res) ha04677s1 (1064) 83 26.3 22 KIAA0886 ( 1233 res) hk07722 (1233) 83 26.4 24 FLJ00243 ( 503 res) sj07676 ( 503) 79 25.1 24 KIAA0961 ( 530 res) hj05830 ( 530) 79 25.2 24 KIAA0667 ( 1111 res) hk02319 (1111) 82 26.2 25 KIAA1883 ( 1480 res) fh02249 (1480) 83 26.6 26 KIAA1531 ( 1206 res) ph00937 (1206) 82 26.2 27 KIAA1614 ( 1208 res) fj12973 (1208) 82 26.2 27 KIAA0006 ( 773 res) ha01154 ( 773) 80 25.6 27 KIAA0945 ( 797 res) hj04760 ( 797) 80 25.6 27 FLJ00170 ( 1310 res) sh07968 (1310) 82 26.3 28 KIAA1304 ( 1051 res) fh04032 (1051) 81 26.0 28 KIAA0634 ( 1321 res) hj03064 (1321) 82 26.3 28 KIAA1750 ( 431 res) pj02374 ( 431) 77 24.7 28 KIAA1179 ( 1090 res) hh05402a (1090) 81 26.0 28 FLJ00109 ( 332 res) as00109 ( 332) 75 24.2 31 KIAA0246 ( 2589 res) ef02679 (2589) 84 27.1 32 KIAA1438 ( 1075 res) hk07374s1 (1075) 80 25.8 32 KIAA0579 ( 910 res) bg00015 ( 910) 79 25.5 33 KIAA0237 ( 315 res) ha06286 ( 315) 74 23.9 34 KIAA0671 ( 537 res) hk02368 ( 537) 76 24.6 36 KIAA1090 ( 715 res) hk03921a ( 715) 77 25.0 37 FLJ00364 ( 601 res) sh04977 ( 601) 76 24.7 38 FLJ00086 ( 399 res) as00086 ( 399) 74 24.1 39 KIAA0160 ( 803 res) ha03912s1 ( 803) 77 25.1 40 >>FLJ00253 ( 349 res) sj09455 (349 aa) initn: 76 init1: 46 opt: 109 Z-score: 112.9 bits: 30.4 E(): 0.43 Smith-Waterman score: 110; 21.196% identity (53.804% similar) in 184 aa overlap (539-717:84-258) 510 520 530 540 550 560 FLJ002 ENLKVCVSQDYELGSRFAVPFGGFFSCTVGNPLVDPAISRDLGAPSLKKCPGGFSQHPAL :: .: . ..: :.. ::: : :. FLJ002 SIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPH--ASPHLSSIPGGPSPSPVG 60 70 80 90 100 110 570 580 590 600 610 620 FLJ002 ISDGCQVSYCVKSGLFTGGSLPPARLPPFTRPPLMSQAATNTVIVTNSE--NARSWIKDS : . : .:: .. .:.: ...:: .:: .. ... ...: . :... . FLJ002 SPVGSNQS---RSGPISPASIPGSQMPP--QPPGSQSESSSHPALSQSPMPQERGFMAGT 120 130 140 150 160 630 640 650 660 670 680 FLJ002 QTH-QWRLGEPIELRRAMNVIHGDGGGLSGGAAAGVTVGVTTILAVVITLAIYGTR-KFK : . : : . .:. . :: . .: .. . . . .. :: . ... FLJ002 QRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTYG--PQMSQYGPQGNYS 170 180 190 200 210 220 690 700 710 FLJ002 KK-AYQAIEERQSLVPGTAATGDTTYQEQGQSPA . ::... . :: . ... : .::.:. FLJ002 RPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMS 230 240 250 260 270 280 FLJ002 SMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRYATQEHAPGRYAVC 290 300 310 320 330 340 >>KIAA0210 ( 801 res) ha02313 (801 aa) initn: 139 init1: 72 opt: 104 Z-score: 104.3 bits: 30.0 E(): 1.3 Smith-Waterman score: 104; 36.620% identity (54.930% similar) in 71 aa overlap (349-415:710-776) 320 330 340 350 360 370 FLJ002 MLPDLPGPLVKKVSKTVETAVKRYYTFNTYPGCTDL-NSPNFNFQANTDDGSCEGKMTNF ::::: :: .: . .. :::: . KIAA02 HYCSSGQGQGRGQGQSVQMSGAIKQASSETPGCTDRGNSDDFILISKDDDGSS----ARG 680 690 700 710 720 730 380 390 400 410 420 430 FLJ002 SFGGVYQECTQL---SGNRDVLLCQKLEQKNPLTGDFSCPSGYSPVHLLSQIHEEGYNHL ::.: : : ::. .. .:. : ..:: : : : KIAA02 SFSGQAQPLRTLRSTSGKSQAPVCSPLVFSDPLMGPASASSSNPSSSPDDDSSKDSGFTI 740 750 760 770 780 790 440 450 460 470 480 490 FLJ002 ECHRKCTLLVFCKTVCEDVFQVAKAEFRAFWCVASSQVPENSGLLFGGLFSSKSINPMTN KIAA02 VSPLDI 800 >>KIAA1781 ( 974 res) fg06971(revised) (974 aa) initn: 151 init1: 58 opt: 100 Z-score: 99.5 bits: 29.4 E(): 2.4 Smith-Waterman score: 107; 24.265% identity (44.485% similar) in 272 aa overlap (362-596:255-503) 340 350 360 370 380 FLJ002 SKTVETAVKRYYTFNTYPGCTDLNSPNFNFQANTDDGSCEGKMTNFSFGGVYQE--CTQ- : . :.:: . ... : :: : . KIAA17 GYMGDRCQEECPFGSFGFQCSQRCDCHNGGQCSPTTGACECE-PGYK-GPRCQERLCPEG 230 240 250 260 270 280 390 400 410 420 430 440 FLJ002 LSGNRDVLLC----QKLEQKNPLTGDFSCPSGYSPVHLLSQIHEEGYNHLECHRKCTLL- : : .: : .. . .:.:: .: :.: : .. :: :. :: KIAA17 LHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSG-HHCNESCPVGYYGDGCQLPCTCQN 290 300 310 320 330 340 450 460 470 480 FLJ002 -VFCKTV-----CEDVFQVAKAEFRAFWCVASSQVPENSGLLF---GGLFS--------S . :... : :. .: : :.:.. :. :.. :: : . KIAA17 GADCHSITGGCTCAPGFM---GEVCAVSCAAGTYGPNCSSICSCNNGGTCSPVDGSCTCK 350 360 370 380 390 490 500 510 520 530 540 FLJ002 KSINPMTNAQSCPAGYFPLRLFENLKVCVSQDYELGSRFAVPFGGFFSCTVGNPLVDPAI .. . . . ::.: . : :. :. . :. . :. : ::: : KIAA17 EGWQGLDCTLPCPSGTWGLNCNES---CTCAN---GAACS-PIDGSCSCTPGW------- 400 410 420 430 440 550 560 570 580 590 FLJ002 SRDLGAPSLKKCPGGF-----SQH-PALISDGCQ--VSYCVKSGLFTG----GSLPPARL :: :: : :.: .:::. ...: . .:: .. ::.: KIAA17 ---LGDTCELPCPDGTFGLNCSEHCDCSHADGCDPVTGHCCCLAGWTGIRCDSTCPPGRW 450 460 470 480 490 500 600 610 620 630 640 650 FLJ002 PPFTRPPLMSQAATNTVIVTNSENARSWIKDSQTHQWRLGEPIELRRAMNVIHGDGGGLS : KIAA17 GPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRP 510 520 530 540 550 560 >>KIAA0505 ( 200 res) hh00043 (200 aa) initn: 112 init1: 55 opt: 92 Z-score: 98.5 bits: 26.9 E(): 2.7 Smith-Waterman score: 92; 29.268% identity (45.528% similar) in 123 aa overlap (540-659:86-191) 510 520 530 540 550 560 FLJ002 NLKVCVSQDYELGSRFAVPFGGFFSCTVGNPL-VDPAISRDLGAPSLKKCPGGFSQHPAL :: .: .: : : : . : .:. : : KIAA05 QPGMGSRPCACPASTRHSSPPLPSFSLPTFPLPSSPLLSAPLLFPPLPSAP--LSSLPLL 60 70 80 90 100 110 570 580 590 600 610 620 FLJ002 ISDGCQVSYCVKSGLFTGGSLP--PARLPPFTRPPLMSQAATNTVIVTNSENARSWIKDS : . : :: . :: : ::: ::: :. . .... . . . .. KIAA05 -------SLPLPSPLFPSLPLPSFPFPSPPFPSPPLPSSPLPSPLLLSPPLTCLTLLCQG 120 130 140 150 160 630 640 650 660 670 680 FLJ002 QTHQWRLGEPIELRRAMNVIHGDGGGLSGGAAAGVTVGVTTILAVVITLAIYGTRKFKKK . : :. :: : :::: :: KIAA05 PGQGW----PLTLRSKWVW----GPGLSGIRAARQGLLQEQA 170 180 190 200 690 700 710 FLJ002 AYQAIEERQSLVPGTAATGDTTYQEQGQSPA >>KIAA1085 ( 584 res) hj07690 (584 aa) initn: 62 init1: 62 opt: 94 Z-score: 95.8 bits: 28.0 E(): 3.9 Smith-Waterman score: 94; 32.381% identity (47.619% similar) in 105 aa overlap (469-567:259-359) 440 450 460 470 480 490 FLJ002 KCTLLVFCKTVCEDVFQVAKAEFRAFWCVASSQVPENSGLLFGGLFSSKSINPMTNAQSC ::::: :.: : : : . . ..:: KIAA10 SQMHINPANKSLPPTFGPATLFNHFSSLFDSSQVPANQGWGDGPLSSRVATDASFTVQSA 230 240 250 260 270 280 500 510 520 530 540 550 FLJ002 PAGYFPLRLFENLKVCVSQDYELGSRFAVPFGGFFSCTVGNPLVDPAISR--DLGAP--S : : .::.. : . : : . :: : .::. : . .:: : KIAA10 FLGNSVLGHLENMH----PDNSKAPGFRPPSQRVSTSPVGLPSIDPSGSSPSSSSAPLAS 290 300 310 320 330 340 560 570 580 590 600 610 FLJ002 LKKCPGG--FSQHPALISDGCQVSYCVKSGLFTGGSLPPARLPPFTRPPLMSQAATNTVI .. :: : : :: KIAA10 FSGIPGTRVFLQGPAPVGTPSFNRQHFSPHPWTSASNSCDSPIPSVSSGSSSPLSATSAP 350 360 370 380 390 400 >>KIAA0339 ( 1709 res) hg01304(revised) (1709 aa) initn: 144 init1: 70 opt: 98 Z-score: 95.0 bits: 29.4 E(): 4.3 Smith-Waterman score: 98; 34.783% identity (48.913% similar) in 92 aa overlap (521-601:523-608) 500 510 520 530 540 FLJ002 PMTNAQSCPAGYFPLRLFENLKVCVSQDYELGSR---FAVPFG-GFFSCTVGNPLVDPAI ::.: :: : : :: : :: KIAA03 RIEMLLKEQRSKFSFLASDTEEEEENSSMVLGARDTGSEVPSGSGHGPCT---PPPAPAN 500 510 520 530 540 550 560 570 580 590 FLJ002 SRDLGAPSLKKCPGGFSQHPALISDG-CQVSYCVKSGLFT------GGSLPPARLPPFTR .:. ::. . ::. . : ..: :.: : .. . ::: ::: :: KIAA03 FEDV-APTGSGEPGATRESPK--ANGQNQASPCSSGDDMEISDDDRGGSPPPAPTPPQQP 550 560 570 580 590 600 600 610 620 630 640 650 FLJ002 PPLMSQAATNTVIVTNSENARSWIKDSQTHQWRLGEPIELRRAMNVIHGDGGGLSGGAAA :: KIAA03 PPPPPPPPPPPPYLASLPLGYPPHQPAYLLPPRPDGPPPPEYPPPPPPPPHIYDFVNSLE 610 620 630 640 650 660 >>KIAA1714 ( 1175 res) fj19060y1 (1175 aa) initn: 122 init1: 69 opt: 96 Z-score: 94.7 bits: 28.8 E(): 4.5 Smith-Waterman score: 96; 30.435% identity (52.174% similar) in 69 aa overlap (518-582:544-608) 490 500 510 520 530 540 FLJ002 SINPMTNAQSCPAGYFPLRLFENLKVCVSQDYELGSRFAVPFGGFFSC----TVGNPLVD : :: :.::: .: :.:. :: KIAA17 NVVVDDDTAVQPLVAVLIDSGDTYYFGGCLDNSSGSGCKSPLGGFQGCLRLITIGDKAVD 520 530 540 550 560 570 550 560 570 580 590 600 FLJ002 PAISRDLGAPSLKKCPGGFSQHPALISDGCQVSYCVKSGLFTGGSLPPARLPPFTRPPLM : . .. . :.. .. :.: : ::: ..: KIAA17 PILVQQGALGSFRD----LQIDSCGITDRCLPSYCEHGGECSQSWDTFSCDCLGTGYTGE 580 590 600 610 620 610 620 630 640 650 660 FLJ002 SQAATNTVIVTNSENARSWIKDSQTHQWRLGEPIELRRAMNVIHGDGGGLSGGAAAGVTV KIAA17 TCHSSLYEQSCEAHKHRGNPSGLYYIDADGSGPLGPFLVYCNMTADAAWTVVQHGGPDAV 630 640 650 660 670 680 >>KIAA0833 ( 1734 res) hg01719s1 (1734 aa) initn: 111 init1: 82 opt: 97 Z-score: 94.0 bits: 29.2 E(): 4.9 Smith-Waterman score: 100; 22.835% identity (52.362% similar) in 254 aa overlap (205-436:722-965) 180 190 200 210 220 230 FLJ002 ELLDISDRLENNQTRMATYLAELLVLNYGTHVTTSVDAGAALIQEDHLRASFLQDSQSSR :: : ... ..: . ...:.: ...... KIAA08 THSSLSDSGGTFVMPTVKTEASSQTSSCSGHVETRIESTSSL-HLMQFQANF--QAMTAE 700 710 720 730 740 240 250 260 270 280 290 FLJ002 SAVTASAGLAFQNT-VNFKFEENYTSQNVLTKSYLSNRTNSRVQSIGGVPFYPGITLQAW . :: .. : ... : .: : : .. ::. .::. ..: ::::. :: ..:. KIAA08 GEVTMETSQAAEGSEVLLKSGE---LQACSSEHYLQPETNGVIRSAGGVPILPGNVVQGL 750 760 770 780 790 800 300 310 320 330 340 FLJ002 QQGITNHLVAIDRSGLPL-HFFIN-PNMLPDLPGPL--VKKVSKTV---------ETAVK : . : : :: :. :.. :: . . :. :.:. ::.. KIAA08 YPVAQPSLGNASNMELSLDHFDISFSNQFSDLINDFISVEGGSSTIYGHQLVSGDSTALS 810 820 830 840 850 860 350 360 370 380 390 FLJ002 R-----YYTFNTYPGCTDLNSPNFNFQANTDDGSCEGKMTNFSFGGVYQECTQLSGNRDV . :. : ::. :.. . .: :: ..... : . . :.. . KIAA08 QSEDGARAPFTQAEMCLPCCSPQ---QGSLQLSSSEGGASTMAYMHVAEVVSAASAQGTL 870 880 890 900 910 920 400 410 420 430 440 450 FLJ002 LLCQ---KLEQKNPLTGDFSCPSGYSPVHLLSQIHEEGYNHLECHRKCTLLVFCKTVCED . : .. . . . ..: : : : :.. .:. :. : KIAA08 GMLQQSGRVFMVTDYSPEWSYPEGGVKV-LITGPWQEASNNYSCLFDQISVPASLIQPGV 930 940 950 960 970 980 460 470 480 490 500 510 FLJ002 VFQVAKAEFRAFWCVASSQVPENSGLLFGGLFSSKSINPMTNAQSCPAGYFPLRLFENLK KIAA08 LRCYCPAHDTGLVTLQVAFNNQIISNSVVFEYKARALPTLPSSQHDWLSLDDNQFRMSIL 990 1000 1010 1020 1030 1040 >>KIAA1880 ( 642 res) ah02167 (642 aa) initn: 42 init1: 42 opt: 92 Z-score: 93.4 bits: 27.7 E(): 5.3 Smith-Waterman score: 92; 25.175% identity (53.846% similar) in 143 aa overlap (449-582:220-357) 420 430 440 450 460 470 FLJ002 PVHLLSQIHEEGYNHLECHRKCTLLVFCKTVCEDVFQVAKAE-FRAF--WCVASSQVPEN : .: : . . . : :. :: .:. :: KIAA18 MCCMFMDRNAQEVLSSEGFLSLSKTALLNIVLRDSFAAPEKDIFLALLNWCKHNSK--EN 190 200 210 220 230 240 480 490 500 510 520 530 FLJ002 SGLLFGGL-FSSKSINPMTNAQSCPAGYF-PLRLFENLKV-CVSQDYELGSR-FAVPFGG . .. .. . :.. . :. :.: . : ... .:: :.:..:. : . .: . KIAA18 HAEIMQAVRLPLMSLTELLNVVR-PSGLLSPDAILDAIKVRSESRDMDLNYRGMLIPEEN 250 260 270 280 290 300 540 550 560 570 580 FLJ002 FFSCTVGNPLVDPAISRDL--GAPSLKKCPGGFSQHPALISDGCQVSYCVKSGLFTGGSL . . : .: .. : : . :::.:: :.: :. . .: : KIAA18 IATMKYGAQVVKGELKSALLDGDTQNYDLDHGFSRHP--IDDDCRSGIEIKLGQPSIINH 310 320 330 340 350 360 590 600 610 620 630 640 FLJ002 PPARLPPFTRPPLMSQAATNTVIVTNSENARSWIKDSQTHQWRLGEPIELRRAMNVIHGD KIAA18 IRILLWDRDSRSYSYFIEVSMDELDWVRVIDHSQYLCRSWQKLYFPARVCRYIRIVGTHN 370 380 390 400 410 420 >>KIAA1445 ( 1202 res) fg03469b (1202 aa) initn: 77 init1: 65 opt: 91 Z-score: 89.7 bits: 27.9 E(): 8.5 Smith-Waterman score: 91; 27.027% identity (54.054% similar) in 74 aa overlap (380-450:979-1050) 350 360 370 380 390 400 FLJ002 GCTDLNSPNFNFQANTDDGSCEGKMTNFSFGGVYQE---CTQLSGNRDVLLCQKLEQKNP :: ::. ::. . . .: :. .. KIAA14 EYQDCNPQACPVRGAWSCWTSWSPCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEA 950 960 970 980 990 1000 410 420 430 440 450 460 FLJ002 LTGDFSCPSGYSPVHLLSQIHEEGYNHLECHRKCTLLVFCKTVCEDVFQVAKAEFRAFWC : . .:: :.:: :. ..: . :.: :. ...: KIAA14 LCATQACPEGWSPWSEWSKCTDDGAQSR--SRHCEELLPGSSACAGNSSQSRPCPYSEIP 1010 1020 1030 1040 1050 1060 470 480 490 500 510 520 FLJ002 VASSQVPENSGLLFGGLFSSKSINPMTNAQSCPAGYFPLRLFENLKVCVSQDYELGSRFA KIAA14 VILPASSMEEATGCAGFNLIHLVATGISCFLGSGLLTLAVYLSCQHCQRQSQESTLVHPA 1070 1080 1090 1100 1110 1120 717 residues in 1 query sequences 2210277 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:56 2009 done: Fri Feb 27 10:45:56 2009 Total Scan time: 0.680 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]