# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj07825.fasta.nr -Q ../query/FLJ00245.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00245, 167 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827102 sequences Expectation_n fit: rho(ln(x))= 5.3669+/-0.000188; mu= 7.1114+/- 0.011 mean_var=81.6551+/-15.656, 0's: 38 Z-trim: 38 B-trim: 62 in 1/63 Lambda= 0.141933 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676692|dbj|BAB84998.1| FLJ00245 protein [Homo ( 167) 1152 244.4 5.8e-63 gi|57209718|emb|CAI40840.1| novel protein [Homo sa ( 167) 1148 243.6 1e-62 gi|169191530|ref|XP_001715821.1| PREDICTED: simila ( 256) 1148 243.7 1.4e-62 gi|187470854|sp|Q8TEF2.2|CJ105_HUMAN RecName: Full ( 133) 927 198.3 3.6e-49 gi|119574818|gb|EAW54433.1| hCG2024862 [Homo sapie ( 133) 923 197.4 6.4e-49 gi|149038758|gb|EDL93047.1| rCG22048 [Rattus norve ( 128) 605 132.3 2.5e-29 gi|148700224|gb|EDL32171.1| mCG55969 [Mus musculus ( 128) 591 129.4 1.8e-28 >>gi|18676692|dbj|BAB84998.1| FLJ00245 protein [Homo sap (167 aa) initn: 1152 init1: 1152 opt: 1152 Z-score: 1286.6 bits: 244.4 E(): 5.8e-63 Smith-Waterman score: 1152; 100.000% identity (100.000% similar) in 167 aa overlap (1-167:1-167) 10 20 30 40 50 60 FLJ002 LGLLVERQESEGLPRVRPPVHGRPQATAAGITGAMSTEGPSLASSPAISPLAFLSAPVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LGLLVERQESEGLPRVRPPVHGRPQATAAGITGAMSTEGPSLASSPAISPLAFLSAPVTP 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 GTLAEATDPLPMLIALACIFLLLATCLVFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 GTLAEATDPLPMLIALACIFLLLATCLVFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQ 70 80 90 100 110 120 130 140 150 160 FLJ002 LRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM ::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM 130 140 150 160 >>gi|57209718|emb|CAI40840.1| novel protein [Homo sapien (167 aa) initn: 1148 init1: 1148 opt: 1148 Z-score: 1282.2 bits: 243.6 E(): 1e-62 Smith-Waterman score: 1148; 99.401% identity (100.000% similar) in 167 aa overlap (1-167:1-167) 10 20 30 40 50 60 FLJ002 LGLLVERQESEGLPRVRPPVHGRPQATAAGITGAMSTEGPSLASSPAISPLAFLSAPVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 LGLLVERQESEGLPRVRPPVHGRPQATAAGITGAMSTEGPSLASSPAISPLAFLSAPVTP 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 GTLAEATDPLPMLIALACIFLLLATCLVFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQ :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|572 GTLAEATDPLPMLIALACIFLLLATCLLFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQ 70 80 90 100 110 120 130 140 150 160 FLJ002 LRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM ::::::::::::::::::::::::::::::::::::::::::::::: gi|572 LRLWKRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM 130 140 150 160 >>gi|169191530|ref|XP_001715821.1| PREDICTED: similar to (256 aa) initn: 1148 init1: 1148 opt: 1148 Z-score: 1279.6 bits: 243.7 E(): 1.4e-62 Smith-Waterman score: 1148; 99.401% identity (100.000% similar) in 167 aa overlap (1-167:90-256) 10 20 30 FLJ002 LGLLVERQESEGLPRVRPPVHGRPQATAAG :::::::::::::::::::::::::::::: gi|169 LLPASGSQALTVATRWPTGQSSEHIVLCLWLGLLVERQESEGLPRVRPPVHGRPQATAAG 60 70 80 90 100 110 40 50 60 70 80 90 FLJ002 ITGAMSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLVFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|169 ITGAMSTEGPSLASSPAISPLAFLSAPVTPGTLAEATDPLPMLIALACIFLLLATCLLFM 120 130 140 150 160 170 100 110 120 130 140 150 FLJ002 TLCKPAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 TLCKPAALDPSRRRAHECMPHHPGSPSEPQLRLWKRLGSLRLSLHSFRHGRPTVPRQPLP 180 190 200 210 220 230 160 FLJ002 GPEDNRSHCDYMESTKM ::::::::::::::::: gi|169 GPEDNRSHCDYMESTKM 240 250 >>gi|187470854|sp|Q8TEF2.2|CJ105_HUMAN RecName: Full=Unc (133 aa) initn: 927 init1: 927 opt: 927 Z-score: 1038.9 bits: 198.3 E(): 3.6e-49 Smith-Waterman score: 927; 100.000% identity (100.000% similar) in 133 aa overlap (35-167:1-133) 10 20 30 40 50 60 FLJ002 VERQESEGLPRVRPPVHGRPQATAAGITGAMSTEGPSLASSPAISPLAFLSAPVTPGTLA :::::::::::::::::::::::::::::: gi|187 MSTEGPSLASSPAISPLAFLSAPVTPGTLA 10 20 30 70 80 90 100 110 120 FLJ002 EATDPLPMLIALACIFLLLATCLVFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQLRLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 EATDPLPMLIALACIFLLLATCLVFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQLRLW 40 50 60 70 80 90 130 140 150 160 FLJ002 KRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM ::::::::::::::::::::::::::::::::::::::::::: gi|187 KRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM 100 110 120 130 >>gi|119574818|gb|EAW54433.1| hCG2024862 [Homo sapiens] (133 aa) initn: 923 init1: 923 opt: 923 Z-score: 1034.5 bits: 197.4 E(): 6.4e-49 Smith-Waterman score: 923; 99.248% identity (100.000% similar) in 133 aa overlap (35-167:1-133) 10 20 30 40 50 60 FLJ002 VERQESEGLPRVRPPVHGRPQATAAGITGAMSTEGPSLASSPAISPLAFLSAPVTPGTLA :::::::::::::::::::::::::::::: gi|119 MSTEGPSLASSPAISPLAFLSAPVTPGTLA 10 20 30 70 80 90 100 110 120 FLJ002 EATDPLPMLIALACIFLLLATCLVFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQLRLW :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|119 EATDPLPMLIALACIFLLLATCLLFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQLRLW 40 50 60 70 80 90 130 140 150 160 FLJ002 KRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM ::::::::::::::::::::::::::::::::::::::::::: gi|119 KRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM 100 110 120 130 >>gi|149038758|gb|EDL93047.1| rCG22048 [Rattus norvegicu (128 aa) initn: 611 init1: 578 opt: 605 Z-score: 682.8 bits: 132.3 E(): 2.5e-29 Smith-Waterman score: 605; 66.165% identity (84.962% similar) in 133 aa overlap (35-167:1-128) 10 20 30 40 50 60 FLJ002 VERQESEGLPRVRPPVHGRPQATAAGITGAMSTEGPSLASSPAISPLAFLSAPVTPGTLA :.::: :: ::. ::..:.: :: . gi|149 MNTEGSSLPISPT-----FLTTPATSGTYS 10 20 70 80 90 100 110 120 FLJ002 EATDPLPMLIALACIFLLLATCLVFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQLRLW .:.::.:.:.::::::::::.::.:: ::::.::::.:. :.::::::: :::::.:::: gi|149 QAADPVPILLALACIFLLLASCLLFMMLCKPTALDPGRQGARECMPHHPVSPSEPRLRLW 30 40 50 60 70 80 130 140 150 160 FLJ002 KRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM ::::::: ::::::.::::. . :::: ::.:. :. :.::: gi|149 KRLGSLRRSLHSFRRGRPTIQQCPLPGLEDHRGDYDWTEATKM 90 100 110 120 >>gi|148700224|gb|EDL32171.1| mCG55969 [Mus musculus] (128 aa) initn: 607 init1: 573 opt: 591 Z-score: 667.3 bits: 129.4 E(): 1.8e-28 Smith-Waterman score: 591; 64.662% identity (84.211% similar) in 133 aa overlap (35-167:1-128) 10 20 30 40 50 60 FLJ002 VERQESEGLPRVRPPVHGRPQATAAGITGAMSTEGPSLASSPAISPLAFLSAPVTPGTLA :.::: :: .:: .::..:.. :: . gi|148 MNTEGSSL-----LSPPTFLTTPAASGTST 10 20 70 80 90 100 110 120 FLJ002 EATDPLPMLIALACIFLLLATCLVFMTLCKPAALDPSRRRAHECMPHHPGSPSEPQLRLW .:.::.:.::::::::::::.::.:: ::::.::::.:: :.::::::: :::::.:::: gi|148 QAADPVPILIALACIFLLLASCLLFMMLCKPTALDPGRRGARECMPHHPVSPSEPRLRLW 30 40 50 60 70 80 130 140 150 160 FLJ002 KRLGSLRLSLHSFRHGRPTVPRQPLPGPEDNRSHCDYMESTKM ::::::: ::::::.:::.. : ::: .:.:. :. :.: : gi|148 KRLGSLRRSLHSFRRGRPAIQRCPLPDSDDHRGDYDWTEATMM 90 100 110 120 167 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 00:44:32 2009 done: Sat Feb 28 00:48:50 2009 Total Scan time: 616.000 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]