# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj07454.fasta.huge -Q ../query/FLJ00240.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00240, 383 aa vs ./tmplib.10216 library 2210611 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.6844+/-0.00417; mu= 17.1755+/- 0.282 mean_var=100.8205+/-21.825, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.127732 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00330 ( 246 res) sj03258 ( 246) 226 51.1 9.7e-08 FLJ00180 ( 499 res) sj01466 ( 499) 196 46.0 6.8e-06 FLJ00348 ( 778 res) sg00015 ( 778) 121 32.4 0.13 FLJ00206 ( 702 res) sj04644 ( 702) 119 32.0 0.16 FLJ00359 ( 1056 res) sh03991 (1056) 119 32.2 0.2 KIAA1187 ( 813 res) fk03027 ( 813) 107 29.8 0.79 FLJ00366 ( 282 res) sh05203 ( 282) 94 26.8 2.2 KIAA0203 ( 1593 res) ha02320 (1593) 99 28.8 3.3 KIAA1555 ( 2414 res) fh17482s2 (2414) 98 28.8 4.8 KIAA0926 ( 1447 res) hh02962 (1447) 95 28.0 5.2 KIAA1763 ( 1322 res) fj06918y2 (1322) 92 27.4 7.2 KIAA0627 ( 1324 res) hh01026s2 (1324) 92 27.4 7.2 KIAA0755 ( 1093 res) hk04532 (1093) 89 26.7 9.4 KIAA1313 ( 398 res) fh12154 ( 398) 83 25.0 11 KIAA1851 ( 523 res) hg04492 ( 523) 84 25.4 11 KIAA0464 ( 586 res) hg01093(revised) ( 586) 84 25.4 12 KIAA1022 ( 1131 res) fg00613 (1131) 87 26.4 12 KIAA0002 ( 555 res) ha00029 ( 555) 83 25.2 13 FLJ00236 ( 702 res) sj07289 ( 702) 84 25.5 14 KIAA1064 ( 1315 res) hj05008s1 (1315) 86 26.3 15 KIAA1526 ( 963 res) fj04743(revised) ( 963) 84 25.7 17 KIAA1788 ( 413 res) fh22801 ( 413) 80 24.5 17 KIAA1633 ( 1852 res) fh23696 (1852) 87 26.6 17 KIAA0220 ( 553 res) ha04626 ( 553) 81 24.8 17 KIAA1631 ( 1032 res) fh15959s1 (1032) 83 25.6 20 KIAA1191 ( 100 res) hh01795a ( 100) 72 22.2 20 KIAA1271 ( 542 res) hk06527 ( 542) 79 24.5 22 KIAA0915 ( 846 res) hk06275s1 ( 846) 81 25.1 22 KIAA1865 ( 723 res) fj14303 ( 723) 80 24.8 23 KIAA1703 ( 1165 res) fj16891 (1165) 82 25.5 24 KIAA0737 ( 629 res) hk03869 ( 629) 79 24.5 24 KIAA1234 ( 727 res) fh08618 ( 727) 79 24.6 26 KIAA1762 ( 1460 res) fh27937(revised) (1460) 82 25.6 27 KIAA1075 ( 1505 res) hj06716s1 (1505) 82 25.6 28 KIAA0728 ( 1637 res) fh22477 (1637) 82 25.6 29 KIAA1888 ( 737 res) fk02242 ( 737) 78 24.4 30 KIAA0013 ( 1086 res) ha00450s1 (1086) 79 24.9 33 KIAA0205 ( 391 res) ha02324 ( 391) 74 23.3 34 KIAA1760 ( 2219 res) af00030 (2219) 82 25.8 35 FLJ00248 ( 501 res) sj08681 ( 501) 75 23.7 35 FLJ00386 ( 811 res) sj04204 ( 811) 77 24.3 36 KIAA1437 ( 811 res) hk07206 ( 811) 77 24.3 36 KIAA0310 ( 2388 res) ee03470 (2388) 82 25.9 36 KIAA1737 ( 400 res) pj00125 ( 400) 73 23.2 39 KIAA1076 ( 804 res) hj06779 ( 804) 76 24.1 41 KIAA0522 ( 1555 res) hg01393 (1555) 79 25.1 41 KIAA0907 ( 569 res) hk10396 ( 569) 74 23.6 43 KIAA1670 ( 598 res) hh04251 ( 598) 74 23.6 44 FLJ00189 ( 491 res) sj02334 ( 491) 73 23.3 45 FLJ00367 ( 75 res) sh06256 ( 75) 64 20.5 46 >>FLJ00330 ( 246 res) sj03258 (246 aa) initn: 259 init1: 226 opt: 226 Z-score: 232.3 bits: 51.1 E(): 9.7e-08 Smith-Waterman score: 231; 43.396% identity (62.264% similar) in 106 aa overlap (30-122:104-207) 10 20 30 40 50 FLJ002 LRHRLASRCPAPRLLLPPHLPQPGSQQLLPQGSLHRKGREAPPAFKQFFSSAYTLSHV- :.: : ::: .. : ...: .. FLJ003 QPRADAAAPGPGGLQAAARRAQVSVGPRPRPRGRSHPALAFAPP--RSCFCRSHNLPQIL 80 90 100 110 120 130 60 70 80 90 100 FLJ002 NLSATKLPLEAL------------RALLQGLSLNSHLSDLHLDLSSCELRSAGAQALQEQ : . : : ::::.::.::.:: :::::::.:::::::::..:. FLJ003 ALPPSFAPWSPLSQLPPPRVTSSPRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDL 140 150 160 170 180 190 110 120 130 140 150 160 FLJ002 LGAVTCVGSLDLSDNGFDSDLLTLVPALGKNKSLKHLFLGKNFNVKAKTLEEILHKLVQL . . :.::::.::: FLJ003 VCDAGAVSSLDLADNGEAAGEPILASSTRFPIPTLPLQLRLVRDPSHPQASAQTW 200 210 220 230 240 >>FLJ00180 ( 499 res) sj01466 (499 aa) initn: 285 init1: 148 opt: 196 Z-score: 199.1 bits: 46.0 E(): 6.8e-06 Smith-Waterman score: 236; 25.974% identity (57.143% similar) in 308 aa overlap (20-312:58-356) 10 20 30 40 FLJ002 LRHRLASRCPAPRLLLPPHLPQPGSQQLLPQGSLHRKGREAPPAFK--- : : :.:::: :: : :. FLJ001 RLTGPAHRAALAYLLQVSDACAQEANLSLSLSQGVLQSLLPQLLYCRKLRLDTNQFQDPV 30 40 50 60 70 80 50 60 70 80 90 100 FLJ002 -QFFSSAYT-----LSHVNLSATKLPLEALRALLQGLSLNSHLSDLHLDLSSCELRSAGA ....:. . .....:. ... .. .:: ..: .: :.. ::: . . :: FLJ001 MELLGSVLSGKDCRIQKISLAENQISNKGAKALARSLLVNRSLTS--LDLRGNSIGPQGA 90 100 110 120 130 140 110 120 130 140 150 FLJ002 QALQEQLGAVTCVGSLDLSDNGF-DSDLLTLVPALGKNKSLKHLFLGKNFNVKAKTLEEI .:: . : . ::.:. : :. ... ::..:..:. : : :: .. ... FLJ001 KALADALKINRTLTSLSLQGNTVRDDGARSMAEALASNRTLSMLHLQKN-SIGPMGAQRM 150 160 170 180 190 200 160 170 180 190 200 210 FLJ002 LHKLVQLIQEEDCSLQSLSVADSRLKLRTSILINALGSNTCLAKVDLSGNGMEDIGAKML : : . .. ..: :..:. : : .:: : : ..::..:.. : :. : FLJ001 ADALKQNRSLKELMFSSNSIGDGGAK----ALAEALKVNQGLESLDLQSNSISDAGVAAL 210 220 230 240 250 260 220 230 240 250 260 270 FLJ002 SKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRFMSFPVSDI-SQAYRSAP--- :: :..: .. .:. : : ::.:: .: ::. ... .. . .:. :. FLJ001 MGALCTNQTLLSLSLRENSISPEGAQAIAHALCANSTLKNLDLTANLLHDQGARAIAVAV 270 280 290 300 310 320 280 290 300 310 320 330 FLJ002 -ERTEDVWQKIQWCLVRNNHSQTCPQEQAFRLQQGLVTSSAEQMLQRLCGRVQEEVRALR : . ..:: ... . .:. : :..:...:.. FLJ001 RENRTLTSLHLQWNFIQAGAAQALGQ--ALQLNRSLTSLDLQENAIGDDGACAVARALKV 330 340 350 360 370 340 350 360 370 380 FLJ002 LCPLEPVQDELLYARDLIKDAKNSRAVSPPQATLPLKSGEPKKADHAKP FLJ001 NTALTALYLQVASIGASGAQVLGEALAVNRTLEILDLRGNAIGVAGAKALANALKVNSSL 380 390 400 410 420 430 >>FLJ00348 ( 778 res) sg00015 (778 aa) initn: 96 init1: 96 opt: 121 Z-score: 122.3 bits: 32.4 E(): 0.13 Smith-Waterman score: 140; 26.667% identity (66.667% similar) in 120 aa overlap (116-232:625-744) 90 100 110 120 130 140 FLJ002 LHLDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGFDSDLLTLVPALGKNKSL-KHLF :..:: . :.: . : .:: .:. FLJ003 ELARSVEEAMESGALARLTGPAHRAALAYLLQVSDACAQEANLSLSLSQGVLQSLLPQLL 600 610 620 630 640 650 150 160 170 180 190 200 FLJ002 LGKNFNVKAKTLEE-ILHKLVQLIQEEDCSLQSLSVADSRLKLR-TSILINALGSNTCLA ... . .. ... ... : .... .:: .:..:.:..... . .. : .: : :. FLJ003 YCRKLRLDTNQFQDPVMELLGSVLSGKDCRIQKISLAENQISNKGAKALARSLLVNRSLT 660 670 680 690 700 710 210 220 230 240 250 260 FLJ002 KVDLSGNGMEDIGAKMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRFMSF ..:: ::.. ::: :. ::.:: .: .. FLJ003 SLDLRGNSIGPQGAKALADALKINRTLTSLRVKFMYHKIDCFRRVPEADACNPSTLGGQG 720 730 740 750 760 770 >>FLJ00206 ( 702 res) sj04644 (702 aa) initn: 136 init1: 105 opt: 119 Z-score: 120.8 bits: 32.0 E(): 0.16 Smith-Waterman score: 132; 27.660% identity (56.596% similar) in 235 aa overlap (68-282:11-237) 40 50 60 70 80 90 FLJ002 GREAPPAFKQFFSSAYTLSHVNLSATKLPLEALRALLQGLSLNSHLSDLHLDLSSCELRS ::: :::: . :: .. :::. .:.. FLJ002 QKCQLQVHDAEALIALLQE---GPHLEEV--DLSGNQLED 10 20 30 100 110 120 130 140 FLJ002 AGAQALQEQLGAVTCVGSLDLSDNGFDSD----LLTLVPA---LGK-NKSLKH---LFLG : . . : . . . .:::::::.. .: : : :.. . ::.: .:. FLJ002 EGCRLMAEAASQLHIARKLDLSDNGLSVAGVHCVLRAVSACWTLAELHISLQHKTVIFMF 40 50 60 70 80 90 150 160 170 180 190 200 FLJ002 KNFNVKAKTLEE---ILHKLV-QLIQEEDCSLQSLSVADSRLKLR-TSILINALGSNTCL . . : .: .: .:. :. .: : . . .. :. . : .:::.. : FLJ002 AQEPEEQKGPQERAAFLDSLMLQMPSELPLSSRRMRLTHCGLQEKHLEQLCKALGGSCHL 100 110 120 130 140 150 210 220 230 240 250 FLJ002 AKV--DLSGNGMEDIGAKMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRF ... :.:::.. : :: :.. : ..:... ..:. : . : ..: . ::.. FLJ002 GHLHLDFSGNALGDEGAARLAQLLPGLGALQSLNLSENGLSLDAVLGLVRCFS---TLQW 160 170 180 190 200 210 260 270 280 290 300 310 FLJ002 M-SFPVSDISQAYRSAPERT-EDVWQKIQWCLVRNNHSQTCPQEQAFRLQQGLVTSSAEQ . . .: :: ..: .:.: FLJ002 LFRLDISFESQHILLRGDKTSRDMWATGSLPDFPAAAKFLGFRKRCIPRSLCLSECPLEP 220 230 240 250 260 270 >>FLJ00359 ( 1056 res) sh03991 (1056 aa) initn: 196 init1: 105 opt: 119 Z-score: 118.9 bits: 32.2 E(): 0.2 Smith-Waterman score: 140; 23.235% identity (51.471% similar) in 340 aa overlap (9-324:399-727) 10 20 30 FLJ002 LRHRLASRCPAPRLLLPPHLPQP--GSQQLLPQGSLHR :: : :: :. : :. .: FLJ003 HNFPLTCTDLATLTNILEHREAPIHLDFDGCP-----LEPHCPEALVGCGQIE---NLSF 370 380 390 400 410 420 40 50 60 70 80 90 FLJ002 KGREAPPAFKQFFSSAYT----LSHVNLSATKLPLEALRALLQGLSLNSHLSDLHLDLSS :.:. :: . .: . :. ..:...:. ... :...: : .:.. ... . FLJ003 KSRKCGDAFAEALSRSLPTMGRLQMLGLAGSKITARGISHLVKALPLCPQLKE--VSFRD 430 440 450 460 470 100 110 120 130 140 FLJ002 CELRSAGAQALQEQLGAVTCVGSLDLSDNGFD-SDLLTLVPALGKNKSLKHLFLGKN--- .: . . . : : . . .::::.:.. : :: :. . ... : . FLJ003 NQLSDQVVLNIVEVLPHLPRLRKLDLSSNSICVSTLLCLARVAVTCPTVRMLQAREADLI 480 490 500 510 520 530 150 160 170 180 190 200 FLJ002 FNVKAKTLEEILHKLVQLIQEED-----CSLQSLSVADSRLKLRTS---ILINALGSNTC : .. : . . .:: : . .::.. .. .:.. :: : . FLJ003 FLLSPPTETTAELQRAPDLQESDGQRKGAQSRSLTLRLQKCQLQVHDAEALIALLQEGPH 540 550 560 570 580 590 210 220 230 240 250 FLJ002 LAKVDLSGNGMEDIGAKMLSKAL-QINSSLRTILWDRNNTSALGFLDIARALESNHTLR- : .:::::: .:: : .....: :.. . . : : :. :. : . ::. . :: FLJ003 LEEVDLSGNQLEDEGCRLMAEAASQLHIARKLDLSD-NGLSVAGVHCVLRAVSACWTLAE 600 610 620 630 640 650 260 270 280 290 300 310 FLJ002 -FMSFPVSDISQAYRSAPERTEDVWQKIQW--CLVRNNHSQTCPQEQAFRLQQ-GLVTSS .:. . . . . ::. . .. . :. . :. . . .:: . :: . FLJ003 LHISLQHKTVIFMFAQEPEEQKGPQERAAFLDSLMLQMPSELPLSSRRMRLTHCGLQEKH 660 670 680 690 700 710 320 330 340 350 360 370 FLJ002 AEQMLQRLCGRVQEEVRALRLCPLEPVQDELLYARDLIKDAKNSRAVSPPQATLPLKSGE ::. . : : FLJ003 LEQLCKALGGSCHLGHLHLDFSGNALGDEGAARLAQLLPGLGALQSLNLSENGLSLDAVL 720 730 740 750 760 770 >>KIAA1187 ( 813 res) fk03027 (813 aa) initn: 86 init1: 54 opt: 107 Z-score: 108.2 bits: 29.8 E(): 0.79 Smith-Waterman score: 107; 41.304% identity (63.043% similar) in 46 aa overlap (3-44:448-493) 10 20 30 FLJ002 LRHRLASRCPAPR--LLLPPHLPQPGSQQLLP :: :: ::.: :::. :.: . : KIAA11 ASPRARLSASTASELSPKSKARPSSPSTSWHRPASPCPSPGPGHTLPPKPPSPRGTTASP 420 430 440 450 460 470 40 50 60 70 80 FLJ002 QGSLHRK--GREAPPAFKQFFSSAYTLSHVNLSATKLPLEALRALLQGLSLNSHLSDLHL .: ..:: ..:.: : KIAA11 KGRVRRKEEAKESPSAAGPEDKSQSKRRASNEKESAAPASPAPSPAPSPTPAPPQKEQPP 480 490 500 510 520 530 >>FLJ00366 ( 282 res) sh05203 (282 aa) initn: 87 init1: 87 opt: 94 Z-score: 100.2 bits: 26.8 E(): 2.2 Smith-Waterman score: 96; 26.357% identity (48.837% similar) in 129 aa overlap (5-116:37-161) 10 20 FLJ002 LRHRLASRCPAPRLLLPPHLPQPGSQQ-----LL : : ::::::.::: : : :. :. FLJ003 RTAAASTSAVVLSSASPGWSLLPTAMSGECLHSTCPAPRLFLPPPLAVPLSRWPPCSCLI 10 20 30 40 50 60 30 40 50 60 70 FLJ002 PQ-----------GSLHRKGREAPPAFKQFFSSAYTLSHVNLSATKLPLEA-LRALLQGL : : :.. : : .: . ...: . ..: . .. : : . FLJ003 PPPCSPGRHFVVLGEYDRSSNAEP---LQVLSVSRAITHPSWNSTTMNNDVTLLKLASPA 70 80 90 100 110 120 80 90 100 110 120 130 FLJ002 SLNSHLSDLHLDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGFDSDLLTLVPALGKN . ....: . : :: : . : . : .. ::.. FLJ003 QYTTRISPVCLA-SSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQY 130 140 150 160 170 180 140 150 160 170 180 190 FLJ002 KSLKHLFLGKNFNVKAKTLEEILHKLVQLIQEEDCSLQSLSVADSRLKLRTSILINALGS FLJ003 WGSSITDSMICAGGAGASSCQVSPSTRSSALSCGIPPQPPLLNSPSLFPLRVTPEALLSA 190 200 210 220 230 240 >>KIAA0203 ( 1593 res) ha02320 (1593 aa) initn: 93 init1: 70 opt: 99 Z-score: 97.1 bits: 28.8 E(): 3.3 Smith-Waterman score: 100; 21.088% identity (55.782% similar) in 147 aa overlap (247-383:506-650) 220 230 240 250 260 270 FLJ002 KMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRFMSFPVSDISQAYRSAPE . : . .: .. . :.: .. :.. KIAA02 RLVIELLERVKIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKRLYEAEKS 480 490 500 510 520 530 280 290 300 310 320 FLJ002 RTEDVWQKIQWCLVRNN--------HSQTCPQE-QAFRLQQGLVTSSAEQMLQRLC-GRV . :. . .. ..:: . : :. . : . .. . :.:: .: ..: KIAA02 KRESFGKLFRKSFLRNRLFRGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEV 540 550 560 570 580 590 330 340 350 360 370 380 FLJ002 QEEVRALRLCPLEPVQDELLYARDLIKDAKNSRAVSPPQATLPLKSGEPKKADHAKP : .:. :: .::.....: ..:.: :.. .: :. : : . ......: KIAA02 QPFLRVPLLCDFEPLHQHVLALHNLVKAAQSLDEMS--QTITDLLSEQKASVSQTSPQSA 600 610 620 630 640 650 KIAA02 SSPRMESTAGITTTTSPRTPPPLTVQDPLCPAVCPLEELSPDSIDAHTFDFETIPHPNIE 660 670 680 690 700 710 >>KIAA1555 ( 2414 res) fh17482s2 (2414 aa) initn: 159 init1: 62 opt: 98 Z-score: 94.2 bits: 28.8 E(): 4.8 Smith-Waterman score: 104; 32.000% identity (49.000% similar) in 100 aa overlap (10-99:1184-1283) 10 20 30 FLJ002 LRHRLASRCPAPRLLLPPHL----PQPGSQQLLPQGSLH : :::: : : : . .: :.:: KIAA15 LFSFQHLVQHEPGQSPEFFSTQAMSSLLSSPYSMPLLPPSLFQAPPLPLQPTVLHPGQLH 1160 1170 1180 1190 1200 1210 40 50 60 70 80 FLJ002 RKGREAPPA---FKQ---FFSSAYTLSHVNLSATKLPLEALRALLQGLSLNSHLSDLHLD :: :.: :. : : . :. :::.. :: ...::: ... . KIAA15 LPQLMPHPANIPFRQPPSFLPMPYPTSSALSSGFFLPLQSQFALQLPGDVESHLPQIKTS 1220 1230 1240 1250 1260 1270 90 100 110 120 130 140 FLJ002 LSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGFDSDLLTLVPALGKNKSLKHLFLGKNF :. ::: KIAA15 LAPLATGSAGLSPSTEYSSDIRLPPVAPPASSSAPTSAPPLALPACPDTMVSLVVPVRVQ 1280 1290 1300 1310 1320 1330 >>KIAA0926 ( 1447 res) hh02962 (1447 aa) initn: 122 init1: 54 opt: 95 Z-score: 93.6 bits: 28.0 E(): 5.2 Smith-Waterman score: 134; 26.452% identity (62.581% similar) in 155 aa overlap (73-224:818-965) 50 60 70 80 90 100 FLJ002 PAFKQFFSSAYTLSHVNLSATKLPLEALRALLQGLSLNSHLSDLHLDLSSCELRSAGAQA :.. :... .:..: :::. : ..... KIAA09 IEGRQHRSTWSPTMVVLFRWVPVTDAYWQILFSVLKVTRNLKEL--DLSGNSLSHSAVKS 790 800 810 820 830 840 110 120 130 140 150 160 FLJ002 LQEQLGAVTCV-GSLDLSDNGFDS-DLLTLVPALGKNKSLKHLFLGKNFNVKAKTLEEIL : . : :. .: :. :. . : :. .: :..: .: : .::: . KIAA09 LCKTLRRPRCLLETLRLAGCGLTAEDCKDLAFGLRANQTLTELDL--SFNV---LTDAGA 850 860 870 880 890 900 170 180 190 200 210 FLJ002 HKLVQLIQEEDCSLQSLSVADSRLKLRTSI-LINALGSNTCLAKVDLSGNGMEDIGAKML ..: : ... .:.:: :.... : : ..:... : ..::. :...:.:...: KIAA09 KHLCQRLRQPSCKLQRLQLVSCGLTSDCCQDLASVLSASPSLKELDLQQNNLDDVGVRLL 910 920 930 940 950 960 220 230 240 250 260 270 FLJ002 SKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRFMSFPVSDISQAYRSAPERTE ..:. KIAA09 CEGLRHPACKLIRLGLDQTTLSDEMRQELRALEQEKPQLLIFSRRKPSVMTPTEGLDTGE 970 980 990 1000 1010 1020 383 residues in 1 query sequences 2210611 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:57 2009 done: Fri Feb 27 10:45:57 2009 Total Scan time: 0.500 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]