# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj09371.fasta.huge -Q ../query/FLJ00418.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00418, 200 aa vs ./tmplib.10216 library 2210794 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.3107+/-0.00555; mu= 15.0481+/- 0.375 mean_var=190.6116+/-42.855, 0's: 0 Z-trim: 1 B-trim: 140 in 1/39 Lambda= 0.092897 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0613 ( 734 res) hg01088b ( 734) 140 30.0 0.33 KIAA1547 ( 863 res) fh14154 ( 863) 126 28.3 1.3 KIAA2038 ( 917 res) pj01991 ( 917) 119 27.4 2.6 FLJ00361 ( 366 res) sh04352 ( 366) 114 26.1 2.6 KIAA1870 ( 832 res) hh05136b ( 832) 114 26.7 3.9 KIAA1311 ( 889 res) fh11512 ( 889) 112 26.4 4.8 KIAA1139 ( 1124 res) hk00330 (1124) 113 26.7 4.9 KIAA0407 ( 2143 res) hg01339 (2143) 116 27.6 5.1 FLJ00201 ( 705 res) sj04110 ( 705) 110 26.0 5.2 KIAA0596 ( 1531 res) hg01605 (1531) 114 27.1 5.2 KIAA0522 ( 1555 res) hg01393 (1555) 112 26.8 6.4 KIAA0927 ( 1001 res) hg03734 (1001) 109 26.1 6.8 KIAA1355 ( 1189 res) fj01564 (1189) 109 26.2 7.4 KIAA0574 ( 405 res) hj00204 ( 405) 103 24.7 7.5 KIAA1983 ( 418 res) fk09737(revised) ( 418) 103 24.7 7.7 FLJ00169 ( 432 res) sh07709 ( 432) 103 24.7 7.8 FLJ00330 ( 246 res) sj03258 ( 246) 100 23.9 7.8 KIAA1608 ( 872 res) fj20142 ( 872) 106 25.6 8.3 FLJ00224 ( 896 res) sj06244 ( 896) 106 25.6 8.4 FLJ00395 ( 1105 res) sj06062 (1105) 107 25.9 8.5 KIAA0653 ( 558 res) hk01718 ( 558) 103 24.9 8.8 KIAA0909 ( 1234 res) hk10471 (1234) 107 26.0 9 KIAA0339 ( 1709 res) hg01304(revised) (1709) 106 26.1 12 KIAA1535 ( 711 res) fk12792 ( 711) 101 24.8 12 KIAA1441 ( 1258 res) hg02860b (1258) 104 25.6 12 KIAA0616 ( 634 res) hg03623 ( 634) 100 24.6 12 KIAA1780 ( 1192 res) pf01012 (1192) 103 25.4 13 KIAA1423 ( 616 res) fh08369(revised) ( 616) 99 24.4 13 FLJ00260 ( 922 res) sh05833 ( 922) 101 25.0 14 FLJ00274 ( 1386 res) sh00469 (1386) 103 25.6 14 KIAA0346 ( 1682 res) hg01508s1 (1682) 104 25.8 14 KIAA0455 ( 814 res) fh02485 ( 814) 100 24.8 14 KIAA0176 ( 265 res) ha03941 ( 265) 94 23.1 14 KIAA0457 ( 845 res) hg00693 ( 845) 100 24.8 14 KIAA0665 ( 760 res) hk02064 ( 760) 98 24.4 16 KIAA1887 ( 967 res) fk02232 ( 967) 99 24.8 17 KIAA1910 ( 760 res) fh21867 ( 760) 96 24.2 20 KIAA1249 ( 949 res) hh04184 ( 949) 97 24.5 20 KIAA1065 ( 665 res) hj05094 ( 665) 94 23.8 22 KIAA1645 ( 386 res) fg04139 ( 386) 91 23.0 22 KIAA1172 ( 929 res) hj03919(revised) ( 929) 95 24.2 24 KIAA1813 ( 673 res) ph00819b ( 673) 93 23.7 25 KIAA0765 ( 952 res) hk04803s1 ( 952) 94 24.1 26 KIAA0818 ( 375 res) hj00220 ( 375) 88 22.6 29 FLJ00159 ( 567 res) sh06608 ( 567) 90 23.2 30 KIAA1522 ( 1044 res) fh14706(revised) (1044) 93 24.0 30 KIAA1818 ( 1157 res) hg00622 (1157) 93 24.1 32 FLJ00160 ( 1696 res) sh06621 (1696) 95 24.6 32 FLJ00004 ( 698 res) as00004 ( 698) 90 23.3 33 FLJ00153 ( 497 res) sh06127 ( 497) 88 22.8 33 >>KIAA0613 ( 734 res) hg01088b (734 aa) initn: 100 init1: 87 opt: 140 Z-score: 115.1 bits: 30.0 E(): 0.33 Smith-Waterman score: 144; 36.697% identity (53.211% similar) in 109 aa overlap (5-98:478-579) 10 20 30 FLJ004 SLAPPIPSAQIPGSPARWLEPALRPLAGPPGTD- : ::. :.:: ::: :: : :: KIAA06 PAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPA---EPASRP---PWVTDD 450 460 470 480 490 500 40 50 60 70 80 FLJ004 -LGVKGGPGQPTLAAMVAGDIRGRGASSPLGPRVPPLAGPGSVSRR----SSTRSFL--R .. : .::. : . :: : .: ::.::::: :.:.: .:.:. : . KIAA06 SFSQKFAPGKSTTSISKQTLPRGGPAYTPAGPQVPPLAR-GTVQRAERFPASSRTPLCGH 510 520 530 540 550 560 90 100 110 120 130 FLJ004 CR-------VAPEGCSWEPTLDQSCREGVAGQGDHWPYHLWPGGPSLWLRLRVSRAIRGS : .. : ::.: KIAA06 CNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPLCAKC 570 580 590 600 610 620 >>KIAA1547 ( 863 res) fh14154 (863 aa) initn: 111 init1: 89 opt: 126 Z-score: 104.4 bits: 28.3 E(): 1.3 Smith-Waterman score: 130; 34.921% identity (51.587% similar) in 126 aa overlap (4-126:14-121) 10 20 30 40 50 FLJ004 SLAPPIPSAQIPGSPARWLEPALRPLAGPPGTDLGVKGGPGQPTLAAMVA :: : :. :: .: : . ::. : :. :.:::. KIAA15 RARRSPGKAAGRCPPSPRRTKPAPAARPRRP---PTTLPPAPRLFVSTWGGRPTLGFRCE 10 20 30 40 50 60 70 80 90 100 FLJ004 GDIRGRGASSPLGPRVPPLAGPGS-VSRRSSTRSFLRCRVAPEGCSWEPTLDQSCRE--G ... : :::: . : ::: : :: . : : .:.. : : ::..: : . KIAA15 NELGGPGASSRF-PGRPPL-GLGSPLPRTSPARAL--------GAS---TLSES-RPLPA 60 70 80 90 100 110 120 130 140 150 160 FLJ004 VAGQGDHWPYHLWPGGPSLWLRLRVSRAIRGSLVRNHSQGQSMECDCGPSVPPGPGVRCG . :: : : :: :.. KIAA15 MYPQGRH-PAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQR 110 120 130 140 150 160 >>KIAA2038 ( 917 res) pj01991 (917 aa) initn: 138 init1: 73 opt: 119 Z-score: 99.1 bits: 27.4 E(): 2.6 Smith-Waterman score: 119; 37.500% identity (61.111% similar) in 72 aa overlap (1-72:719-782) 10 20 30 FLJ004 SLAPPIPSAQIPGSPARWLEPALRPLAGPP : ::: : .: ..: ::.:.:. : KIAA20 LSSGPRTTSGPVATSGPAYSPGPASPGQAYSAAPPSSCAPSSSSSSEWQEPVLEPF-DP- 690 700 710 720 730 740 40 50 60 70 80 90 FLJ004 GTDLGVKGGPGQPTLAAMVAGDIRGRGASSPLGPRVPPLAGPGSVSRRSSTRSFLRCRVA .:: .:. .: : . . . :. :. .: :::. :: :: KIAA20 -FELG-QGSSPEPEL--LRSQEPRAVGTPGP-GPRLSPL-GPSKAFEPEGLVLHQVPTPL 750 760 770 780 790 800 100 110 120 130 140 150 FLJ004 PEGCSWEPTLDQSCREGVAGQGDHWPYHLWPGGPSLWLRLRVSRAIRGSLVRNHSQGQSM KIAA20 SPAALQGPEAGGALFLTQGRLEGPPASPRDGATGFGVRDASSWQPPADLSALSLEEVSRS 810 820 830 840 850 860 >>FLJ00361 ( 366 res) sh04352 (366 aa) initn: 58 init1: 58 opt: 114 Z-score: 99.0 bits: 26.1 E(): 2.6 Smith-Waterman score: 117; 26.108% identity (47.783% similar) in 203 aa overlap (4-196:27-215) 10 20 30 FLJ004 SLAPPIPSAQIPGSPARWLEPALRPLAGPPGTDLGVK :: : ... :: : :: . : . . .. FLJ003 SLVKGTWERHSSAYPGMSVLSAPAPRPPAPPGHF--SPPRPRAQILRRFQGAESEESAAA 10 20 30 40 50 40 50 60 70 80 90 FLJ004 GGPGQPTLAAMVAG--DIRGRGASSPLGPRVPPLAGPGSVSRRSSTRSFLRCRVAPEGCS ::. .: . .:: . . :...: ::. : . . :. . . . .: : : . FLJ003 WGPAWRNLHGEAAGRHSPDAPGTTAPPRPRASRRALSAPAPFRQEMHLWHQVQVLPPGEA 60 70 80 90 100 110 100 110 120 130 140 150 FLJ004 WEPTLDQSCREGVAGQGDHWPYHLWPGGPSLWLRLRVSRAIR--GSLVRNHSQGQSMEC- : ..: : . : . ::. : : . : . : . :. . . : FLJ003 -APR--------ATGGGRRAPRQ--DRGPA-WRGRRGAAATESPGRFRRSPGGPPGTICA 120 130 140 150 160 160 170 180 190 200 FLJ004 --DCGPSVP-PG-PGVRCGCVGSDCRKW-PGGLSLGDRCCVHAPLAEPRPFVQ : .:: :: :. . :: . : ::. : : : ::: .. : FLJ003 QPPAGAGVPGPGRPARELLSVGLQRRPGAPGAASPGPRLQPHAPTGRARLGVRGPAGCQA 170 180 190 200 210 220 FLJ003 RSASVARRANSPRATSRLRPGLQLQPRGEHRPRDLHGDLLSPRRPPDDPWARPPRSDRFP 230 240 250 260 270 280 >>KIAA1870 ( 832 res) hh05136b (832 aa) initn: 132 init1: 61 opt: 114 Z-score: 95.8 bits: 26.7 E(): 3.9 Smith-Waterman score: 140; 27.807% identity (51.337% similar) in 187 aa overlap (4-179:57-224) 10 20 30 FLJ004 SLAPPIPSAQIPGSPARWLEPALRPLAGPPGTD :: :. : :.: :. . .:: : KIAA18 PPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQ----GRPGR---PGQQGVAGERG-H 30 40 50 60 70 40 50 60 70 80 FLJ004 LGVKG-----GPGQPTLAAMVAGDIRGRGASSPLGP--RVPPLAGPGSVSRRS-STRSFL :: .: ::. : . . :. .: ..:.:: .. : . ::.:.. . .. . KIAA18 LGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGM 80 90 100 110 120 130 90 100 110 120 130 140 FLJ004 RCRVAPEGCSWEPTL-DQSCREGVAGQGDHWPYHLWPGGPSLWLRLRVSRAIRGSLVRNH . ..: : : : : . :. .:: : . : : :. .:. : .. KIAA18 KGDLGPLGTPGEQGLIGQRGEPGL--EGDSGP--MGPDG------LKGDRGDPGPDGEHG 140 150 160 170 180 150 160 170 180 190 200 FLJ004 SQGQ-SMECDCGPSVPPG-PGVRCGCVGSDCRKWPGGLSLGDRCCVHAPLAEPRPFVQ .:: .. . :: ::: ::: : :.. .. : KIAA18 EKGQEGLMGEDGPPGPPGVTGVR-GPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDP 190 200 210 220 230 240 KIAA18 GPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGED 250 260 270 280 290 300 >>KIAA1311 ( 889 res) fh11512 (889 aa) initn: 52 init1: 52 opt: 112 Z-score: 94.1 bits: 26.4 E(): 4.8 Smith-Waterman score: 116; 27.329% identity (42.236% similar) in 161 aa overlap (4-149:146-304) 10 20 30 FLJ004 SLAPPIPSAQIPGSPARWLEPALRPLAGP-PGT :: : . : : : : . : :: :: KIAA13 FCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPM-PGPGPGPGP 120 130 140 150 160 170 40 50 60 70 80 FLJ004 DLGVKGGPGQPTLAAMVAGDIRGRGASSPLG----PRVPPLAGPGSVSRRSSTRSFLRCR : ::: .: .:.: : :: ::.. . .. :.. . KIAA13 GPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPR-PPITQSSLINSRDQPGTSAVPN 180 190 200 210 220 230 90 100 110 120 130 FLJ004 VAPEGCSWEPTLDQ------SCREGVAGQ--GDHWPYHLWPGGPS--LWLRLRVSRAIRG .: : : : : : :. . .. : .: : : : :: : . : KIAA13 LASVGTRLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMG 240 250 260 270 280 290 140 150 160 170 180 190 FLJ004 SLVRNHSQGQSMECDCGPSVPPGPGVRCGCVGSDCRKWPGGLSLGDRCCVHAPLAEPRPF : . :.. .: KIAA13 SSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRTQTQRPNLIGLTSG 300 310 320 330 340 350 >>KIAA1139 ( 1124 res) hk00330 (1124 aa) initn: 87 init1: 68 opt: 113 Z-score: 93.9 bits: 26.7 E(): 4.9 Smith-Waterman score: 113; 26.230% identity (45.902% similar) in 183 aa overlap (7-178:685-857) 10 20 30 FLJ004 SLAPPIPSAQIPGSP--ARWLEPALRPLAGPPGTDL ::. :: : : : :. :::::.: KIAA11 PEGTERPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPW---AFSYLAGPPATPP 660 670 680 690 700 710 40 50 60 70 80 90 FLJ004 GVKGGPGQPTLAAMVAGDIRGRGASSPLGPRVPPLAGPGSVSRRSSTRSFLRCR--VAPE : . . . : .: . . :: :.. ....:: . ...: :.: KIAA11 D-PPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPT 720 730 740 750 760 770 100 110 120 130 140 FLJ004 GCSWEPTLDQSC--REGVAGQGDHWPYHLWP-GGPSLWLRLRVSRAIRGSL-VRNHSQG- : .:: : : : .: .::: . :: .. . : KIAA11 PARGTPR-SQSFALRARRKGPPPPPPKRLSSVSGPS-----PEPPPLDGSPGPKEGATGP 780 790 800 810 820 150 160 170 180 190 200 FLJ004 --QSMECDCGPSVPPGPGVRCGCVGSDCRKWPGGLSLGDRCCVHAPLAEPRPFVQ ... ::: :::: . : ... .. :: KIAA11 RRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNLTIKQ 830 840 850 860 870 880 KIAA11 RPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATPGPAAPL 890 900 910 920 930 940 >>KIAA0407 ( 2143 res) hg01339 (2143 aa) initn: 107 init1: 66 opt: 116 Z-score: 93.6 bits: 27.6 E(): 5.1 Smith-Waterman score: 116; 37.778% identity (53.333% similar) in 90 aa overlap (2-91:687-769) 10 20 30 FLJ004 SLAPPIPSAQIPGSPARWLEPALRPLAGPPG :. : : :. ::. : . :: : KIAA04 WGCNWCVWQHLCTHKASCDAGPMVASHQSPLVSPDPPARGGPSPSPPTAP--KALATPAP 660 670 680 690 700 710 40 50 60 70 80 90 FLJ004 TDLGVKGGPGQPTLAAMVAGDIRGRGASSPLGPRVPPLAGPGSVSRRSSTRSFLRCRVAP : :. :: :. : .:.:: . ::: : : :: ::.: .:: : :. . .: KIAA04 DTLPVE--PGAPSTA--TASDI-SPGASPSLLSPWGPWAGSGSISSPGSTGSPLHEEPSP 720 730 740 750 760 100 110 120 130 140 150 FLJ004 EGCSWEPTLDQSCREGVAGQGDHWPYHLWPGGPSLWLRLRVSRAIRGSLVRNHSQGQSME KIAA04 PSPQNGPGTAVPAPTDFRPSATPEDLLASPLSPSEVAAVPPADPGPEALHPTVPLDLPPA 770 780 790 800 810 820 >>FLJ00201 ( 705 res) sj04110 (705 aa) initn: 184 init1: 82 opt: 110 Z-score: 93.5 bits: 26.0 E(): 5.2 Smith-Waterman score: 141; 32.787% identity (46.448% similar) in 183 aa overlap (4-178:174-345) 10 20 30 FLJ004 SLAPPIPSAQ-IPGSPARWLEPALRPLAGPPGT : :.:: .:: :. ::. . :::: FLJ002 LRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPG- 150 160 170 180 190 200 40 50 60 70 80 FLJ004 DLGVKG--GPGQPTL-AAMVAGDIRGR-GASSPLGPRVPPLAG-PGSVSRRSSTRSFLRC : :.:: : ::: : .: : : : .: : : : : ::. . .. .: FLJ002 DRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKG--ESGPPG 210 220 230 240 250 260 90 100 110 120 130 140 FLJ004 RVAPEGCSWEP-TLDQSCREGVAGQGDHWPYHL-WPGGPSLWLRLRVSRAIRGSLVRNHS .:.: :: .. . :: : : : : ::: . . :: FLJ002 VPGPRG---EPGAVGPKGPPGVDGVGVPGAAGLPGPQGPS---GAKGEPGTRGPPGLIGP 270 280 290 300 310 150 160 170 180 190 200 FLJ004 QGQSMECDCGPSVPPGPGVRCGCVGSDCRKWPGGLSLGDRCCVHAPLAEPRPFVQ : .: ::. ::. : .:. : :: FLJ002 TGYGMPGLPGPKGDRGPAGVPGLLGD--RGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPG 320 330 340 350 360 370 FLJ002 RRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPG 380 390 400 410 420 430 >>KIAA0596 ( 1531 res) hg01605 (1531 aa) initn: 60 init1: 60 opt: 114 Z-score: 93.5 bits: 27.1 E(): 5.2 Smith-Waterman score: 114; 31.132% identity (57.547% similar) in 106 aa overlap (3-98:1098-1198) 10 20 FLJ004 SLAPPIPSAQIPG-SPAR------WLEPALRP :: : .:.: : .: :. :: KIAA05 GPYGLQEGSPQTPDQEQFLKQHFETLASGAAPGAP-VQVPERSESRSISSRFLLQVQTRP 1070 1080 1090 1100 1110 1120 30 40 50 60 70 80 FLJ004 L--AGPPGTDLGVKGGPGQPTLAAMVAGDIRGRGASSPLGP-RVPPLAGPGSVSRRSSTR : .: ...:.. . :.: :. . . :: ::. : .: .: : .: : ..... KIAA05 LREPSPSSSSLALMSRPAQVPQAS--GEQPRGNGANPPGAPPEVEPSSGNPS-PQQAASV 1130 1140 1150 1160 1170 1180 90 100 110 120 130 140 FLJ004 SFLRCRVAPEGCSWEPTLDQSCREGVAGQGDHWPYHLWPGGPSLWLRLRVSRAIRGSLVR . :::. :.. :: : KIAA05 LLPRCRLNPDS-SWAPKRVATASPFSGLQKAQSVHSLVPQERHEASLQAPSPGALLSREI 1190 1200 1210 1220 1230 1240 200 residues in 1 query sequences 2210794 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:03:27 2009 done: Fri Feb 27 11:03:27 2009 Total Scan time: 0.370 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]