# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj07657.fasta.nr -Q ../query/FLJ00403.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 FLJ00403, 225 aa
 vs /cdna2/lib/nr/nr library

2693465022 residues in 7827732 sequences
 statistics sampled from 60000 to 7825270 sequences
  Expectation_n fit: rho(ln(x))= 5.5570+/-0.00019; mu= 7.9681+/- 0.011
 mean_var=94.1586+/-17.970, 0's: 34 Z-trim: 37  B-trim: 5 in 1/64
 Lambda= 0.132173

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(7827732)
gi|21748650|dbj|BAC03462.1| FLJ00403 protein [Homo ( 225) 1659 325.5   4e-87


>>gi|21748650|dbj|BAC03462.1| FLJ00403 protein [Homo sap  (225 aa)
 initn: 1659 init1: 1659 opt: 1659  Z-score: 1720.5  bits: 325.5 E(): 4e-87
Smith-Waterman score: 1659;  100.000% identity (100.000% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
FLJ004 RWKGRFPVCAFFFHAVSFFHPGASSKAVSLMGTSTLDFVACDSQERAGLSDSATLSGVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|217 RWKGRFPVCAFFFHAVSFFHPGASSKAVSLMGTSTLDFVACDSQERAGLSDSATLSGVDL
               10        20        30        40        50        60

               70        80        90       100       110       120
FLJ004 MKTEALVTVKANSSHAGNVNGRGCGTESGWAALKGALWAPAGPLPGPLAPPLSQLQRPRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|217 MKTEALVTVKANSSHAGNVNGRGCGTESGWAALKGALWAPAGPLPGPLAPPLSQLQRPRL
               70        80        90       100       110       120

              130       140       150       160       170       180
FLJ004 GVPPGATVSSRPPTGLLFPDDVATLSPGSWLPCPRCEHPTSTERWGGQCGAGTRGLDLYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|217 GVPPGATVSSRPPTGLLFPDDVATLSPGSWLPCPRCEHPTSTERWGGQCGAGTRGLDLYP
              130       140       150       160       170       180

              190       200       210       220     
FLJ004 QAPICSFADPDPFVCVIWGHFGGIFGRCGPGWVCARDAGCWCHKR
       :::::::::::::::::::::::::::::::::::::::::::::
gi|217 QAPICSFADPDPFVCVIWGHFGGIFGRCGPGWVCARDAGCWCHKR
              190       200       210       220     




225 residues in 1 query   sequences
2693465022 residues in 7827732 library sequences
 Tcomplib [34.26] (2 proc)
 start: Sat Feb 28 01:50:42 2009 done: Sat Feb 28 01:55:38 2009
 Total Scan time: 699.210 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]