# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj08101.fasta.huge -Q ../query/FLJ00340.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00340, 187 aa vs ./tmplib.10216 library 2210807 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.6003+/-0.00419; mu= 18.8269+/- 0.284 mean_var=104.5540+/-22.986, 0's: 0 Z-trim: 11 B-trim: 0 in 0/40 Lambda= 0.125431 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1113 ( 1131 res) hj06379(revised) (1131) 324 69.2 7.8e-13 KIAA1125 ( 1205 res) hk07594 (1205) 192 45.3 1.3e-05 KIAA1090 ( 715 res) hk03921a ( 715) 155 38.2 0.001 KIAA1696 ( 635 res) fj12768 ( 635) 151 37.4 0.0016 KIAA1506 ( 3309 res) ff04330 (3309) 137 36.2 0.02 KIAA0383 ( 1781 res) hh00708s1 (1781) 131 34.6 0.031 KIAA0314 ( 1899 res) af02425 (1899) 129 34.3 0.042 KIAA1542 ( 1654 res) hh03408 (1654) 127 33.8 0.05 KIAA0043 ( 731 res) ha01331 ( 731) 118 31.5 0.11 KIAA1476 ( 2142 res) fj04778s1 (2142) 113 31.5 0.33 KIAA0304 ( 2415 res) af07172 (2415) 113 31.6 0.34 KIAA1045 ( 427 res) hh00656 ( 427) 105 28.8 0.43 FLJ00295 ( 770 res) sh03877 ( 770) 105 29.2 0.56 FLJ00416 ( 221 res) sj04686 ( 221) 96 26.6 0.99 KIAA1823 ( 377 res) fj18328 ( 377) 97 27.2 1.1 KIAA1740 ( 1119 res) pj00674 (1119) 100 28.6 1.2 KIAA0333 ( 1223 res) pf04993 (1223) 95 27.8 2.4 KIAA1965 ( 565 res) pj02601 ( 565) 91 26.5 2.8 KIAA1285 ( 785 res) hh11563(revised) ( 785) 91 26.7 3.3 KIAA1399 ( 452 res) hk07377 ( 452) 89 25.9 3.3 KIAA1403 ( 1337 res) fg02666s1 (1337) 91 27.1 4.2 KIAA0558 ( 1145 res) hh01485 (1145) 90 26.8 4.4 KIAA1947 ( 608 res) fh23660 ( 608) 85 25.4 6.2 KIAA1044 ( 646 res) fh03989 ( 646) 85 25.5 6.4 KIAA0718 ( 742 res) hk01073 ( 742) 84 25.4 7.7 KIAA0519 ( 931 res) hg01237 ( 931) 84 25.6 8.5 KIAA0555 ( 802 res) hh00882 ( 802) 83 25.3 9 KIAA0570 ( 3412 res) hk03615s2 (3412) 88 27.3 9.3 KIAA0960 ( 1502 res) hj05779s1 (1502) 85 26.1 9.3 KIAA1409 ( 2461 res) af00533 (2461) 86 26.7 10 KIAA0231 ( 823 res) fk16230 ( 823) 82 25.1 10 KIAA0463 ( 1963 res) hg00942 (1963) 85 26.4 11 KIAA0416 ( 529 res) hh00236 ( 529) 80 24.4 11 KIAA1907 ( 1737 res) ah00504 (1737) 83 25.9 13 FLJ00133 ( 1282 res) sh02303 (1282) 81 25.3 14 KIAA0924 ( 617 res) hh02883 ( 617) 77 24.0 17 KIAA0149 ( 830 res) ha01221 ( 830) 78 24.4 17 KIAA1195 ( 717 res) fg01739 ( 717) 77 24.1 18 KIAA0780 ( 1100 res) hk05362 (1100) 78 24.6 19 KIAA1781 ( 974 res) fg06971(revised) ( 974) 77 24.4 21 KIAA1588 ( 613 res) fj08823 ( 613) 75 23.6 22 KIAA1464 ( 621 res) fh18679 ( 621) 75 23.6 22 KIAA0814 ( 1559 res) fh16048 (1559) 78 24.9 23 KIAA1313 ( 398 res) fh12154 ( 398) 73 22.9 23 KIAA1891 ( 780 res) fk02783 ( 780) 75 23.8 24 KIAA0517 ( 792 res) hg00752 ( 792) 75 23.8 24 KIAA0564 ( 1441 res) hh01811 (1441) 77 24.7 25 KIAA1263 ( 850 res) hj00608 ( 850) 75 23.9 25 KIAA0996 ( 869 res) hk07913 ( 869) 75 23.9 25 KIAA1431 ( 891 res) fj00022 ( 891) 75 23.9 26 >>KIAA1113 ( 1131 res) hj06379(revised) (1131 aa) initn: 317 init1: 148 opt: 324 Z-score: 323.7 bits: 69.2 E(): 7.8e-13 Smith-Waterman score: 324; 31.633% identity (56.633% similar) in 196 aa overlap (3-186:890-1076) 10 20 30 FLJ003 PENSNICEVCNKWGRLFCCDTCPRSFHEHCHI : . : ::.. : :.::. ::. :: ::. KIAA11 SLVNGKSPIRSLMHRSARIGGDGNNKDDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHV 860 870 880 890 900 910 40 50 60 70 80 FLJ003 PSVEA-NKNPWSCIFCR---IKTIQERCPESQSGHQESEVLMRQMLPEEQLKCEFLLLKV :.. . .. : : ::: .. : . : :... . . : .: ::: ::: . KIAA11 PTLLSFPSGDWICTFCRDIGKPEVEYDCDNLQ--HSKKGKTAQGLSPVDQRKCERLLLYL 920 930 940 950 960 970 90 100 110 120 130 140 FLJ003 YCDSKSCFF-----ASEPYYNREGSQGPQKPMWLNKVKTSLNE---QTYTRVEGFVQDMR :: : : :: : : . .::: :. :: .:.. : : . :: :.: KIAA11 YCHELSIEFQEPVPASIPNYYKI----IKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVR 980 990 1000 1010 1020 1030 150 160 170 180 FLJ003 LIFHNHKEFYREDKFTRLGIQVQDIFEKNFRNIFAIQETSKNIIMFI :::.: ..: . : ... ..:.: :.. . ...: . .. KIAA11 LIFKNCERFNEMMKVVQVYADTQEI---NLKADSEVAQAGKAVALYFEDKLTEIYSDRTF 1040 1050 1060 1070 1080 1090 KIAA11 APLPEFEQEEDDGEVTEDSDEDFIQPRRKRLKSDERPVHIK 1100 1110 1120 1130 >>KIAA1125 ( 1205 res) hk07594 (1205 aa) initn: 111 init1: 111 opt: 192 Z-score: 194.4 bits: 45.3 E(): 1.3e-05 Smith-Waterman score: 198; 28.082% identity (54.795% similar) in 146 aa overlap (3-145:106-242) 10 20 30 FLJ003 PENSNICEVCNKWGRLFCCDTCPRSFHEHCHI :. : ::.. :...::. ::: .: .: KIAA11 EQSELRHGPFYYMKQPLTTDPVDVVPQDGRNDFYCWVCHREGQVLCCELCPRVYHAKCLR 80 90 100 110 120 130 40 50 60 70 80 90 FLJ003 PSVEANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLK--CEFLLLKVYC . : .. : : :. :. : : :.:: . :: :::. .: . :. KIAA11 LTSEP-EGDWFCPECEKITVAE-CIETQSKAMT-------MLTIEQLSYLLKFAIQKMKQ 140 150 160 170 180 100 110 120 130 140 FLJ003 DSKSCFFASEPYYNR-EGSQGPQKPMWLNKVKTSLNEQTYTRVEGFVQDMRLIFHNHKEF . . : : .. . .. .:: : .. . ... : .:.:. : . :.:: KIAA11 PGTDAFQKPVPLEQHPDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIY 190 200 210 220 230 240 150 160 170 180 FLJ003 YREDKFTRLGIQVQDIFEKNFRNIFAIQETSKNIIMFI KIAA11 NGGNHKLTQIAKVVIKICEHEMNEIEVCPECYLAACQKRDNWFCEPCSNPHPLVWAKLKG 250 260 270 280 290 300 >>KIAA1090 ( 715 res) hk03921a (715 aa) initn: 154 init1: 116 opt: 155 Z-score: 160.0 bits: 38.2 E(): 0.001 Smith-Waterman score: 155; 41.304% identity (60.870% similar) in 46 aa overlap (3-48:180-223) 10 20 30 FLJ003 PENSNICEVCNKWGRLFCCDTCPRSFHEHCHI : . : ::.: : :.::..:: .:: : KIAA10 AAGCSVIASNSIICTAHFTARKGKRHHAHVNVSWCFVCSKGGSLLCCESCPAAFHPDCL- 150 160 170 180 190 200 40 50 60 70 80 90 FLJ003 PSVEANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLKCEFLLLKVYCDS ..: . : : :: KIAA10 -NIEMPDGSWFCNDCRAGKKLHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQKMKHEIGE 210 220 230 240 250 260 >>KIAA1696 ( 635 res) fj12768 (635 aa) initn: 116 init1: 116 opt: 151 Z-score: 156.5 bits: 37.4 E(): 0.0016 Smith-Waterman score: 151; 26.056% identity (52.817% similar) in 142 aa overlap (5-142:444-580) 10 20 30 FLJ003 PENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPS ..: :: : :.:. :::: : .: : : KIAA16 SAVTYLNSTMHPGTRKRANEEHWPKGDIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPP 420 430 440 450 460 470 40 50 60 70 80 90 FLJ003 VEA-NKNPWSCIFCRIKTIQERCPESQSGHQ---ESEVLMRQMLPEEQLKCEFLLLKVYC ... :. : : :. . .... : .: . .. ::. : ::: KIAA16 LKTIPKGMWICPRCQDQMLKKEEAIPWPGTLAIVHSYIAYKAAKEEEKQK----LLKWSS 480 490 500 510 520 100 110 120 130 140 150 FLJ003 DSKSCFFASEPYYNREGSQGPQKPMWLNKVKTSLNEQTYTRVEGFVQDMRLIFHNHKEFY : :. : .. :.. .: : .... . ... .. .: : .::: KIAA16 DLKQEREQLEQKV-KQLSNSISKCMEMKNTILARQKEMHSSLEKVKQLIRLIHGIDLSKP 530 540 550 560 570 580 160 170 180 FLJ003 REDKFTRLGIQVQDIFEKNFRNIFAIQETSKNIIMFI KIAA16 VDSEATVGAISNGPDCTPPANAATSTPAPSPSSQSCTANCNQGEETK 590 600 610 620 630 >>KIAA1506 ( 3309 res) ff04330 (3309 aa) initn: 77 init1: 52 opt: 137 Z-score: 137.0 bits: 36.2 E(): 0.02 Smith-Waterman score: 139; 25.781% identity (50.781% similar) in 128 aa overlap (6-127:454-565) 10 20 30 FLJ003 PENSNICEVCNKW---GRLFCCDTCPRSFHEHCHI .::.:.: :::. :: : :.: .: KIAA15 QCGQCYHPYCVSIKITKVVLSKGWRCLECTVCEACGKATDPGRLLLCDDCDISYHTYCLD 430 440 450 460 470 480 40 50 60 70 80 90 FLJ003 PSVEA-NKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLKCEFLLLKVYCD : ... :. :.: .: . ..: ...: .: .. .: . : KIAA15 PPLQTVPKGGWKCKWC---VWCRHCGATSAG-------LRCEWQNNYTQC------APCA 490 500 510 520 100 110 120 130 140 FLJ003 S-KSCFFASEPYYNREGS-QGPQKPMWLNKVKTSLNEQTYTRVEGFVQDMRLIFHNHKEF : .:: . : ... : : :.. : .:: . KIAA15 SLSSCPVCYRNYREEDLILQCRQCDRWMHAVCQNLNTEEEVENVADIGFDCSMCRPYMPA 530 540 550 560 570 580 150 160 170 180 FLJ003 YREDKFTRLGIQVQDIFEKNFRNIFAIQETSKNIIMFI KIAA15 SNVPSSDCCESSLVAQIVTKVKELDPPKTYTQDGVCLTESGMTQLQSLTVTVPRRKRSKP 590 600 610 620 630 640 >>KIAA0383 ( 1781 res) hh00708s1 (1781 aa) initn: 144 init1: 71 opt: 131 Z-score: 133.3 bits: 34.6 E(): 0.031 Smith-Waterman score: 131; 29.032% identity (51.613% similar) in 93 aa overlap (7-94:272-362) 10 20 30 FLJ003 PENSNICEVCNKWGR----LFCCDTCPRSFH-EHCH : .: :: .. ::.: :.:: : : KIAA03 SSGHPSCLKFCPELTTNVKALRWQCIECKTCSACRVQGRNADNMLFCDSCDRGFHMECCD 250 260 270 280 290 300 40 50 60 70 80 90 FLJ003 IPSVEANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLKCEFLLLKVYCD : . :. : : :: : .. . .... . . :...:: . ::.: : KIAA03 PPLSRMPKGMWICQVCRPKKKGRKLLHEKAAQIKRRYAKPIGRPKNKLKQR--LLSVTSD 310 320 330 340 350 100 110 120 130 140 150 FLJ003 SKSCFFASEPYYNREGSQGPQKPMWLNKVKTSLNEQTYTRVEGFVQDMRLIFHNHKEFYR : KIAA03 EGSMNAFTGRGSPDTEIKINIKQESADVNVIGNKDVVTEEDLDVFKQAQELSWEKIECES 360 370 380 390 400 410 >>KIAA0314 ( 1899 res) af02425 (1899 aa) initn: 89 init1: 89 opt: 129 Z-score: 131.2 bits: 34.3 E(): 0.042 Smith-Waterman score: 138; 23.556% identity (46.667% similar) in 225 aa overlap (3-174:1669-1892) 10 20 FLJ003 PENSNICEVCNKWGR---LFCCDTCPRSFHEH :. : :: : :. :: : :. : . KIAA03 RQTLERCRSAAQVCLCLGQLERSIAWEKSVNKVTCLVCRKGDNDEFLLLCDGCDRGCHIY 1640 1650 1660 1670 1680 1690 30 40 50 60 FLJ003 CHIPSVEA-NKNPWSCIFCRIKTIQ----------ERCPESQSGH---------QESEVL :: :..:: .. : : : . .. .: . .::. .. .:: KIAA03 CHRPKMEAVPEGDWFCTVCLAQQVEGEFTQKPGFPKRGQKRKSGYSLNFSEGDGRRRRVL 1700 1710 1720 1730 1740 1750 70 80 90 100 FLJ003 MR-QMLP-------EEQLK------------------CEFLLLKVYCDSKSCFFASEPYY .: . : :: :. ::..:... . . : :: KIAA03 LRGRESPAAGPRYSEEGLSPSKRRRLSMRNHHSDLTFCEIILMEMESHDAAWPFL-EPVN 1760 1770 1780 1790 1800 1810 110 120 130 140 150 FLJ003 NREGS---QGPQKPMWLNKVKTSLNEQTYTRVEGFVQDMRLIFHNHKEFYRED-KFTRLG : : . ..:: .. .. : . :: : :. : :.: : . : ..: . . : KIAA03 PRLVSGYRRIIKNPMDFSTMRERLLRGGYTSSEEFAADALLVFDNCQTFNEDDSEVGKAG 1820 1830 1840 1850 1860 1870 160 170 180 FLJ003 IQVQDIFEKNFRNIFAIQETSKNIIMFI .. .::. ..... KIAA03 HIMRRFFESRWEEFYQGKQANL 1880 1890 >>KIAA1542 ( 1654 res) hh03408 (1654 aa) initn: 91 init1: 65 opt: 127 Z-score: 129.7 bits: 33.8 E(): 0.05 Smith-Waterman score: 127; 25.641% identity (53.846% similar) in 78 aa overlap (2-75:186-263) 10 20 FLJ003 PENSNICEVC---NKWGRLFCCDTCPRSFHE :. ..:::: .. ::. :: : ..: KIAA15 LFKCICIRAQFGGKILKKIPVENTKASEEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHM 160 170 180 190 200 210 30 40 50 60 70 80 FLJ003 HCHIPSV-EANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLKCEFLLLK .: : . :. . : : : . . ...: .:. ...: KIAA15 ECLDPPLQEVPVDEWFCPECAAPGVVLAADAGPVSEEEVSLLLADVVPTTSRLRPRAGRT 220 230 240 250 260 270 90 100 110 120 130 140 FLJ003 VYCDSKSCFFASEPYYNREGSQGPQKPMWLNKVKTSLNEQTYTRVEGFVQDMRLIFHNHK KIAA15 RAIARTRQSERVRATVNRNRISTARRVQHTPGRLGSSLLDEAIEAVATGLSTAVYQRPLT 280 290 300 310 320 330 >>KIAA0043 ( 731 res) ha01331 (731 aa) initn: 112 init1: 88 opt: 118 Z-score: 123.8 bits: 31.5 E(): 0.11 Smith-Waterman score: 118; 31.667% identity (66.667% similar) in 60 aa overlap (112-170:358-417) 90 100 110 120 130 140 FLJ003 EFLLLKVYCDSKSCFFASEPYYNREGSQGPQKPMWLNKVKTSLNEQTYTRVEGFVQDMRL ..:: :. :: ... . : ..::. :.:: KIAA00 LSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRL 330 340 350 360 370 380 150 160 170 180 FLJ003 IFHNHKEFYRED-KFTRLGIQVQDIFEKNFRNIFAIQETSKNIIMFI .: : .. : . . .. ..::.:: : KIAA00 MFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPVEAPALPAPAAPMVSKGAESSRS 390 400 410 420 430 440 >>KIAA1476 ( 2142 res) fj04778s1 (2142 aa) initn: 85 init1: 85 opt: 113 Z-score: 115.1 bits: 31.5 E(): 0.33 Smith-Waterman score: 126; 23.077% identity (44.872% similar) in 234 aa overlap (7-176:1908-2141) 10 20 30 FLJ003 PENSNICEVCNKWGR---LFCCDTCPRSFHEHCHIP :..: : :. :: : .. : .:: : KIAA14 SEARSAAQVALCIQQLQKSIAWEKSIMKVYCQICRKGDNEELLLLCDGCDKGCHTYCHRP 1880 1890 1900 1910 1920 1930 40 50 60 FLJ003 SVEANKN-PWSCIFC---------RIKTIQ---ERCPESQSGHQ--------------ES .. . . : : : .:: .. .. ::..:.. : KIAA14 KITTIPDGDWFCPACIAKASGQTLKIKKLHVKGKKTNESKKGKKVTLTGDTEDEDSASTS 1940 1950 1960 1970 1980 1990 70 80 90 100 FLJ003 EVLMRQMLPEEQLKCE------------FLLLKV--YCDSKS---C-FFASE-------- : : .. : : : .: :::. : .. .: KIAA14 SSLKRGNKDLKKRKMEENTSINLSKQESFTSVKKPKRDDSKDLALCSMILTEMETHEDAW 2000 2010 2020 2030 2040 2050 110 120 130 140 150 FLJ003 PYY---NREGSQGPQK----PMWLNKVKTSLNEQTYTRVEGFVQDMRLIFHNHKEFYRED :. : . : .: :: .. .. .:. : .: :. :.::.: : . : ..: KIAA14 PFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDD 2060 2070 2080 2090 2100 2110 160 170 180 FLJ003 K-FTRLGIQVQDIFEKNFRNIFAIQETSKNIIMFI . . : : ... :::.. . : . KIAA14 SDIGRAGHNMRKYFEKKWTDTFKVS 2120 2130 2140 187 residues in 1 query sequences 2210807 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:59 2009 done: Fri Feb 27 10:52:00 2009 Total Scan time: 0.350 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]