# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj07657.fasta.huge -Q ../query/FLJ00403.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00403, 225 aa vs ./tmplib.10216 library 2210769 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.6210+/-0.00597; mu= 13.0500+/- 0.404 mean_var=218.3569+/-47.922, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.086794 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00324 ( 376 res) sj01157 ( 376) 122 26.7 1.9 KIAA1076 ( 804 res) hj06779 ( 804) 123 27.4 2.6 KIAA0457 ( 845 res) hg00693 ( 845) 122 27.3 2.9 KIAA0079 ( 1102 res) ha03543 (1102) 115 26.6 6 FLJ00096 ( 208 res) as00096 ( 208) 105 24.1 6.4 FLJ00280 ( 440 res) sh01728 ( 440) 108 25.0 7.1 KIAA1075 ( 1505 res) hj06716s1 (1505) 114 26.7 7.7 KIAA0601 ( 886 res) hg00838a ( 886) 111 25.9 7.7 KIAA1924 ( 613 res) hh01339 ( 613) 108 25.3 8.3 KIAA0641 ( 1326 res) hj03494s1 (1326) 108 25.8 12 FLJ00385 ( 509 res) sj03289 ( 509) 102 24.4 13 KIAA1987 ( 357 res) fk04103 ( 357) 100 23.9 13 KIAA0907 ( 569 res) hk10396 ( 569) 102 24.5 14 KIAA1511 ( 1253 res) fg04486(revised) (1253) 105 25.4 15 KIAA1236 ( 1840 res) pg00641 (1840) 107 26.0 16 FLJ00390 ( 322 res) sj04630 ( 322) 97 23.4 16 KIAA1029 ( 1015 res) fh00363 (1015) 103 25.0 16 FLJ00361 ( 366 res) sh04352 ( 366) 97 23.5 17 KIAA0665 ( 760 res) hk02064 ( 760) 101 24.6 17 KIAA1886 ( 655 res) fk01837 ( 655) 100 24.3 17 FLJ00070 ( 1382 res) as00070 (1382) 104 25.4 18 KIAA0199 ( 1283 res) ha03150s1 (1283) 103 25.2 18 KIAA1522 ( 1044 res) fh14706(revised) (1044) 101 24.8 20 FLJ00315 ( 925 res) sh06842 ( 925) 100 24.6 20 KIAA1931 ( 514 res) fj14393 ( 514) 96 23.6 22 KIAA1025 ( 1917 res) fg00971s1 (1917) 102 25.4 24 KIAA1928 ( 757 res) fg05950(revised) ( 757) 96 23.9 26 KIAA1019 ( 2309 res) fg00188s1 (2309) 102 25.5 27 KIAA0618 ( 1052 res) hg03971 (1052) 97 24.3 28 KIAA1856 ( 1134 res) fh03203 (1134) 97 24.4 29 KIAA0672 ( 824 res) hk02382 ( 824) 95 23.9 30 FLJ00016 ( 349 res) as00016 ( 349) 90 22.6 30 KIAA0522 ( 1555 res) hg01393 (1555) 98 24.7 31 KIAA0557 ( 493 res) hh01334 ( 493) 91 23.0 33 KIAA0412 ( 720 res) hg03242 ( 720) 93 23.5 33 FLJ00126 ( 878 res) sh01242 ( 878) 94 23.8 33 KIAA0765 ( 952 res) hk04803s1 ( 952) 94 23.9 35 KIAA1862 ( 1070 res) aj00563 (1070) 94 23.9 37 KIAA1602 ( 1003 res) fj10252 (1003) 93 23.8 39 KIAA0550 ( 1524 res) hh15909 (1524) 95 24.3 40 KIAA1810 ( 579 res) fk03376 ( 579) 89 22.9 42 KIAA0505 ( 200 res) hh00043 ( 200) 83 21.3 42 KIAA0512 ( 710 res) hf00239 ( 710) 90 23.1 42 FLJ00321 ( 245 res) sh07670 ( 245) 84 21.6 42 FLJ00353 ( 1766 res) sh01144 (1766) 95 24.4 43 KIAA1952 ( 735 res) fj14047 ( 735) 90 23.2 43 KIAA0347 ( 1281 res) hg01528(revised) (1281) 93 23.9 43 KIAA1951 ( 679 res) fj05532 ( 679) 89 23.0 45 KIAA1802 ( 821 res) fj21631 ( 821) 90 23.2 45 KIAA0669 ( 825 res) hk02346 ( 825) 90 23.2 45 >>FLJ00324 ( 376 res) sj01157 (376 aa) initn: 51 init1: 51 opt: 122 Z-score: 101.2 bits: 26.7 E(): 1.9 Smith-Waterman score: 122; 30.542% identity (52.709% similar) in 203 aa overlap (9-190:71-247) 10 20 30 FLJ004 RWKGRFPVCAFFFHAVSFFHPGASSKAV-SLMGTSTLD ::: :.: : .. :. .: :. :. FLJ003 GEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAF----VKFGSQGEAQAAIRGLHGSRTM- 50 60 70 80 90 40 50 60 70 80 90 FLJ004 FVACDSQERAGLSDSATLSGVDLMKTEALVTVKANSSHAGNVNGR-----GCGTESGWAA :: :.: ... .: . .:: .. ..: : . .::. . : FLJ003 ---------AGASSSLVVKLADTDRERALRRMQQMAGHLGAFHPAPLPLGACGAYTT-AI 100 110 120 130 140 100 110 120 130 140 FLJ004 LK--GALWAPA-GPLPGPLAPPLSQLQR----PRLGVP--PGATVSSRPPTGLLFPDDVA :. .:: : : :: ::.: .:.:. ...: :.:...: : .: : . FLJ003 LQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAANSPPGSG---P---G 150 160 170 180 190 150 160 170 180 190 FLJ004 TLSPGSWLPCPRCEHPTS--TERWGGQCGAGT---RGLDLYP-QAPICSFADPDPFVCVI :: :: :: : . . : . .:: :. : ::. :: :.: . ::: FLJ003 TL-PG--LPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSP--GVADPLQQAYAG 200 210 220 230 240 250 200 210 220 FLJ004 WGHFGGIFGRCGPGWVCARDAGCWCHKR FLJ003 MHHYAAAYPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPF 260 270 280 290 300 310 >>KIAA1076 ( 804 res) hj06779 (804 aa) initn: 71 init1: 71 opt: 123 Z-score: 99.0 bits: 27.4 E(): 2.6 Smith-Waterman score: 123; 33.962% identity (45.283% similar) in 106 aa overlap (100-192:151-251) 70 80 90 100 110 120 FLJ004 KANSSHAGNVNGRGCGTESGWAALKGALWAPAGPLPGPLAPPLSQLQRPRLGVPP----- : :: :: ::: . :: :: KIAA10 SPEPPAKEVEARPPLSPERAPEHDLEVEPEPPMMLPLPLQPPLPPPRPPRPPSPPPEPET 130 140 150 160 170 180 130 140 150 160 170 FLJ004 -GATVSSRPPTGLLFPDDVATLSPGSWLPCPRCEHPTSTERW----GGQ--CGAGTRGLD :. : :: : .: .:: : . ::: ::. ..:. ::. KIAA10 TDASHPSVPPEPL--AEDHPPHTPGL---CGSLAKSQSTETVPATPGGEPPLSGGSSGLS 190 200 210 220 230 180 190 200 210 220 FLJ004 LY-PQAPICSFADPDPFVCVIWGHFGGIFGRCGPGWVCARDAGCWCHKR : ::.: :. : : KIAA10 LSSPQVPGSPFSYPAPSPSLSSGGLPRTPGRDFSFTPTFSEPSGPLLLPVCPLPTGRRDE 240 250 260 270 280 290 >>KIAA0457 ( 845 res) hg00693 (845 aa) initn: 118 init1: 60 opt: 122 Z-score: 98.1 bits: 27.3 E(): 2.9 Smith-Waterman score: 122; 33.871% identity (50.806% similar) in 124 aa overlap (110-221:42-156) 80 90 100 110 120 130 FLJ004 NGRGCGTESGWAALKGALWAPAGPLPGPLAPPLSQLQRPRLGVPPGATVSSRPP-TGLLF :: . ..: ::. :: :: : :.: KIAA04 GRMPGGGPQGAPAAAGGGGVSHRAGSRDCLPPAACFRRRRLARRPGYMRSSTGPGIGFLS 20 30 40 50 60 70 140 150 160 170 180 190 FLJ004 PDDVATLS--PGSWLPCPRCEHPTSTERWGGQCGAGTRGLDLYPQAPICSFADPDPFVCV : :.:: ::. . . .: : : ::: .::: . ..:. . : : : KIAA04 PA-VGTLFRFPGG-VSGEESHHSESRAR---QCGLDSRGLLV--RSPVSKSA-AAPTVTS 80 90 100 110 120 200 210 220 FLJ004 IWG---HFGGIFGRCG---P---GWVCARDAGCWCHKR . : ::: : : : : .: :. .. : KIAA04 VRGTSAHFG-IQLRGGTRLPDRLSWPCGPGSAGWQQEFAAMDSSETLDASWEAACSDGAR 130 140 150 160 170 180 KIAA04 RVRAAGSLPSAELSSNSCSPGCGPEVPPTPPGSHSAFTSSFSFIRLSLGSAGERGEAEGC 190 200 210 220 230 240 >>KIAA0079 ( 1102 res) ha03543 (1102 aa) initn: 139 init1: 47 opt: 115 Z-score: 92.3 bits: 26.6 E(): 6 Smith-Waterman score: 115; 28.099% identity (49.587% similar) in 121 aa overlap (80-190:164-284) 50 60 70 80 90 100 FLJ004 SDSATLSGVDLMKTEALVTVKANSSHAGNVNGRGCGTESGWAALKGALWAPA--GPLPGP .: : : .. :. .:.. . : : KIAA00 PYGPPPTSAQVATQLSGMQISGAVAPAPPSSGLGFGPPTSLASASGSFPNSGLYGSYPQG 140 150 160 170 180 190 110 120 130 140 150 160 FLJ004 LAPPLSQLQ-RPRLGVP----PGATVSSRPPT--GLLFPDDVATLSPGSWLPCPRCEHPT :::::: : .: . .: :. . : ::. : .:. .. : ::. . : .:. KIAA00 QAPPLSQAQGHPGIQTPQRSAPSQASSFTPPASGGPRLPSMTGPLLPGQSFGGPSVSQPN 200 210 220 230 240 250 170 180 190 200 210 FLJ004 STERWGGQCGAGTRGLD-LYPQAPICSFADPDPFVCVIWGHFGGIFGRCGPGWVCARDAG . ::. : : :. : .: KIAA00 HVSSPPQALPPGTQMTGPLGPLPPMHSPQQPGYQPQQNGSFGPARGPQSNYGGPYPAAPT 260 270 280 290 300 310 220 FLJ004 CWCHKR KIAA00 FGSQPGPPQPLPPKRLDPDAIPSPIQVIEDDRNNRGTEPFVTGVRGQVPPLVTTNFLVKD 320 330 340 350 360 370 >>FLJ00096 ( 208 res) as00096 (208 aa) initn: 102 init1: 51 opt: 105 Z-score: 91.9 bits: 24.1 E(): 6.4 Smith-Waterman score: 105; 35.106% identity (47.872% similar) in 94 aa overlap (85-176:76-160) 60 70 80 90 100 110 FLJ004 LSGVDLMKTEALVTVKANSSHAGNVNGRGCGTESGWAALKGALWAPAG--PLPGPLAPPL :.:.: : :: : ::: : ::: : FLJ000 GCRYSGCKMWPVRAVSIFSTLIGRRLAWRRGSEGGTACTKG-LVLPAGDEPGPGPELFPE 50 60 70 80 90 100 120 130 140 150 160 170 FLJ004 SQLQRPRLGVPPGATVSSRPPTGLLFPDDVATLSPGSWLPCPRCEHPTSTERWGGQCGAG : : . ..:: :: ::. . . : :. : :: . :. :: . FLJ000 SALVQAG-SAPPPPPPPPPPPLCLLL---LRAESEGAVL----MTHPRAWEQRGGGLREA 110 120 130 140 150 180 190 200 210 220 FLJ004 TRGLDLYPQAPICSFADPDPFVCVIWGHFGGIFGRCGPGWVCARDAGCWCHKR :: FLJ000 RGGLGAARSPREQEQREEEELARRPRAPSAPSRRLEPDASNPGWPAAEPWPG 160 170 180 190 200 >>FLJ00280 ( 440 res) sh01728 (440 aa) initn: 54 init1: 54 opt: 108 Z-score: 91.1 bits: 25.0 E(): 7.1 Smith-Waterman score: 112; 32.168% identity (47.552% similar) in 143 aa overlap (100-220:221-355) 70 80 90 100 110 120 FLJ004 KANSSHAGNVNGRGCGTESGWAALKGALWAPA-GPLPGPLAPPLSQLQRPRLGVPPGATV :: : :: : . : : .:: .:: FLJ002 PSRDTPPSRDIPLSLDAPLSLDTPYSRDTLPATGTLPPPRTLPSPGTLPPSGTLPPPGTV 200 210 220 230 240 250 130 140 150 160 170 FLJ004 ---SSRPPTGLLFPDDVATLSPGSW-----LPCPRC-EHPTSTERWG------GQCGAGT .. : : : : . .::. :: :: : . : : : :. . FLJ002 PTPGTLPSPGTL-PAPRTLPTPGTLPSPRTLPTPRTLPTPGTLPRPGTSYVLYGTVGGRA 260 270 280 290 300 180 190 200 210 220 FLJ004 RGLDLYPQAPI--CSFADPD-PFVCVI---WGHFGGIFGRCGPGWVCARDAGCWCHKR ::. .: . : :.. . : :. : .::: :. : ::.:.: :: FLJ002 WGLS-FPPSLIRRCTMRGLSVAFREVMGCRW-RFGGS-GE-G-GWLCSR--GCPGEPRAL 310 320 330 340 350 360 FLJ002 CPSPPTPRPQLSFHAVMVVHRATAQKCLLHAHHTPRDAMRRPGRWLGAQLWGFGVRLAVE 370 380 390 400 410 420 >>KIAA1075 ( 1505 res) hj06716s1 (1505 aa) initn: 136 init1: 71 opt: 114 Z-score: 90.5 bits: 26.7 E(): 7.7 Smith-Waterman score: 120; 28.571% identity (42.857% similar) in 133 aa overlap (92-208:562-688) 70 80 90 100 110 120 FLJ004 KTEALVTVKANSSHAGNVNGRGCGTESGWAALKGALWAPAGPLPGPLAPPLSQLQRPRLG .. :.: ::: : : .:.::: KIAA10 NDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGSLTHTRGPLDGS---PYAQVQRPPRQ 540 550 560 570 580 130 140 150 160 170 FLJ004 VPPGATVSSRPPTGLLFPDDV----------ATLSPGSWLPCPRCEHPTSTERWGGQCG- .::. . :: : .: :. ::: : : . .: : :: KIAA10 TPPAPSPEPPPPPMLSVSSDSGHSSTLTTEPAAESPGR--PPPTAAERQELDRLLGGCGV 590 600 610 620 630 640 180 190 200 210 220 FLJ004 -AGTRGLDLYPQAPICSFADPD----PFVCVIWGHFGGIFGRCGPGWVCARDAGCWCHKR .: :: : . . .: : . : :: :. .: KIAA10 ASGGRGAG-RETAILDDEEQPTVGGGPHLGVYPGHRPGLSRHCSCRQGYREPCGVPNGGY 650 660 670 680 690 700 KIAA10 YRPEGTLERRRLAYGGYEGSPQGYAEASMEKRRLCRSLSEGLYPYPPEMGKPATGDFGYR 710 720 730 740 750 760 >>KIAA0601 ( 886 res) hg00838a (886 aa) initn: 101 init1: 77 opt: 111 Z-score: 90.5 bits: 25.9 E(): 7.7 Smith-Waterman score: 111; 31.000% identity (56.000% similar) in 100 aa overlap (55-152:36-130) 30 40 50 60 70 80 FLJ004 SKAVSLMGTSTLDFVACDSQERAGLSDSATLSGVDLMKTEALVTVKANSSHAGNVNGRGC ::: . : ... :....:: : . KIAA06 VKRGEARLFGPTERQSERPLRPSAARRPEMLSGKKAAAAAAAAAAAATGTEAGP--GTAG 10 20 30 40 50 60 90 100 110 120 130 140 FLJ004 GTESG--WAALKGALWAPAGPLPGPLAPPLSQLQRPRLGVPPGATVSSRPPTGLLFPDDV :.:.: :: ..: .:: :: .. . ..: . :::. ..:: : :. KIAA06 GSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGL--AEPP-GSAGPQAG 70 80 90 100 110 120 150 160 170 180 190 200 FLJ004 ATLSPGSWLPCPRCEHPTSTERWGGQCGAGTRGLDLYPQAPICSFADPDPFVCVIWGHFG :. ::: : KIAA06 PTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAE 130 140 150 160 170 180 >>KIAA1924 ( 613 res) hh01339 (613 aa) initn: 50 init1: 50 opt: 108 Z-score: 89.8 bits: 25.3 E(): 8.3 Smith-Waterman score: 108; 33.333% identity (50.980% similar) in 102 aa overlap (83-182:6-100) 60 70 80 90 100 110 FLJ004 ATLSGVDLMKTEALVTVKANSSHAGNVNGRGCGTESGWAALKGALWAPAGPLPGPLAPPL : . : : : :. :.. .:: . KIAA19 AGSSSGGAMARGSARLAGVPRIPGSGVPGSRVGGR 10 20 30 120 130 140 150 160 170 FLJ004 SQLQRPRLGVPPGATVSSRPPTGLLFPDDVATLSPGSWLPCPRCEHPTSTERWG--GQCG : : :::: : : : .. .: .: . .::.::: .:.: : :. : KIAA19 SA-QGPRLG--PEARVPAQ--AGSRLPG-AHPRAPGAWLPSGARPRPASLAGVGVAGE-G 40 50 60 70 80 180 190 200 210 220 FLJ004 AGTRGLDLYPQAPICSFADPDPFVCVIWGHFGGIFGRCGPGWVCARDAGCWCHKR : . : : :.: KIAA19 AESPGSCLVPEARPSPAVAPARVAESPDARRPLPAAWQHPFLNVFRHFRVDEWKRSAKQG 90 100 110 120 130 140 >>KIAA0641 ( 1326 res) hj03494s1 (1326 aa) initn: 90 init1: 60 opt: 108 Z-score: 86.9 bits: 25.8 E(): 12 Smith-Waterman score: 108; 26.374% identity (48.352% similar) in 182 aa overlap (48-220:389-557) 20 30 40 50 60 70 FLJ004 FFHPGASSKAVSLMGTSTLDFVACDSQERAGLSDSATLSGVDLMKTEALVTVKANSSHAG :. . :. :. :.. : .:... . KIAA06 EEEFERRWRSLRPGGGGVGPGPGAAGPMLGGVVELAAASSFPLLEQFAGDGFHADGDDVL 360 370 380 390 400 410 80 90 100 110 120 130 FLJ004 NVN--GRGCGTESGWAALKGALWAPAGPLPGPLAPPLSQLQRPRLGVPPGAT--VSSRPP .:. .:: . : : : .:: :: :: : :..: : :.:::.. .:.. : KIAA06 TVTETSRGLNFEYKWEAGRGAEAFPATLSPGRTAR-LQELCAPD-GAPPGVVPVLSAHSP 420 430 440 450 460 470 140 150 160 170 180 FLJ004 T-GLLFPDDVATLSP--GSWLPCPRCEH--PTSTERWGGQCGAGTRGLDLYPQAPICSFA . : . . .: : : : :..... . :. . .: . : . KIAA06 SLGSEYFIRLEEAAPAAGHDPDCAGCAPSPPATADQDDDSDGSTAASLAMEP------LL 480 490 500 510 520 530 190 200 210 220 FLJ004 DPDPFVCVIWGHFGGIFGRCGPGWVCARDAGCWCHKR : : : ::. : : ::: : KIAA06 GHGPPVDVPWGR-----GDHYPRRSLARDPLCPSRSPSPSAGPLSLAEGGAEDADWGVAA 540 550 560 570 580 KIAA06 FCPAFFEDPLGTSPLGSSGAPPLPLTGEDELEEVGARRAAQRGHWRSNVSANNNSGSRCP 590 600 610 620 630 640 225 residues in 1 query sequences 2210769 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:50 2009 done: Fri Feb 27 11:02:51 2009 Total Scan time: 0.390 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]