# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj07511.fasta.huge -Q ../query/FLJ00402.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00402, 137 aa vs ./tmplib.10216 library 2210857 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.7566+/-0.00623; mu= 4.8638+/- 0.420 mean_var=225.6648+/-47.900, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.085377 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1856 ( 1134 res) fh03203 (1134) 142 29.1 0.66 FLJ00011 ( 394 res) as00011 ( 394) 118 25.5 2.8 KIAA0304 ( 2415 res) af07172 (2415) 130 28.1 2.8 FLJ00361 ( 366 res) sh04352 ( 366) 115 25.1 3.4 KIAA0595 ( 1666 res) hj02929s1 (1666) 122 26.9 4.5 KIAA1538 ( 1029 res) fg06773 (1029) 115 25.7 6.2 FLJ00420 ( 613 res) sj09535 ( 613) 109 24.7 7.7 KIAA1311 ( 889 res) fh11512 ( 889) 111 25.1 8 KIAA0691 ( 762 res) hk03735 ( 762) 109 24.8 8.7 FLJ00049 ( 133 res) as00049 ( 133) 97 22.3 8.9 FLJ00221 ( 298 res) sj06160 ( 298) 102 23.4 9.2 KIAA0522 ( 1555 res) hg01393 (1555) 113 25.7 9.4 KIAA0458 ( 1552 res) ef01252 (1552) 112 25.6 10 KIAA0602 ( 962 res) hg01082b ( 962) 108 24.8 11 FLJ00280 ( 440 res) sh01728 ( 440) 102 23.6 12 KIAA1076 ( 804 res) hj06779 ( 804) 106 24.5 12 FLJ00066 ( 162 res) as00066 ( 162) 95 22.1 12 FLJ00353 ( 1766 res) sh01144 (1766) 111 25.6 12 KIAA0865 ( 1900 res) hk06640y1 (1900) 109 25.4 15 KIAA1306 ( 1154 res) fh05845 (1154) 104 24.4 17 FLJ00287 ( 186 res) sh02562 ( 186) 91 21.7 18 KIAA1849 ( 1114 res) fg05386(revised) (1114) 103 24.3 18 KIAA0653 ( 558 res) hk01718 ( 558) 98 23.3 19 FLJ00096 ( 208 res) as00096 ( 208) 90 21.7 21 KIAA1802 ( 821 res) fj21631 ( 821) 99 23.6 21 KIAA1190 ( 174 res) hg03443a ( 174) 88 21.3 22 KIAA0992 ( 772 res) hk07554 ( 772) 98 23.5 22 KIAA0306 ( 1451 res) hg00063 (1451) 102 24.3 23 KIAA1986 ( 334 res) pg00636 ( 334) 92 22.2 23 KIAA1299 ( 730 res) fg04370 ( 730) 97 23.3 24 KIAA1713 ( 1652 res) fh22344 (1652) 102 24.4 25 KIAA2032 ( 952 res) eh00720 ( 952) 98 23.6 25 KIAA1375 ( 546 res) fj04426 ( 546) 94 22.8 26 FLJ00330 ( 246 res) sj03258 ( 246) 88 21.5 27 KIAA0915 ( 846 res) hk06275s1 ( 846) 96 23.3 28 KIAA2036 ( 1322 res) pf06513 (1322) 99 23.9 28 KIAA0775 ( 639 res) hk05255 ( 639) 94 22.9 28 FLJ00159 ( 567 res) sh06608 ( 567) 92 22.5 31 KIAA1810 ( 579 res) fk03376 ( 579) 92 22.5 32 KIAA1932 ( 795 res) fj14525 ( 795) 94 23.0 32 FLJ00342 ( 233 res) sf00009 ( 233) 85 21.1 34 KIAA0437 ( 1605 res) hj00203s1 (1605) 98 23.9 34 KIAA2011 ( 1091 res) pj02017 (1091) 95 23.3 35 KIAA0029 ( 974 res) ha00566 ( 974) 94 23.1 36 KIAA0144 ( 983 res) ha03843 ( 983) 94 23.1 36 FLJ00153 ( 497 res) sh06127 ( 497) 89 22.1 37 KIAA0755 ( 1093 res) hk04532 (1093) 94 23.2 38 KIAA0654 ( 1267 res) fh18335 (1267) 94 23.3 42 KIAA1878 ( 453 res) pj01649 ( 453) 87 21.8 42 KIAA2021 ( 648 res) ah05004 ( 648) 89 22.2 43 >>KIAA1856 ( 1134 res) fh03203 (1134 aa) initn: 312 init1: 92 opt: 142 Z-score: 109.7 bits: 29.1 E(): 0.66 Smith-Waterman score: 144; 31.618% identity (45.588% similar) in 136 aa overlap (17-135:987-1116) 10 20 30 40 FLJ004 QVSLVRTMPSRCHCHSPILPNP-PSLPPSLPTLIPPPFLLWGKFSH : :: : : :: :: :.::: .. KIAA18 PPPPPPPHPPLPPPPLPPPPLPLRLPPLPPPPLPRPHPPPPPPLPPLLPPPQTRTLPAAR 960 970 980 990 1000 1010 50 60 70 80 90 100 FLJ004 SHSQTPAPRIWAQGPRSRDAGRGPA-PKGRGGRGSACCLPWGRSEVPGTP---VRVPAA- . : : ::. : : :. : :. : :: : . : .: . .: .: : . KIAA18 TMRQPPPPRL-ALPRRRRSPPRPPSRPARRGPRPT----PQARRRPRPSPRRLLRSPHSL 1020 1030 1040 1050 1060 1070 110 120 130 FLJ004 -------AAREWAKREHACISKKP----ARSLDFPVFALHPRSPSTHT . : .::.: : : . : : . :::: . KIAA18 CSPRLRPGPRADPRRERASTSPPPRSWPSGSACRP-WRTGPRSPPSCQPGSSGSGSASPP 1080 1090 1100 1110 1120 1130 KIAA18 SGVA >>FLJ00011 ( 394 res) as00011 (394 aa) initn: 103 init1: 76 opt: 118 Z-score: 98.4 bits: 25.5 E(): 2.8 Smith-Waterman score: 124; 33.051% identity (50.000% similar) in 118 aa overlap (9-122:88-188) 10 20 30 FLJ004 QVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPPFL : : : .: ::.::: : . : .: FLJ000 ALKVSPSASAPRHPHKGIPPLQDVPVDAFTPLRIAC-TP----PPQLPPVAPRPLRPNWL 60 70 80 90 100 110 40 50 60 70 80 90 FLJ004 LWGKFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPG--TPVR : .:. : : ::. :::. .:. ..:..::. :.: :: .: FLJ000 LTEPLSREHPPQSQIRGRAQS-RSRSRSRS---RSRSSRGQ------GKS--PGRRSPSP 120 130 140 150 160 100 110 120 130 FLJ004 VPAAAAREWAKREHACISKKPA--RSLDFPVFALHPRSPSTHT ::. : : : . .: : :: FLJ000 VPTPAPSMTNGRYHKPRKARPPLPRPLDGEAAKVGAKQGPSESGTEGTAKEAAMKNPSGE 170 180 190 200 210 220 >>KIAA0304 ( 2415 res) af07172 (2415 aa) initn: 87 init1: 87 opt: 130 Z-score: 98.3 bits: 28.1 E(): 2.8 Smith-Waterman score: 130; 36.145% identity (54.217% similar) in 83 aa overlap (20-101:132-202) 10 20 30 40 FLJ004 QVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPPFLLWGKFSHSHSQ : :: :: ::. ::: .. . . KIAA03 PPPPLTPPAPSPPPPLPPPSTSPPPPLCPPPPPPVSPPPLPSPPPPPA------QEEQEE 110 120 130 140 150 50 60 70 80 90 100 FLJ004 TPAPRIWAQGPRSRDAGRGP-APKGRGGRGSACCLPWGRSEVPGTPVRVPAAAAREWAKR .: : . : :.: :: : .:. :. : .: : : : : ::. :..: KIAA03 SPPPVVPATCSRKR--GRPPLTPSQRAEREAARAGPEGTS--PPTPT--PSTATGGPPED 160 170 180 190 200 110 120 130 FLJ004 EHACISKKPARSLDFPVFALHPRSPSTHT KIAA03 SPTVAPKSTTFLKNIRQFIMPVVSARSSRVIKTPRRFMDEDPPKPPKVEVSPVLRPPITT 210 220 230 240 250 260 >>FLJ00361 ( 366 res) sh04352 (366 aa) initn: 128 init1: 76 opt: 115 Z-score: 96.8 bits: 25.1 E(): 3.4 Smith-Waterman score: 115; 35.955% identity (46.067% similar) in 89 aa overlap (15-94:74-160) 10 20 30 FLJ004 QVSLVRTMPSRCHCHSPILPN---PPSLPPSLPTL-IPPPFL-- ::: :. :: : .: : :: FLJ003 LRRFQGAESEESAAAWGPAWRNLHGEAAGRHSPDAPGTTAPPRPRASRRALSAPAPFRQE 50 60 70 80 90 100 40 50 60 70 80 90 FLJ004 --LWGKFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGR-SEVPGTPV :: . . ::: . : :. :::: .:: ::.: :: . :: : FLJ003 MHLWHQVQVLPPGEAAPRATGGGRRAPRQDRGPAWRGR--RGAAATESPGRFRRSPGGPP 110 120 130 140 150 160 100 110 120 130 FLJ004 RVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT FLJ003 GTICAQPPAGAGVPGPGRPARELLSVGLQRRPGAPGAASPGPRLQPHAPTGRARLGVRGP 170 180 190 200 210 220 >>KIAA0595 ( 1666 res) hj02929s1 (1666 aa) initn: 127 init1: 74 opt: 122 Z-score: 94.6 bits: 26.9 E(): 4.5 Smith-Waterman score: 122; 31.461% identity (46.067% similar) in 89 aa overlap (17-94:892-974) 10 20 30 40 FLJ004 QVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPPFLLWGKFSHS : :: :: ::::: . : .: :.: KIAA05 PPVQSVSPAVPTPPSMSAALPFPAGGLGMPPSLPPPPLQPPSLPLSMGP--VLPDPFTH- 870 880 890 900 910 50 60 70 80 90 FLJ004 HSQTPAPRIWAQGPRSRDAGRG--PAP------KGRGGRGSA---CCLPWGRSEVPGTPV .: : : :. .: : : .: : .. : .::. .: .: KIAA05 --YAPLPS-WPCYPHVSPSGYPCLPPPPTVPLVSGTPGAYAVPPTCSVPWAPPPAPVSPY 920 930 940 950 960 970 100 110 120 130 FLJ004 RVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT KIAA05 SSTCTYGPLGWGPGPQHAPFWSTVPPPPLPPASIGRAVPQPKMESRGTPAGPPENVLPLS 980 990 1000 1010 1020 1030 >>KIAA1538 ( 1029 res) fg06773 (1029 aa) initn: 64 init1: 64 opt: 115 Z-score: 92.1 bits: 25.7 E(): 6.2 Smith-Waterman score: 120; 28.205% identity (47.009% similar) in 117 aa overlap (16-130:463-558) 10 20 30 40 FLJ004 QVSLVRTMPSRCHCHSPI-LP-NPPSLPPSLPTLIPPPFLLWGKF .:. .: .:: :: : ::: .. : KIAA15 LLPMRAAKRPYKTYSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAPEPGPPPSVI--TF 440 450 460 470 480 490 50 60 70 80 90 100 FLJ004 SHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAAAR .: ::: . ..: : .: : . . :: .: . . .: : : KIAA15 AH-----PAPSVIVHGGSSSGGG-GSGTASTGGSQAASVITYT------APPRPPK---- 500 510 520 530 110 120 130 FLJ004 EWAKREHACISKKPARSLDFPVFALHPRSPSTHT :::. .:: . :. :. : KIAA15 ---KREYPPPPPEPAATPTSPATAVSPATAAGPAMATTTEEAKGRNPRAGRTLTYTAKPV 540 550 560 570 580 590 >>FLJ00420 ( 613 res) sj09535 (613 aa) initn: 118 init1: 74 opt: 109 Z-score: 90.5 bits: 24.7 E(): 7.7 Smith-Waterman score: 109; 27.500% identity (55.000% similar) in 80 aa overlap (15-94:233-304) 10 20 30 40 FLJ004 QVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPPFLLWGKFS :: :. :..::. :. ::: . . FLJ004 TENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSG-PPPAASALSTT 210 220 230 240 250 260 50 60 70 80 90 100 FLJ004 HSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAAARE ... .::: : : . .:::. .: . :.... .: .: FLJ004 PGNNGVPAP---AAPPSALGPKASPAPSHNSGTPA----PYAQAVAPPAPSGPSTTQPRP 270 280 290 300 310 110 120 130 FLJ004 WAKREHACISKKPARSLDFPVFALHPRSPSTHT FLJ004 PSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNA 320 330 340 350 360 370 >>KIAA1311 ( 889 res) fh11512 (889 aa) initn: 158 init1: 65 opt: 111 Z-score: 90.1 bits: 25.1 E(): 8 Smith-Waterman score: 111; 30.667% identity (52.000% similar) in 75 aa overlap (17-90:144-214) 10 20 30 40 FLJ004 QVSLVRTMPSRCHCHSPILPNPPSLPPSLPT-LIPPPFLLWGKFSH :. : ::.::: : .. ::. : . KIAA13 RGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGP-GP 120 130 140 150 160 170 50 60 70 80 90 100 FLJ004 SHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAAAREW . . :.: . :: . : :.:.:.: . :: : . KIAA13 GPGPGPGP---GPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSRDQPGTS 180 190 200 210 220 110 120 130 FLJ004 AKREHACISKKPARSLDFPVFALHPRSPSTHT KIAA13 AVPNLASVGTRLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPR 230 240 250 260 270 280 >>KIAA0691 ( 762 res) hk03735 (762 aa) initn: 74 init1: 74 opt: 109 Z-score: 89.5 bits: 24.8 E(): 8.7 Smith-Waterman score: 109; 27.500% identity (55.000% similar) in 80 aa overlap (15-94:318-389) 10 20 30 40 FLJ004 QVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPPFLLWGKFS :: :. :..::. :. ::: . . KIAA06 TENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSG-PPPAASALSTT 290 300 310 320 330 340 50 60 70 80 90 100 FLJ004 HSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAAARE ... .::: : : . .:::. .: . :.... .: .: KIAA06 PGNNGVPAP---AAPPSALGPKASPAPSHNSGTPA----PYAQAVAPPAPSGPSTTQPRP 350 360 370 380 390 110 120 130 FLJ004 WAKREHACISKKPARSLDFPVFALHPRSPSTHT KIAA06 PSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNA 400 410 420 430 440 450 >>FLJ00049 ( 133 res) as00049 (133 aa) initn: 84 init1: 59 opt: 97 Z-score: 89.3 bits: 22.3 E(): 8.9 Smith-Waterman score: 97; 26.829% identity (47.561% similar) in 82 aa overlap (17-93:37-111) 10 20 30 40 FLJ004 QVSLVRTMPSRCHCHSPILPNP-PSLPPSLPTLIPPPFLLWGKFSH :. :. :.. : : . :: . FLJ000 PGDGSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPP-------QA 10 20 30 40 50 50 60 70 80 90 100 FLJ004 SHSQTPAPRIWAQGPRSRDAGRG----PAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAA ... .: .: :: : . :. ::. :.. :: : . ::: FLJ000 ANKAVPELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPV 60 70 80 90 100 110 110 120 130 FLJ004 AREWAKREHACISKKPARSLDFPVFALHPRSPSTHT FLJ000 GLCLLSRAPWRCHF 120 130 137 residues in 1 query sequences 2210857 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:50 2009 done: Fri Feb 27 11:02:50 2009 Total Scan time: 0.320 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]