# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj08743.fasta.huge -Q ../query/FLJ00249.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00249, 419 aa vs ./tmplib.10216 library 2210575 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.7955+/-0.00495; mu= 6.0744+/- 0.332 mean_var=149.1275+/-33.634, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.105026 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00372 ( 396 res) sh06918 ( 396) 1867 294.0 1.3e-80 KIAA1521 ( 1484 res) ha02560 (1484) 200 41.9 0.00036 FLJ00040 ( 1060 res) as00040 (1060) 150 34.2 0.054 KIAA1563 ( 1658 res) fh20460s1 (1658) 147 34.0 0.1 KIAA0099 ( 1175 res) hk05583 (1175) 127 30.8 0.65 KIAA0819 ( 989 res) hh01037 ( 989) 116 29.0 1.8 KIAA0039 ( 491 res) ha02030 ( 491) 109 27.7 2.3 KIAA1818 ( 1157 res) hg00622 (1157) 114 28.8 2.5 KIAA0575 ( 952 res) hj00216 ( 952) 104 27.2 6.3 KIAA0442 ( 1266 res) hh03913 (1266) 105 27.5 6.9 KIAA0226 ( 973 res) fg02838 ( 973) 103 27.1 7.1 KIAA1865 ( 723 res) fj14303 ( 723) 100 26.5 7.9 KIAA0004 ( 1307 res) ha00065 (1307) 104 27.3 7.9 KIAA0311 ( 2324 res) hg00112s1 (2324) 107 28.0 8.7 KIAA0481 ( 732 res) hm00132 ( 732) 99 26.3 8.8 KIAA0886 ( 1233 res) hk07722 (1233) 102 27.0 9.3 KIAA0627 ( 1324 res) hh01026s2 (1324) 102 27.0 9.8 KIAA0473 ( 937 res) hh00220 ( 937) 97 26.1 13 FLJ00253 ( 349 res) sj09455 ( 349) 89 24.5 15 KIAA0363 ( 1522 res) hh00103 (1522) 99 26.7 15 KIAA0612 ( 1810 res) hg00654s1 (1810) 100 26.9 15 KIAA0559 ( 1212 res) hh01510 (1212) 96 26.1 17 KIAA1014 ( 1050 res) hk02388s2 (1050) 95 25.9 17 KIAA0705 ( 1483 res) hg03359s1 (1483) 97 26.3 18 KIAA0035 ( 707 res) ha01976 ( 707) 91 25.1 20 KIAA0292 ( 1716 res) ha06353 (1716) 97 26.4 20 KIAA0203 ( 1593 res) ha02320 (1593) 96 26.2 21 KIAA1553 ( 670 res) fh17011 ( 670) 90 24.9 21 KIAA0232 ( 1402 res) pf00983 (1402) 95 26.0 21 FLJ00225 ( 402 res) sj06250 ( 402) 85 24.0 25 KIAA0239 ( 849 res) ha06313 ( 849) 90 25.0 25 KIAA0619 ( 1428 res) hg04117 (1428) 93 25.7 27 KIAA0616 ( 634 res) hg03623 ( 634) 87 24.5 28 KIAA0820 ( 892 res) bg00036 ( 892) 89 24.9 29 KIAA0779 ( 320 res) hk05356 ( 320) 82 23.4 29 FLJ00101 ( 294 res) as00101 ( 294) 81 23.2 30 KIAA1788 ( 413 res) fh22801 ( 413) 83 23.7 31 KIAA1078 ( 1365 res) fg04938 (1365) 91 25.4 32 FLJ00090 ( 770 res) as00090 ( 770) 87 24.6 32 KIAA1650 ( 797 res) hk02174 ( 797) 87 24.6 33 KIAA0802 ( 1578 res) hh07536 (1578) 91 25.5 35 KIAA1187 ( 813 res) fk03027 ( 813) 86 24.4 37 KIAA0403 ( 416 res) hg01159 ( 416) 81 23.4 39 KIAA1853 ( 708 res) hj04155 ( 708) 84 24.1 41 KIAA1407 ( 744 res) fh00894(revised) ( 744) 84 24.1 43 FLJ00278 ( 176 res) sh01653 ( 176) 74 22.0 44 KIAA0940 ( 699 res) hh04894 ( 699) 83 23.9 45 KIAA1416 ( 1966 res) hh02957s1 (1966) 90 25.4 46 KIAA1917 ( 702 res) fk00028 ( 702) 83 23.9 46 KIAA0375 ( 1540 res) hh00360s1 (1540) 88 25.0 47 >>FLJ00372 ( 396 res) sh06918 (396 aa) initn: 1867 init1: 1867 opt: 1867 Z-score: 1540.6 bits: 294.0 E(): 1.3e-80 Smith-Waterman score: 1867; 99.662% identity (100.000% similar) in 296 aa overlap (1-296:81-376) 10 20 30 FLJ002 TQAMALETPTPGPPREGQSPASQAGTQHPP :::::::::::::::::::::::::::::: FLJ003 QPPVPPPRKKRISRQLASTLPAPLENAELCTQAMALETPTPGPPREGQSPASQAGTQHPP 60 70 80 90 100 110 40 50 60 70 80 90 FLJ002 AQATAHSQSSPEFKGSLASLSDSLGVSVMATDQDSYSTSSTEEELEQFSSPSVKKKPSMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 AQATAHSQSSPEFKGSLASLSDSLGVSVMATDQDSYSTSSTEEELEQFSSPSVKKKPSMI 120 130 140 150 160 170 100 110 120 130 140 150 FLJ002 LGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 LGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQ 180 190 200 210 220 230 160 170 180 190 200 210 FLJ002 TSSTEMLQEIRTMMTQLKSYLLQSTELKALVDPALHSEEELEAIVESALYKCVLKPLKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 TSSTEMLQEIRTMMTQLKSYLLQSTELKALVDPALHSEEELEAIVESALYKCVLKPLKEA 240 250 260 270 280 290 220 230 240 250 260 270 FLJ002 INSCLHQIHSKDGSLQQLKENQLVILATTTTDLGVTTSVPEVPMMEKILQKFTSMHKAYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 INSCLHQIHSKDGSLQQLKENQLVILATTTTDLGVTTSVPEVPMMEKILQKFTSMHKAYS 300 310 320 330 340 350 280 290 300 310 320 330 FLJ002 PEKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTEMLLNVEYMMELM :::::::::::::::::::::::::. FLJ003 PEKKISILLKTCKLIYDSMALGNPGQWAAGRGLGEELSLYGSMTPP 360 370 380 390 >>KIAA1521 ( 1484 res) ha02560 (1484 aa) initn: 178 init1: 83 opt: 200 Z-score: 168.2 bits: 41.9 E(): 0.00036 Smith-Waterman score: 203; 24.481% identity (57.261% similar) in 241 aa overlap (124-357:1263-1481) 100 110 120 130 140 150 FLJ002 ARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQTSS : ..: . . ..::.. .: .:.. KIAA15 TQAHLERLLQRVLRDKEVANRYFTTVCVRLLLESKEKKIREFIQDFQ--KLTAADDKTAQ 1240 1250 1260 1270 1280 1290 160 170 180 190 200 210 FLJ002 TE-MLQEIRTMMTQLKSYLLQSTELKALVDPALHSEEELEAIVESALYKCVLKPLKEAIN .: .:: . :.: . . :.. . : : : .: : . ..: .. : KIAA15 VEDFLQFLYGAMAQ--DVIWQNASEEQLQDAQL----AIERSVMNRIFKLAFYP------ 1300 1310 1320 1330 220 230 240 250 260 FLJ002 SCLHQIHSKDGSL--QQLKENQLVILATTTTDLGVTTSVPEVPMME----KILQKFTSMH ..::.. .:. .... :. ..: . ..::: . : . ... .. KIAA15 -------NQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTIS 1340 1350 1360 1370 1380 1390 270 280 290 300 310 320 FLJ002 KAYSPEKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTEMLLNVEYM .:. :.. .:. :. :.. ..:.: . :::::.:::..:: ..: .: .:.:. KIAA15 AYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIKANPPCLLSTVQYI 1400 1410 1420 1430 1440 1450 330 340 350 360 370 380 FLJ002 MELMDPALQLGEGSYYLTTTYGALEHIKSYDKITVTRQLSVEVQDSIHRWERRRTLNKAR .. :. :: ::. .:.: ::. : KIAA15 SSFYASCLS-GEESYWWMQFTAAVEFIKTIDDRK 1460 1470 1480 390 400 410 FLJ002 ASRSSVQVRPESGRGPVGPCPRHHPCCLLAKEP >>FLJ00040 ( 1060 res) as00040 (1060 aa) initn: 160 init1: 132 opt: 150 Z-score: 129.1 bits: 34.2 E(): 0.054 Smith-Waterman score: 166; 22.768% identity (56.696% similar) in 224 aa overlap (138-354:163-373) 110 120 130 140 150 160 FLJ002 HAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQTSSTEMLQEIRT---MM : .. :.. :. . ..: . .. FLJ000 SEEPLAPSDPFSLKTIEDVREFLGRHSERFDRNIASFHRTFRECERKSLRHHIDSANALY 140 150 160 170 180 190 170 180 190 200 210 220 FLJ002 TQLKSYLLQSTELKALVDPALHS---EEELEAIVESALYKCVLKPLKEAINSCLHQIHSK :. . ::....:: :. . .. .: :. .:. ..: . : ... FLJ000 TKCLQQLLRDSHLKMLAKQEAQMNLMKQAVEIYVHHEIYNLIFKYVGTMEASEDAAFNKI 200 210 220 230 240 250 230 240 250 260 270 280 FLJ002 DGSLQQLKENQLVILATTTTDLGVTTSVPEVPM-MEKILQKFTSMHKAYSPEKKISILLK :::.:... :.:: :: . . . .......: ::..:. : : FLJ000 TRSLQDLQQK----------DIGVK---PEFSFNIPRAKRELAQLNKCTSPQQKLVCLRK 260 270 280 290 290 300 310 320 330 340 FLJ002 TCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTEMLLNVEYMMELMDPALQLGEGS . .:: .: . . . :::.: ::.:.:..... . . :. :. .. .: : . FLJ000 VVQLITQSPSQRVNLETMCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFSSLAKDELG 300 310 320 330 340 350 350 360 370 380 390 400 FLJ002 YYLTTTYGALEHIKSYDKITVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQVRPESGR : ::. .:.:.:. FLJ000 YCLTSFEAAIEYIRQGSLSAKPPESEGFGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGN 360 370 380 390 400 410 >>KIAA1563 ( 1658 res) fh20460s1 (1658 aa) initn: 119 init1: 119 opt: 147 Z-score: 124.1 bits: 34.0 E(): 0.1 Smith-Waterman score: 147; 25.000% identity (58.750% similar) in 160 aa overlap (196-354:1502-1653) 170 180 190 200 210 220 FLJ002 QLKSYLLQSTELKALVDPALHSEEELEAIVESALYKCVLKPLKEAINSCLHQIHSKDGSL :. ..:::. :. . : . : KIAA15 VTSSGLLLPVLLPRLYPPLFMLYALDNDREEDIYWECVLRLNKQPDIALLGFL----GVQ 1480 1490 1500 1510 1520 230 240 250 260 270 280 FLJ002 QQLKENQLVILATTTTDLGVTTSVPEVPMMEKILQKFTSMHKAYSPEKKISILLKTCKLI ... : ::. . : .: .. . .: ::.... ...: :.... .: . : KIAA15 RKFWPATLSILGESKKVLPTTKDACFASAVE-CLQQIST---TFTPSDKLKVIQQTFEEI 1530 1540 1550 1560 1570 1580 290 300 310 320 330 340 FLJ002 YDS-MALGNPGKPYGADDFLPVLMYVLARSNLTEMLLNVEYMMELMDPALQLGEGSYYLT .: .: . .. ::..::..::. :. . .. .:. . .:::: :: :: . ..: KIAA15 SQSVLASLHEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFT 1590 1600 1610 1620 1630 1640 350 360 370 380 390 400 FLJ002 TTYGALEHIKSYDKITVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQVRPESGRGPVG : . .:. KIAA15 TLKACYYQIQREKLN 1650 >>KIAA0099 ( 1175 res) hk05583 (1175 aa) initn: 93 init1: 65 opt: 127 Z-score: 109.7 bits: 30.8 E(): 0.65 Smith-Waterman score: 127; 24.545% identity (53.182% similar) in 220 aa overlap (8-213:725-934) 10 20 30 FLJ002 TQAMALETPTPGP---PREGQSPASQAGTQHPPAQAT . .::: : .:.:. .: :: . . KIAA00 DSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGH---SQTPPPSLS 700 710 720 730 740 750 40 50 60 70 80 FLJ002 AHSQSSPEFKGSLASLSDSLGVSVMATDQDSYSTSSTEEELEQ-----FSSPSVKKKPSM .:..:: :.:.. : .:. . .: ..:. : . ::: .. : KIAA00 SHGSSSSLNLGGLTNGSGRY-ISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSD 760 770 780 790 800 810 90 100 110 120 130 140 FLJ002 ILGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDK-GSYFGSLVQDYKVYSLEMMA .. ..: :: . .: . . :. :.. ...:..::. :: : .: :. KIAA00 VMPSGRSRL-LEDFRNNRYPNLQL-REIAGHIMEFSQDQHGSRFIQL----KLERATPAE 820 830 840 850 860 150 160 170 180 190 200 FLJ002 RQTSSTEMLQEIRTMMTQL-KSYLLQSTELKALVDPALHSEEELEAIVES---ALYKC-V :: .:.:: . ... .:..:. . .. : :.... : : .: : : KIAA00 RQLVFNEILQAAYQLNVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRV 870 880 890 900 910 920 210 220 230 240 250 260 FLJ002 LKPLKEAINSCLHQIHSKDGSLQQLKENQLVILATTTTDLGVTTSVPEVPMMEKILQKFT .. : : : KIAA00 IQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKG 930 940 950 960 970 980 >>KIAA0819 ( 989 res) hh01037 (989 aa) initn: 140 init1: 59 opt: 116 Z-score: 101.6 bits: 29.0 E(): 1.8 Smith-Waterman score: 116; 23.750% identity (55.000% similar) in 240 aa overlap (5-232:622-852) 10 20 30 FLJ002 TQAMALETPTPGPPREGQSPASQA--GTQHPPAQ : .:. : :. .::. . :...: . KIAA08 KSQALRDAMARQLSRMQQMELASGAPRPRKASSAPSQGKERRPDSPTRPTLRGSEEPTLK 600 610 620 630 640 650 40 50 60 70 80 FLJ002 ATAHSQS--SP--EFKGSLASLSDSLGVSVMATDQDS-YSTSSTEEELEQFSSPSVKKKP : :. :: . : .:...: : : . ..: .: ...: .. . .:: KIAA08 HEATSEEVLSPPSDSGGPDGSFTSSEGSSGKSKKRSSLFSPRRNKKEKKSKGEGRPPEKP 660 670 680 690 700 710 90 100 110 120 130 140 FLJ002 SMILGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGS----YFGSLVQDYKVYS : : . . :. .:.... .:. .: :: :.::. :. :.. : KIAA08 SSNLLEE----AAAKPKSLWKSVFSGYKKDKKKK---ADDKSCPSTPSSGATVDSGKHRV 720 730 740 750 760 150 160 170 180 190 200 FLJ002 LEMMARQTSSTEMLQEIRTMMTQLKSY-LLQSTELKALVDPALHSEEELEAIVESALYKC : .. . . ..:. . ..:.: .:... :. .: ..::::.: . . : KIAA08 LPVVRAELQLRRQLS--FSEDSDLSSDDVLEKSSQKSRREPRTYTEEELNAKLTRRVQKA 770 780 790 800 810 820 210 220 230 240 250 260 FLJ002 VLKPLKEAINSCLHQIHSKDGSLQQLKENQLVILATTTTDLGVTTSVPEVPMMEKILQKF . . :. . ::. . . .:::..: : KIAA08 ARRQAKQEELKRLHRAQIIQRQLQQVEERQRRLEERGVAVEKALRGEAGMGKKDDPKLMQ 830 840 850 860 870 880 >>KIAA0039 ( 491 res) ha02030 (491 aa) initn: 84 init1: 50 opt: 109 Z-score: 99.8 bits: 27.7 E(): 2.3 Smith-Waterman score: 109; 27.957% identity (54.839% similar) in 93 aa overlap (3-93:368-459) 10 20 30 FLJ002 TQAMALETPTPGPPREGQSPASQAGTQHPPAQ :. :.:.: :: .::. KIAA00 ETENMRKKRRRIKLPESDSSEDEVFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEPPSV 340 350 360 370 380 390 40 50 60 70 80 90 FLJ002 ATAHSQSSPEFKGSLASLS--DSLGVSVMATDQDSYSTSSTEEELEQFSSPSVKKKPSMI .. .... . : : : . :. : : .: : ...::::.. .: ::.. :.: KIAA00 KSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSEEELNMKTS-SVHRPPAMT 400 410 420 430 440 450 100 110 120 130 140 150 FLJ002 LGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQ . : KIAA00 VKKEPREERKGPKKGTAALGKANRQVSITGFFQRK 460 470 480 490 >>KIAA1818 ( 1157 res) hg00622 (1157 aa) initn: 135 init1: 106 opt: 114 Z-score: 99.1 bits: 28.8 E(): 2.5 Smith-Waterman score: 114; 34.426% identity (59.016% similar) in 61 aa overlap (9-69:568-628) 10 20 30 FLJ002 TQAMALETPTPGPPREGQSPASQAGTQHPPAQATAHSQ : ::: .: : :: :.:: :..: KIAA18 AQPPPPQPQPPPPPQQPPPPLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQPVQAPAKAQ 540 550 560 570 580 590 40 50 60 70 80 90 FLJ002 SSPEFKGSLASLSDSLGVSVMATDQDSYSTSSTEEELEQFSSPSVKKKPSMILGKARHRL . :: : :. .. .:: .:.. . ..: KIAA18 PAITTGGSAAVLAGTIKTSVTGTSMPTGAVSGNVIVNTIAGVPAATFQSINKRLASPVAP 600 610 620 630 640 650 100 110 120 130 140 150 FLJ002 SFASFSSMFHAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQTSSTEMLQ KIAA18 GALTTPGGSAPAQVVHTQPPPRAVGSPATATPDLVSMATTQGVRAVTSVTASAVVTTNLT 660 670 680 690 700 710 >>KIAA0575 ( 952 res) hj00216 (952 aa) initn: 57 init1: 57 opt: 104 Z-score: 92.0 bits: 27.2 E(): 6.3 Smith-Waterman score: 104; 31.579% identity (63.158% similar) in 76 aa overlap (2-71:157-232) 10 20 FLJ002 TQAMALETPTP-GPPREGQSPASQA---GTQ :. ..: : :: .::..:. . ..: KIAA05 SHDSASSSLSSKASGSALGGESSAQPTALPQGEHARSPQPRGPAEEGRAPGEKQRPRASQ 130 140 150 160 170 180 30 40 50 60 70 80 FLJ002 HPPAQATAHSQS-SPEFKGSLASLSDSLGVSVMAT-DQDSYSTSSTEEELEQFSSPSVKK ::. . :: . .:. :: . . :. ::: .. .: : :..:. KIAA05 GPPSAISRHSPGPTPQPDCSLRTGQRSVQVSVTSSCSQLSSSSGSSSSSVAPAAGTWVLQ 190 200 210 220 230 240 90 100 110 120 130 140 FLJ002 KPSMILGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLE KIAA05 ASQCSLTKACRQPPIVFLPKLVYDMVVSTDSSGLPKAASLLPSPSVMWASSFRPLLSKTM 250 260 270 280 290 300 >>KIAA0442 ( 1266 res) hh03913 (1266 aa) initn: 76 init1: 76 opt: 105 Z-score: 91.3 bits: 27.5 E(): 6.9 Smith-Waterman score: 105; 31.818% identity (57.955% similar) in 88 aa overlap (9-88:372-458) 10 20 30 FLJ002 TQAMALETPTPGPPREGQSPASQAGTQHPP-AQATAH- : :::. .:: : .:.:: :. .. KIAA04 TEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQL 350 360 370 380 390 400 40 50 60 70 80 90 FLJ002 -SQSSPEFKG--SLASLSDSLGV---SVMATDQDSYSTSSTEEELEQFSSPSVKKKPSMI :. : .. : :::. :.. : .. .. : : ::: . : . : ....:: KIAA04 LHQNLPPVQAHPSAQSLSQPLSAYNSSSLSLNSLSSSRSSTPAKT-QPAPPHISHHPSAS 410 420 430 440 450 460 100 110 120 130 140 150 FLJ002 LGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQ KIAA04 PFPLSLPNHSPLHSFTPTLQPPAHSHHPNMFAPPTALPPPPPLTSGSLQVAGHPAGSTYS 470 480 490 500 510 520 419 residues in 1 query sequences 2210575 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:46:58 2009 done: Fri Feb 27 10:46:59 2009 Total Scan time: 0.520 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]