# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj08819.fasta.huge -Q ../query/FLJ00409.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00409, 210 aa vs ./tmplib.10216 library 2210784 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.1971+/-0.00405; mu= 16.9615+/- 0.275 mean_var=96.1297+/-21.013, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.130811 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1755 ( 1110 res) fg04230(revised) (1110) 93 27.5 3.1 KIAA1782 ( 545 res) aj00273 ( 545) 86 25.7 5.2 KIAA0314 ( 1899 res) af02425 (1899) 91 27.4 5.4 KIAA0351 ( 590 res) hg01609 ( 590) 86 25.7 5.5 FLJ00233 ( 535 res) sj06856 ( 535) 85 25.5 5.9 KIAA1812 ( 803 res) hh13045 ( 803) 85 25.7 7.4 FLJ00386 ( 811 res) sj04204 ( 811) 85 25.7 7.4 KIAA0207 ( 605 res) ha02795 ( 605) 83 25.2 8.2 KIAA1447 ( 1721 res) fh04686 (1721) 87 26.6 8.7 FLJ00151 ( 302 res) sh05780 ( 302) 79 24.0 9.5 KIAA1814 ( 1285 res) ph00952 (1285) 85 26.0 9.6 KIAA1667 ( 505 res) fg05049 ( 505) 81 24.7 9.7 KIAA1149 ( 532 res) fg04087 ( 532) 81 24.7 10 KIAA0307 ( 716 res) hg00066 ( 716) 82 25.1 10 KIAA1332 ( 651 res) fh15405 ( 651) 81 24.8 11 FLJ00001 ( 155 res) as00001 ( 155) 74 22.6 13 KIAA0746 ( 1029 res) hk04140 (1029) 81 25.1 14 KIAA0284 ( 1573 res) pf09542 (1573) 82 25.6 16 KIAA0937 ( 653 res) hh04715 ( 653) 78 24.3 17 KIAA0827 ( 1608 res) hh03726 (1608) 81 25.4 18 KIAA0211 ( 1317 res) ha02768 (1317) 80 25.1 19 FLJ00066 ( 162 res) as00066 ( 162) 71 22.1 19 KIAA1059 ( 1297 res) hh12158 (1297) 79 24.9 21 KIAA1778 ( 341 res) pg00707 ( 341) 73 22.9 22 KIAA0182 ( 1157 res) ha02329s1 (1157) 78 24.7 23 KIAA2038 ( 917 res) pj01991 ( 917) 77 24.3 23 KIAA0706 ( 1123 res) pj01355 (1123) 77 24.4 25 KIAA1549 ( 1865 res) fh16155s1 (1865) 79 25.2 26 KIAA0420 ( 756 res) fg02987 ( 756) 75 23.8 26 KIAA1532 ( 601 res) fg04455(revised) ( 601) 74 23.5 26 KIAA0467 ( 2687 res) ff08895 (2687) 80 25.6 27 KIAA1802 ( 821 res) fj21631 ( 821) 75 23.9 28 KIAA1836 ( 718 res) fh12206(revised) ( 718) 74 23.6 29 KIAA1506 ( 3309 res) ff04330 (3309) 80 25.7 31 KIAA1029 ( 1015 res) fh00363 (1015) 75 24.0 31 KIAA0929 ( 1663 res) hh03374 (1663) 77 24.7 31 FLJ00190 ( 521 res) sj02368 ( 521) 72 23.0 32 KIAA1073 ( 675 res) hj06550 ( 675) 73 23.4 32 FLJ00134 ( 341 res) sh02437 ( 341) 70 22.4 33 FLJ00104 ( 287 res) as00104 ( 287) 69 22.0 34 KIAA1030 ( 763 res) fh00432 ( 763) 73 23.4 34 FLJ00189 ( 491 res) sj02334 ( 491) 71 22.8 35 KIAA1023 ( 666 res) fh15455 ( 666) 72 23.2 36 KIAA0601 ( 886 res) hg00838a ( 886) 73 23.5 37 FLJ00375 ( 708 res) sh07824 ( 708) 72 23.2 38 KIAA0272 ( 759 res) ha06802s1 ( 759) 72 23.2 39 KIAA0236 ( 1696 res) ha04654 (1696) 75 24.3 41 KIAA1885 ( 1098 res) fj04812 (1098) 73 23.7 42 KIAA0542 ( 1212 res) hg04325s1 (1212) 73 23.7 44 KIAA0346 ( 1682 res) hg01508s1 (1682) 74 24.1 46 >>KIAA1755 ( 1110 res) fg04230(revised) (1110 aa) initn: 119 init1: 69 opt: 93 Z-score: 97.5 bits: 27.5 E(): 3.1 Smith-Waterman score: 93; 23.448% identity (48.276% similar) in 145 aa overlap (22-158:14-150) 10 20 30 40 50 60 FLJ004 CVHITMGFSLSPTWKPEPCLVDLGSGITPYDSEGLILSEREAGQPGCGGNGVPLLMPVAV :. . : . ... . . . : . :. :. KIAA17 HLAPLNPLLLRQGDFYLQVEPQEEQSVCIMIKCLSLDLCTVDKKPVPEPAYP 10 20 30 40 50 70 80 90 100 110 FLJ004 FVHLHVTLAEMNATW--NPTHRSRLPHAREKTALPVLAWLCVGL--YLLTGPQLARALEQ .. . : .:. . :: : . : :. :: : . .. ::.. :: : KIAA17 ILFTQEWLEAINSDFEGNPLHNCLV--ASENGIAPV-PWTKITSPEFVDDRPQVVNALCQ 60 70 80 90 100 120 130 140 150 160 170 FLJ004 LWGPRPGQESQLRTRRTEEDGVGKSSSLPYPRPLPAST----EGRTAIVPPYLEALICTK ::: : . .: . . . ..:: : . :::.. .::: KIAA17 AWGPLPLEALDLSSPQE----LHQASS-PDNQVLPAQSLAKGKGRTYGSKYPGLIKVEQA 110 120 130 140 150 160 180 190 200 210 FLJ004 LARAEFSANKDSARRHFRKVADRWLEAGLGESTAEKHF KIAA17 RCGEVAFRMDEVVSQDFEGDYVALLGFSQESRGESPSREAGTSSGCTSGALEEIAGTKET 170 180 190 200 210 220 >>KIAA1782 ( 545 res) aj00273 (545 aa) initn: 74 init1: 45 opt: 86 Z-score: 93.4 bits: 25.7 E(): 5.2 Smith-Waterman score: 86; 28.488% identity (48.837% similar) in 172 aa overlap (6-164:297-454) 10 20 30 FLJ004 CVHITMGFSLSPTWKPEPCLVDLGSGITPYDSEGL : :::: : :..:: : : KIAA17 SERPTFIDRLANSLTKRKRSTPQKFVGEKQMRFSLSDL--P----YDVNSGGYEKDVE-- 270 280 290 300 310 40 50 60 70 80 FLJ004 ILSEREAGQPGCGGN----GV----PL-LMPVAVFVHLHVTLAEMNATWNPTH-RSRLPH : ... .:: :.. :. :: : :. . .: ... . . .: : .:: KIAA17 -LVAHHSLEPGFGSSLAFVGAEHLRPLRLPPTNCISELTPVISSVYTQMQPLPGRLELPG 320 330 340 350 360 370 90 100 110 120 130 140 FLJ004 AREKTALPVLAWLCVGLYLLTGPQLARALEQLWGPRPGQESQLRTRRTEEDGVGKSSSLP .:: : : : :: :. . . .: : ... :. ..:: :. ::: KIAA17 SREAGEGP--EDLADGGPLLYRPR-GPLTDPGASPSNGCQDSTDTESNHEDRVAGVVSLP 380 390 400 410 420 430 150 160 170 180 190 200 FLJ004 Y---PRPLPASTEGRTAIVPPYLEALICTKLARAEFSANKDSARRHFRKVADRWLEAGLG :.: :. . :: . : : KIAA17 QGPPPQPPPTIVVGRHS--PAYAKEDPKPQEGLLRGTPGPSKEVLRVVGESGEPVKAFKC 440 450 460 470 480 490 >>KIAA0314 ( 1899 res) af02425 (1899 aa) initn: 70 init1: 46 opt: 91 Z-score: 93.2 bits: 27.4 E(): 5.4 Smith-Waterman score: 91; 28.750% identity (47.500% similar) in 80 aa overlap (90-162:1421-1500) 60 70 80 90 100 110 FLJ004 VFVHLHVTLAEMNATWNPTHRSRLPHAREKTALPVLAWLCVGLYLLTGPQLARALEQLWG :: :: .: : . . :.. :. . KIAA03 SPTGLGQPKRRGRPPSKFFKQMEQRYLTQLTAQPVPPEMCSGWWWIRDPEMLDAMLKALH 1400 1410 1420 1430 1440 1450 120 130 140 150 160 170 FLJ004 PRPGQESQL-----RTRRTEEDGVGKSSSLPY--PRPLPASTEGRTAIVPPYLEALICTK :: .:. : . : .. . :. : :: ::: :: . : KIAA03 PRGIREKALHKHLNKHRDFLQEVCLRPSADPIFEPRQLPAFQEGIMSWSPKEKTYETDLA 1460 1470 1480 1490 1500 1510 180 190 200 210 FLJ004 LARAEFSANKDSARRHFRKVADRWLEAGLGESTAEKHF KIAA03 VLQWVEELEQRVIMSDLQIRGWTCPSPDSTREDLAYCEHLSDSQEDITWRGRGREGLAPQ 1520 1530 1540 1550 1560 1570 >>KIAA0351 ( 590 res) hg01609 (590 aa) initn: 54 init1: 54 opt: 86 Z-score: 93.1 bits: 25.7 E(): 5.5 Smith-Waterman score: 86; 34.783% identity (63.043% similar) in 46 aa overlap (106-151:324-368) 80 90 100 110 120 130 FLJ004 NPTHRSRLPHAREKTALPVLAWLCVGLYLLTGPQLARALEQLWGPRPGQESQLRTRRTEE ..:.:. . :.: :: :. : .:: KIAA03 YLKSVRYIEELQKFVEDDNYKLSLRIEPGSSSPRLVSSKEDLAGPSAGSGSARFSRRPTC 300 310 320 330 340 350 140 150 160 170 180 190 FLJ004 DGVGKSSSLPYPRPLPASTEGRTAIVPPYLEALICTKLARAEFSANKDSARRHFRKVADR .. ..::: : :.: KIAA03 PDTSVAGSLPTP-PVPRHRKSHSLGNNMMCQLSVVESKSATFPSEKARHLLDDSVLESRS 360 370 380 390 400 410 >>FLJ00233 ( 535 res) sj06856 (535 aa) initn: 51 init1: 51 opt: 85 Z-score: 92.5 bits: 25.5 E(): 5.9 Smith-Waterman score: 85; 31.250% identity (48.750% similar) in 80 aa overlap (12-88:259-334) 10 20 30 40 FLJ004 CVHITMGFSLSPTWKPEPCLVDLGSGITPYDSEGLILSERE :::: : ..: .:: ::. .. FLJ002 VRAVDGGVGHNQKTGIATVNITLLDINDNHPTWKDAPYYINLVE-MTPPDSD---VTTVV 230 240 250 260 270 280 50 60 70 80 90 FLJ004 AGQPGCGGNG--VPLLMPVAVFVHLHVTLAEMNATWNPTHRSRL-PHAREKTALPVLAWL : .: : :: : ..: : :. : ... .: : :: : FLJ002 AVDPDLGENGTLVYSIQPPNKFYSLNSTTGKIRTTHAMLDRENPDPHEAELMRKIVVSVT 290 300 310 320 330 340 100 110 120 130 140 150 FLJ004 CVGLYLLTGPQLARALEQLWGPRPGQESQLRTRRTEEDGVGKSSSLPYPRPLPASTEGRT FLJ002 DCGRPPLKATSSATVFVNLLDLNDNDPTFQNLPFVAEVLEGIPAGVSIYQVVAIDLDEGL 350 360 370 380 390 400 >>KIAA1812 ( 803 res) hh13045 (803 aa) initn: 51 init1: 51 opt: 85 Z-score: 90.8 bits: 25.7 E(): 7.4 Smith-Waterman score: 85; 31.250% identity (48.750% similar) in 80 aa overlap (12-88:367-442) 10 20 30 40 FLJ004 CVHITMGFSLSPTWKPEPCLVDLGSGITPYDSEGLILSERE :::: : ..: .:: ::. .. KIAA18 VRAVDGGVGHNQKTGIATVNITLLDINDNHPTWKDAPYYINLVE-MTPPDSD---VTTVV 340 350 360 370 380 390 50 60 70 80 90 FLJ004 AGQPGCGGNG--VPLLMPVAVFVHLHVTLAEMNATWNPTHRSRL-PHAREKTALPVLAWL : .: : :: : ..: : :. : ... .: : :: : KIAA18 AVDPDLGENGTLVYSIQPPNKFYSLNSTTGKIRTTHAMLDRENPDPHEAELMRKIVVSVT 400 410 420 430 440 450 100 110 120 130 140 150 FLJ004 CVGLYLLTGPQLARALEQLWGPRPGQESQLRTRRTEEDGVGKSSSLPYPRPLPASTEGRT KIAA18 DCGRPPLKATSSATVFVNLLDLNDNDPTFQNLPFVAEVLEGIPAGVSIYQVVAIDLDEGL 460 470 480 490 500 510 >>FLJ00386 ( 811 res) sj04204 (811 aa) initn: 110 init1: 50 opt: 85 Z-score: 90.7 bits: 25.7 E(): 7.4 Smith-Waterman score: 85; 32.000% identity (53.333% similar) in 75 aa overlap (82-154:442-514) 60 70 80 90 100 110 FLJ004 VPLLMPVAVFVHLHVTLAEMNATWNPTHRSRLPHAR-EKTALPVLAWLCVGLYLLTGPQL : : :. ...::.:. : . : :: FLJ003 ALAQGGMHIRARFPPTTAVSAIPSSSIPLGRQPMAQVSQSSLPMLSSPSPGQQVQT-PQS 420 430 440 450 460 470 120 130 140 150 160 FLJ004 ARALEQLWGPRPGQES-QLRTRRTEEDGVGKSSSLPYPRPLPASTEGRTAIVPPYLEALI : .:.::: : : . . . . :: :: : : :... FLJ003 MPPPPQP-SPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSP 480 490 500 510 520 170 180 190 200 210 FLJ004 CTKLARAEFSANKDSARRHFRKVADRWLEAGLGESTAEKHF FLJ003 GPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKM 530 540 550 560 570 580 >>KIAA0207 ( 605 res) ha02795 (605 aa) initn: 44 init1: 44 opt: 83 Z-score: 89.9 bits: 25.2 E(): 8.2 Smith-Waterman score: 83; 36.364% identity (54.545% similar) in 66 aa overlap (106-163:104-167) 80 90 100 110 120 130 FLJ004 NPTHRSRLPHAREKTALPVLAWLCVGLYLLTGPQLARALEQLWGPRPG-QESQ----LRT .:: :... .:: :.:: : . KIAA02 LESLYSACSMQSDTVPLLQNGQHARSQPRASGP--PRSIQPQVSPRQRVQRSQPVHILAV 80 90 100 110 120 130 140 150 160 170 180 FLJ004 RRT-EEDGVGKSSSLP-YPRPLPA-STEGRTAIVPPYLEALICTKLARAEFSANKDSARR :: ::: ..:::: : :.: : :.. : KIAA02 RRLQEEDQQFRTSSLPAIPNPFPELCGPGSPAVLTPGSLPPSQAAAKQDVKVFSEDGTSK 140 150 160 170 180 190 190 200 210 FLJ004 HFRKVADRWLEAGLGESTAEKHF KIAA02 VVEILADMTARDLCQLLVYKSHCVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASE 200 210 220 230 240 250 >>KIAA1447 ( 1721 res) fh04686 (1721 aa) initn: 55 init1: 55 opt: 87 Z-score: 89.5 bits: 26.6 E(): 8.7 Smith-Waterman score: 100; 25.000% identity (48.529% similar) in 204 aa overlap (20-208:626-812) 10 20 30 40 FLJ004 CVHITMGFSLSPTWKPEPCLVDLGSGITPYDSEGLILSEREAGQPGCGG :. :... . .. :: : : : . KIAA14 ELADLAIQRQRSERTVPEEEEDVLAFNLQHLATLATAWSLVEAAGLDSSTAPAQPPTANP 600 610 620 630 640 650 50 60 70 80 90 100 FLJ004 NGVPLLMPVAVFVHLHVTLAEMNATWNPTHRSRLPHAREKTALPVLAWLCVGLYLLTGP- . : : : .. . . . ::.: . : :.:. : ::. . . KIAA14 CSGPRLTP-------RMQILQRKDTWTPKTKPVCPL---KAAIDRLDTQEVGMRVRLAEL 660 670 680 690 700 110 120 130 140 150 FLJ004 -----QLARALEQLWGPRPGQESQLRTRRTEEDGVGK------SSSLPYPRP---LPAST . : : .: . .: . .: . : :. ::::: ::: :: : KIAA14 QRRYKEKQRELARLQR-KHDHERDESSRSPARRGPGRPRKRKHSSSLPAPRPTGPLPRSD 710 720 730 740 750 760 160 170 180 190 200 210 FLJ004 EGRTAIVPPYLEALICTKLARAEFSANKDSARRHFRKVADRWLEAGLGESTAEKHF .. : : .:.:..: :. ... . :.. :. .: . ::: ...:: KIAA14 GKKVKAVRTSL-GLLCAEL-RG--GSGGEPAKK--RSKLERSVYAGLQTASVEKAQCKKS 770 780 790 800 810 KIAA14 SCQGGLAPSVAHRVAQLKPKVKSKGLPTGLSSFQQKEATPGGRIREKLSRAKSAKVSGAT 820 830 840 850 860 870 >>FLJ00151 ( 302 res) sh05780 (302 aa) initn: 89 init1: 56 opt: 79 Z-score: 88.8 bits: 24.0 E(): 9.5 Smith-Waterman score: 79; 30.526% identity (54.737% similar) in 95 aa overlap (84-176:204-292) 60 70 80 90 100 110 FLJ004 LLMPVAVFVHLHVTLAEMNATWNPTHRSRLPHAREKTALPVLAWL-CVGLYLLTGPQLAR : ::. ..: . :: . . ..: .: FLJ001 TKALAQYPLKQYRESQAFSFCTAGRWAAGEPVARDGAGLQA-AWRRQIRQFSRVSPAVAD 180 190 200 210 220 230 120 130 140 150 160 170 FLJ004 ALEQLW-GPRPGQESQLRTRRTEEDGVGKSSSLPYPRPLPASTEGRTAIVPPYLEALICT :. . .:: :.. :.. ::.. .: ..:: .: : :: : : : :: FLJ001 AVVTAFPSPRLLQQA-LEACSTERERMGLLADLP----VPPSEGGRPRRVGPDLSRRICL 240 250 260 270 280 180 190 200 210 FLJ004 KLARAEFSANKDSARRHFRKVADRWLEAGLGESTAEKHF :. : FLJ001 FLTTANPDLLLDLGS 290 300 210 residues in 1 query sequences 2210784 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:56 2009 done: Fri Feb 27 11:02:56 2009 Total Scan time: 0.380 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]