# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj09371.fasta.nr -Q ../query/FLJ00418.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 FLJ00418, 200 aa
 vs /cdna2/lib/nr/nr library

2693465022 residues in 7827732 sequences
 statistics sampled from 60000 to 7824539 sequences
  Expectation_n fit: rho(ln(x))= 5.3085+/-0.000195; mu= 8.8000+/- 0.011
 mean_var=99.8418+/-19.009, 0's: 42 Z-trim: 46  B-trim: 0 in 0/67
 Lambda= 0.128357

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(7827732)
gi|28273140|dbj|BAC56933.1| FLJ00418 protein [Homo ( 200) 1490 285.2 4.4e-75


>>gi|28273140|dbj|BAC56933.1| FLJ00418 protein [Homo sap  (200 aa)
 initn: 1490 init1: 1490 opt: 1490  Z-score: 1504.2  bits: 285.2 E(): 4.4e-75
Smith-Waterman score: 1490;  100.000% identity (100.000% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
FLJ004 SLAPPIPSAQIPGSPARWLEPALRPLAGPPGTDLGVKGGPGQPTLAAMVAGDIRGRGASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 SLAPPIPSAQIPGSPARWLEPALRPLAGPPGTDLGVKGGPGQPTLAAMVAGDIRGRGASS
               10        20        30        40        50        60

               70        80        90       100       110       120
FLJ004 PLGPRVPPLAGPGSVSRRSSTRSFLRCRVAPEGCSWEPTLDQSCREGVAGQGDHWPYHLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 PLGPRVPPLAGPGSVSRRSSTRSFLRCRVAPEGCSWEPTLDQSCREGVAGQGDHWPYHLW
               70        80        90       100       110       120

              130       140       150       160       170       180
FLJ004 PGGPSLWLRLRVSRAIRGSLVRNHSQGQSMECDCGPSVPPGPGVRCGCVGSDCRKWPGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 PGGPSLWLRLRVSRAIRGSLVRNHSQGQSMECDCGPSVPPGPGVRCGCVGSDCRKWPGGL
              130       140       150       160       170       180

              190       200
FLJ004 SLGDRCCVHAPLAEPRPFVQ
       ::::::::::::::::::::
gi|282 SLGDRCCVHAPLAEPRPFVQ
              190       200




200 residues in 1 query   sequences
2693465022 residues in 7827732 library sequences
 Tcomplib [34.26] (2 proc)
 start: Sat Feb 28 03:32:00 2009 done: Sat Feb 28 03:36:38 2009
 Total Scan time: 662.390 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]