# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj08804.fasta.huge -Q ../query/FLJ00250.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00250, 332 aa vs ./tmplib.10216 library 2210662 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.5944+/-0.0044; mu= 19.0958+/- 0.297 mean_var=112.5180+/-24.859, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.120910 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1029 ( 1015 res) fh00363 (1015) 117 30.7 0.47 KIAA1971 ( 830 res) fk08985 ( 830) 103 28.2 2.3 FLJ00155 ( 612 res) sh06465 ( 612) 93 26.2 6.4 KIAA0642 ( 1329 res) hh02837 (1329) 95 27.1 7.7 KIAA1938 ( 1376 res) hg00912s1 (1376) 93 26.7 10 KIAA1140 ( 752 res) hk01004s1 ( 752) 90 25.8 10 KIAA2013 ( 730 res) bm04064 ( 730) 89 25.6 11 KIAA1960 ( 871 res) hk03842 ( 871) 88 25.6 14 KIAA0890 ( 1210 res) hk08057 (1210) 89 26.0 15 KIAA1494 ( 638 res) fj08673 ( 638) 86 25.0 15 KIAA1898 ( 1013 res) fk06427 (1013) 88 25.7 16 KIAA1868 ( 463 res) fj22550 ( 463) 84 24.5 16 KIAA0978 ( 1368 res) fg02182 (1368) 88 25.9 18 KIAA0705 ( 1483 res) hg03359s1 (1483) 88 25.9 19 FLJ00404 ( 261 res) sj07851 ( 261) 80 23.4 19 KIAA0990 ( 883 res) hk05454 ( 883) 85 25.1 21 KIAA0385 ( 1380 res) hh00802 (1380) 87 25.7 21 KIAA0268 ( 1193 res) ha07061 (1193) 86 25.4 22 KIAA1002 ( 962 res) hk09859 ( 962) 85 25.1 22 KIAA1666 ( 1003 res) fg02554 (1003) 85 25.1 22 FLJ00252 ( 819 res) sj09394 ( 819) 84 24.8 22 KIAA0442 ( 1266 res) hh03913 (1266) 86 25.5 22 KIAA0885 ( 826 res) hk07709 ( 826) 84 24.8 22 KIAA0147 ( 1630 res) ha01022s1 (1630) 87 25.8 23 FLJ00378 ( 855 res) sj00210 ( 855) 84 24.9 23 KIAA0926 ( 1447 res) hh02962 (1447) 86 25.5 24 KIAA1765 ( 608 res) fj12188(revised) ( 608) 82 24.3 24 KIAA1205 ( 1217 res) fg03511a (1217) 85 25.3 25 KIAA0375 ( 1540 res) hh00360s1 (1540) 86 25.6 25 KIAA1581 ( 545 res) fj05690 ( 545) 81 24.0 26 KIAA1498 ( 1731 res) hh01611 (1731) 86 25.7 26 KIAA1768 ( 1207 res) ph00672(revised) (1207) 84 25.1 28 FLJ00269 ( 1383 res) sj06049 (1383) 84 25.2 30 KIAA0527 ( 768 res) hg02246 ( 768) 81 24.3 31 FLJ00112 ( 1192 res) as00112 (1192) 83 24.9 31 KIAA0886 ( 1233 res) hk07722 (1233) 83 24.9 32 KIAA1014 ( 1050 res) hk02388s2 (1050) 82 24.6 33 KIAA1917 ( 702 res) fk00028 ( 702) 80 24.0 33 KIAA1684 ( 762 res) fh24594 ( 762) 80 24.1 35 KIAA1883 ( 1480 res) fh02249 (1480) 83 25.0 35 FLJ00392 ( 274 res) sj05126 ( 274) 75 22.6 36 FLJ00167 ( 181 res) sh07420 ( 181) 73 21.9 36 FLJ00122 ( 1736 res) sh00417 (1736) 83 25.1 38 KIAA0182 ( 1157 res) ha02329s1 (1157) 81 24.5 39 KIAA1963 ( 488 res) ph00179 ( 488) 77 23.3 39 FLJ00096 ( 208 res) as00096 ( 208) 73 22.0 39 FLJ00091 ( 170 res) as00091 ( 170) 72 21.7 40 KIAA1020 ( 638 res) fg00473s1 ( 638) 78 23.6 40 KIAA0054 ( 1943 res) ha00503s1 (1943) 83 25.2 40 KIAA1840 ( 2443 res) pf01011 (2443) 84 25.5 41 >>KIAA1029 ( 1015 res) fh00363 (1015 aa) initn: 120 init1: 52 opt: 117 Z-score: 112.3 bits: 30.7 E(): 0.47 Smith-Waterman score: 117; 23.297% identity (44.803% similar) in 279 aa overlap (61-325:715-967) 40 50 60 70 80 90 FLJ002 CWVEGSYFSFICPLPDDHDVLSFLTFSLSEPSPEVPPQPFLEMQQLRLARQLEGLWARLG :. .::.: : : .:. ::.. : KIAA10 VLSPIKEPAKVSPRAASPAKPSSLDLVPNLPKGALPPSPALP----RPSRSSPGLYTSPG 690 700 710 720 730 740 100 110 120 130 140 FLJ002 LGTREDVTPKSDSEAQGEGERLFDLEETLGRHRRILQALR-GLSKQLAQAERQWKKQLGP .... : . : : :. . . . . : :: : ..: . : : : ... : KIAA10 ---QDSLQPTAVSPPYG-GD-ISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRRESLP 750 760 770 780 790 150 160 170 180 190 FLJ002 ------PGQARPDG---GWALDASCQIPSTPGRGGHLSMS--LNKDSAKVGALLHGQWTL :: .:: . ::. . : ::::. .: : . . . . KIAA10 TSPPWTPGASRPPSSLDGWVSPG----PWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSP 800 810 820 830 840 850 200 210 220 230 240 250 FLJ002 LQALQEMRDAAVRMAAEAQVSYLPVGIEHHFLELDHILGLLQEELRGPAKAAAKAPRPPG :. : : . .. .: .. .. .. . : . . .: .: : :: KIAA10 LRPETEARPPSRQL--QALLARNIINAARRKSASPRSAGAENPRPFSPPRAPPPPPPPPP 860 870 880 890 900 260 270 280 290 300 310 FLJ002 QPPRASSCL--QPGIFLFYLLIQTVGFFGYVHFRQELNKSLQECLSTGSLPLGPAPHTPR ::: : .:: . ..: :. : . . : : : .: : :: KIAA10 PPPRMRSPQPARPG----SAAVPGAAFAPIP--RSPLPAGPSSCTS----PRSPLPAPPR 910 920 930 940 950 320 330 FLJ002 ALGILRRQPLPASMPA . . ::.: KIAA10 PF-LYRRSPTDSDVSLDSEDSGAKSPGILGYNICPRGWNGSLRLKRGSLPAEASCTT 960 970 980 990 1000 1010 >>KIAA1971 ( 830 res) fk08985 (830 aa) initn: 84 init1: 59 opt: 103 Z-score: 100.0 bits: 28.2 E(): 2.3 Smith-Waterman score: 103; 21.951% identity (51.707% similar) in 205 aa overlap (71-261:477-675) 50 60 70 80 90 FLJ002 ICPLPDDHDVLSFLTFSLSEPSPEVPPQPFLEMQQLRLARQLEGLWARLG--LGTREDVT ::...:: :: . : .. : . : .. KIAA19 QDEVVYYDPCENPEELKVIDCVVGLQDDKNLEVKELR--RQCQQLESKRGRICAKRASLR 450 460 470 480 490 500 100 110 120 130 140 150 FLJ002 PKSDSEAQGEGERLFDLEETL--GRHRRILQALRGLSKQLAQAERQWKKQLGPPGQAR-- ..:. ... :: . ::.. .:... .: : :. : ...: .: : KIAA19 SRKDQCKENHRFRLQQAEESIRYSRQHHSIQMKRDKIKEEEQKKKEWINQERQKTLQRLR 510 520 530 540 550 560 160 170 180 190 200 FLJ002 --PDGGWAL---DASCQIPSTPGRGGHLSMSLNKDSAKVGALLHGQWTLLQALQEMRDAA : : ..: . : .:. . ::... .... ...: . ... . .:. KIAA19 SFKDKRLAQSVRNTSGSEPVAPNLPSDLSQQMCLPASHAVSVIHPSSRKTRGVP-LSEAG 570 580 590 600 610 620 210 220 230 240 250 260 FLJ002 VRMAAEAQVSY--LPVGIEHHFLEL-DHILGLLQEELRGPAKAAAKAPRPPGQPPRASSC . . : . .:: . :. . :. . .::: : : :: :: KIAA19 NVKSPKCQNCHGNIPVQV---FVPVGDQTHSKSSEELSLPPPPPPPPPPPPPPPPPPPPL 630 640 650 660 670 680 270 280 290 300 310 320 FLJ002 LQPGIFLFYLLIQTVGFFGYVHFRQELNKSLQECLSTGSLPLGPAPHTPRALGILRRQPL KIAA19 RALSSSSQAATHQNLGFRAPVKDDQPRPLVCESPAERPRDSLESFSCPGSMDEVLASLRH 690 700 710 720 730 740 >>FLJ00155 ( 612 res) sh06465 (612 aa) initn: 99 init1: 46 opt: 93 Z-score: 91.9 bits: 26.2 E(): 6.4 Smith-Waterman score: 100; 25.373% identity (49.254% similar) in 201 aa overlap (135-327:205-374) 110 120 130 140 150 160 FLJ002 AQGEGERLFDLEETLGRHRRILQALRGLSKQLAQAERQWKKQLGPPGQARPDGGWALDAS :. ....: ..: : :. : . .. FLJ001 NTVMEKQVRSTQPQQNNEELPTYEEAKAQSQFFRGQQQQQQQQGAVGH----GYYMAGGT 180 190 200 210 220 230 170 180 190 200 210 220 FLJ002 CQIPSTPGRGGHLSMSLNKDSAKVGALLHGQWTLLQALQEMRDAAVRMAAE--AQVSYLP : : :: ..:. .. :: .::.:.... :: .: :.: FLJ001 SQKSRTEGRP-----TVNRANS-------GQAHKDEALKELKQGHVRSLSERIMQLSLER 240 250 260 270 230 240 250 260 270 FLJ002 VGIEHHFLELDHILGLLQEELRGPAKAAAKA--PR--PPGQPPRASSCLQPGIFLFYLLI : ..:. . :. .::. :.:. :: :: : .... ..: FLJ001 NGAKQHLPGSGNGKGFKVGGGPSPAQPAGKVLDPRGPPPEYPFKTKQMMSP-----VSKT 280 290 300 310 320 330 280 290 300 310 320 330 FLJ002 QTVG-FFGYVHFRQELNKSLQECLSTGSLPLGPAPHTPRA-LGILRRQPLPASMPA : : :.: : :.: .. : :::. :. ...:: :: : FLJ001 QEHGLFYGDQH-----PGMLHEMVK----PY-PAPQPVRTDVAVLRYQPPPEYGVTSRPC 340 350 360 370 380 FLJ001 QLPFPSTMQQHSPMSSQTSSASGPLHSVSLPLPLPMALGAPQPPPAASPSQQLGPDAFAI 390 400 410 420 430 440 >>KIAA0642 ( 1329 res) hh02837 (1329 aa) initn: 114 init1: 56 opt: 95 Z-score: 90.4 bits: 27.1 E(): 7.7 Smith-Waterman score: 95; 23.810% identity (50.000% similar) in 210 aa overlap (32-217:587-783) 10 20 30 40 50 FLJ002 RQASDGGPKSPLLPRWDIMAVRVKAERGGCWVEGSYFSF------IC-----PLPDDHDV : ...::.. : :: : . KIAA06 PLMHEAMQKWYYKDPQGEIQGPFNNQEMAEWFQAGYFTMSLLVKRACDESFQPLGDIMKM 560 570 580 590 600 610 60 70 80 90 100 FLJ002 LSFLTFSLSEPSPEVPPQPFLEMQQLRLARQLE--GLWARLGLGTREDVTPKSDSEAQGE . . :: :.: .:: . :..: ::.:: : .:. : .. . .. ... .. KIAA06 WGRVPFS---PGP-APPPHMGELDQERLTRQQELTALYQMQHLQYQQFLIQQQYAQVLAQ 620 630 640 650 660 670 110 120 130 140 150 160 FLJ002 GERLFDLEETLGRHRRILQALRGLSKQLAQAERQWKKQLGPPGQAR----PDGG--WALD .. .:. ... : : : .:. . . . : :. .: :: : : :. KIAA06 QQK-----AALSSQQQ--QQLALLLQQFQTLKMRISDQNIIPSVTRSVSVPDTGSIWELQ 680 690 700 710 720 170 180 190 200 210 FLJ002 ASCQIPSTPGRGGHLSMSLNKDSAKVGALLHGQWTLLQAL-----QEMRDAAVRMAAEAQ . . :.. .:: . .: :.. : :. : .: :: :.: .: : . KIAA06 PTASQPTV-WEGGSV-WDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEE 730 740 750 760 770 780 220 230 240 250 260 270 FLJ002 VSYLPVGIEHHFLELDHILGLLQEELRGPAKAAAKAPRPPGQPPRASSCLQPGIFLFYLL KIAA06 ERKRQEELRRQQEEILRRQQEEERKRREEEELARRKQEEALRRQREQEIALRRQREEEER 790 800 810 820 830 840 >>KIAA1938 ( 1376 res) hg00912s1 (1376 aa) initn: 113 init1: 58 opt: 93 Z-score: 88.4 bits: 26.7 E(): 10 Smith-Waterman score: 93; 30.526% identity (52.632% similar) in 95 aa overlap (172-258:883-976) 150 160 170 180 190 200 FLJ002 QWKKQLGPPGQARPDGGWALDASCQIPSTPGRGGHLSMSLNKDSAKVGALLHGQWTLLQA : ::.:. : .. : :: :::.. . : : KIAA19 YCTSSSDITEPEQKMLSVNKSVSMLDLQGDGPGGRLNSSSVSNLAAVGDLLHSSQASLTA 860 870 880 890 900 910 210 220 230 240 250 FLJ002 LQEMRDA-AVRMAAEAQVSYLPVGIEHHFLELDHILGLLQEELRGPAK-------AAAKA .: : : :.. . : .:.. . . :. ..:: : . :: . KIAA19 ALGLRPAPAGRLSQGSGSSITAAGMRLSQMGVT-TDGVPAQQLRIPLSFQNPLFHMAADG 920 930 940 950 960 970 260 270 280 290 300 310 FLJ002 PRPPGQPPRASSCLQPGIFLFYLLIQTVGFFGYVHFRQELNKSLQECLSTGSLPLGPAPH : ::: KIAA19 PGPPGGHGGGGGHGPPSSHHHHHHHHHHRGGEPPGDTFAPFHGYSKSEDLSSGVPKPPAA 980 990 1000 1010 1020 1030 >>KIAA1140 ( 752 res) hk01004s1 (752 aa) initn: 40 init1: 40 opt: 90 Z-score: 88.2 bits: 25.8 E(): 10 Smith-Waterman score: 90; 24.876% identity (46.766% similar) in 201 aa overlap (44-225:558-747) 20 30 40 50 60 FLJ002 LPRWDIMAVRVKAERGGCWVEGSYFSFICPLPDDHDV-------LSFLTFSLSEPSPEVP ::: ::. :. . : : :. KIAA11 YSFSQLGGLEKDGSFGEGLTMKKQSGMHLTLPDAHDADSGSRRASSIAASRLEEAMSELT 530 540 550 560 570 580 70 80 90 100 110 120 FLJ002 -PQPFLEMQQLRLARQLEGLWARLGLGTREDVTPKSDSEAQGEGERLFDLEETLGRHRRI :. :.. ..: :: .: . . :. : . :. :: ... : KIAA11 MPSSVLKQGPMQLWTTLEQIWLQAAELFMEQQHLKEAGFCIQEAAGLFPTSHSVLYMRGR 590 600 610 620 630 640 130 140 150 160 170 180 FLJ002 LQALRGLSKQLAQAERQWKKQLGPPGQARPDGGWALDASCQIPSTPGRGGHLSMSLN--K : ..: .: .:.. .:. : . ::: . . . : : :: :.. . . KIAA11 LAEVKG---NLEEAKQLYKEAL----TVNPDGVRIMHSLGLMLS---RLGHKSLAQKVLR 650 660 670 680 690 190 200 210 220 230 FLJ002 DSAKVGALLHGQWT----LLQALQEMRDAAVR-----MAAEAQVSYLPVGIEHHFLELDH :... . : : .::: : . .::: . ::. :: .: KIAA11 DAVERQSTCHEAWQGLGEVLQA-QGQNEAAVDCFLTALELEASSPVLPFSIIPREL 700 710 720 730 740 750 240 250 260 270 280 290 FLJ002 ILGLLQEELRGPAKAAAKAPRPPGQPPRASSCLQPGIFLFYLLIQTVGFFGYVHFRQELN >>KIAA2013 ( 730 res) bm04064 (730 aa) initn: 70 init1: 46 opt: 89 Z-score: 87.3 bits: 25.6 E(): 11 Smith-Waterman score: 89; 30.263% identity (52.632% similar) in 76 aa overlap (123-196:10-81) 100 110 120 130 140 150 FLJ002 TREDVTPKSDSEAQGEGERLFDLEETLGRHRRILQALRGLSKQLAQAERQWKKQLGPPGQ :: :. : : ..: .. : . :: .. KIAA20 SFDGWRPPRRRRKQGWR-LLRRLRRGP-GWAPRSGPGSE 10 20 30 160 170 180 190 200 210 FLJ002 ARPDG--GWALDASCQIPSTPGRGGHLSMSLNKDSAKVGALLHGQWTLLQALQEMRDAAV :: : ::: . . :. :: : :.. . .:: ..: KIAA20 ARAAGPVGWAAGPAAALAPLPAPGG--PMWLQQRLKGLPGLLSSSWARRLLCLLGLLLLL 40 50 60 70 80 90 220 230 240 250 260 270 FLJ002 RMAAEAQVSYLPVGIEHHFLELDHILGLLQEELRGPAKAAAKAPRPPGQPPRASSCLQPG KIAA20 LWFGGSGARRAAGGLHLLPWSRGEPGAAEPSACLEAATRAWRGLRERGEVVPLGPGVPAL 100 110 120 130 140 150 >>KIAA1960 ( 871 res) hk03842 (871 aa) initn: 91 init1: 62 opt: 88 Z-score: 85.6 bits: 25.6 E(): 14 Smith-Waterman score: 88; 29.545% identity (51.515% similar) in 132 aa overlap (148-270:87-212) 120 130 140 150 160 170 FLJ002 TLGRHRRILQALRGLSKQLAQAERQWKKQLGPPGQARPDGGWALDASCQI-PSTPGRGGH : :: : ::. :: .: . :.. .:.: KIAA19 AASGGPEPRTQSPGTDLLPYLDWDYVRVVWGGPGPAPPDA--ALCTSPRPRPAVAARSGP 60 70 80 90 100 110 180 190 200 210 220 230 FLJ002 LSMSLNKDSAKVGALLHGQWTLLQALQEMRDAAVRMAAEAQVSYLPVGIEHHFLE--LDH . . : : . :: :: .::.. ::: . .. :. . KIAA19 QPTEV---PGTPGPLNRQATPLLYALAAEAEAAAQ-AAEPPSPPASRAAYRQRLQGAQRR 120 130 140 150 160 170 240 250 260 270 280 FLJ002 IL---GLLQEELRG--PAKAAAKAP-RPPGQPPRASSCLQPGIFLFYLLIQTVGFFGYVH .: .. ..::: ::. .: :::. ::..: .:: KIAA19 VLRETSFQRKELRMSLPARLRPTVPARPPATHPRSASLSHPGGEGEPARSRAPAPGTAGR 180 190 200 210 220 230 290 300 310 320 330 FLJ002 FRQELNKSLQECLSTGSLPLGPAPHTPRALGILRRQPLPASMPA KIAA19 GPLANQQRKWCFSEPGKLDRVGRGGGPARECLGEACSSSGLPGPEPLEFQHPALAKFEDH 240 250 260 270 280 290 >>KIAA0890 ( 1210 res) hk08057 (1210 aa) initn: 123 init1: 85 opt: 89 Z-score: 85.2 bits: 26.0 E(): 15 Smith-Waterman score: 89; 36.667% identity (61.667% similar) in 60 aa overlap (33-90:383-441) 10 20 30 40 50 60 FLJ002 QASDGGPKSPLLPRWDIMAVRVKAERGGCWVEGSYFSFICPLPDDHDVLSFLTFS--LSE ::.:... : .: :.: . : ::. KIAA08 ELGETQRRPCTIQVPEPILRKIETFLNHYPVESSWIAPELRLQSD-DILPLGKDSGPLSD 360 370 380 390 400 410 70 80 90 100 110 120 FLJ002 PSPEVPPQPFLEMQQLRLARQLEGLWARLGLGTREDVTPKSDSEAQGEGERLFDLEETLG : : :.:: ...::...: :: : : KIAA08 PITGKPYVPLLEAEEVRLSQSLLELWRRRGPVWQEAPQLPVDPHRDTILNAIEQHPVVVI 420 430 440 450 460 470 >>KIAA1494 ( 638 res) fj08673 (638 aa) initn: 56 init1: 56 opt: 86 Z-score: 85.1 bits: 25.0 E(): 15 Smith-Waterman score: 86; 27.434% identity (52.212% similar) in 113 aa overlap (148-258:287-389) 120 130 140 150 160 170 FLJ002 TLGRHRRILQALRGLSKQLAQAERQWKKQLGPPGQARPDGGWALDASCQIPSTPGRGGHL : :.: .: : . : .:.. ..:. KIAA14 AVTNASQAKVPMSTAGQTSRGVTMVSPSTAGGPAQKLQGNGVAGSPSV-VPAAVVSAAHI 260 270 280 290 300 310 180 190 200 210 220 230 FLJ002 SMSLNKDSAKVGALLH--GQWTLLQALQEMRDAAVRMAAEAQVSYLPVGIEHHFLELDHI . : .::: ::: :: :. :: . .: .:.. . .. :. ... KIAA14 QTS---PQAKV--LLHMTGQMTVNQARNAVRTVAAHNQERPTAAVTPIQVQNAAGLSPAS 320 330 340 350 360 370 240 250 260 270 280 290 FLJ002 LGLLQEELRGPAKAAAKAPRPPGQPPRASSCLQPGIFLFYLLIQTVGFFGYVHFRQELNK .:: .. : .: :: :: KIAA14 VGLSHHSLASPQ----PAPLMPGSATHTAAISISRASAPLACAAAAPLTSPSITSASLEA 380 390 400 410 420 332 residues in 1 query sequences 2210662 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:46:59 2009 done: Fri Feb 27 10:47:00 2009 Total Scan time: 0.480 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]