# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj09455.fasta.nr -Q ../query/FLJ00253.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00253, 349 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7800114 sequences Expectation_n fit: rho(ln(x))= 7.2216+/-0.000218; mu= 1.5742+/- 0.012 mean_var=196.2332+/-37.412, 0's: 34 Z-trim: 107 B-trim: 142 in 1/65 Lambda= 0.091556 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676708|dbj|BAB85006.1| FLJ00253 protein [Homo ( 349) 2418 331.3 1.7e-88 gi|57162162|emb|CAI40012.1| novel protein [Homo sa ( 331) 2053 283.1 5.5e-74 gi|119568069|gb|EAW47684.1| AT rich interactive do ( 945) 1972 272.9 1.8e-70 gi|119568065|gb|EAW47680.1| AT rich interactive do (1261) 1969 272.6 2.9e-70 gi|119568066|gb|EAW47681.1| AT rich interactive do (2234) 1972 273.3 3.2e-70 gi|114609921|ref|XP_518822.2| PREDICTED: AT rich i (1801) 1970 272.9 3.4e-70 gi|22597106|gb|AAN03447.1|AF521671_1 SWI/SNF chrom (2165) 1969 272.9 4.2e-70 gi|119568067|gb|EAW47682.1| AT rich interactive do (2178) 1969 272.9 4.2e-70 gi|119568068|gb|EAW47683.1| AT rich interactive do (2191) 1969 272.9 4.2e-70 gi|119568063|gb|EAW47678.1| AT rich interactive do (2231) 1969 272.9 4.2e-70 gi|73921720|sp|Q8NFD5.2|ARI1B_HUMAN RecName: Full= (2236) 1969 272.9 4.2e-70 gi|18568414|gb|AAL76077.1|AF468300_1 BRG1-binding (1740) 1958 271.3 9.8e-70 gi|194227545|ref|XP_001493135.2| PREDICTED: AT ric (1724) 1931 267.8 1.2e-68 gi|57162161|emb|CAI40011.1| novel protein [Homo sa ( 724) 1923 266.3 1.4e-68 gi|55667869|emb|CAH71534.1| novel protein [Homo sa (1736) 1923 266.7 2.4e-68 gi|25005043|gb|AAN70985.1| BAF250b subunit [Homo s (1957) 1918 266.1 4.1e-68 gi|50347101|gb|AAT75226.1| 6A3-5 protein [Sus scro (1740) 1909 264.9 8.7e-68 gi|145553997|ref|NP_001078824.1| AT rich interacti (2244) 1907 264.7 1.2e-67 gi|148669707|gb|EDL01654.1| mCG5693 [Mus musculus] (1623) 1901 263.8 1.7e-67 gi|73946168|ref|XP_541164.2| PREDICTED: similar to (1918) 1900 263.7 2.1e-67 gi|118088409|ref|XP_001232096.1| PREDICTED: simila (1754) 1882 261.3 1e-66 gi|11527189|gb|AAG36928.1|AF259792_1 p250R [Homo s (1486) 1404 198.1 9.5e-48 gi|149028324|gb|EDL83740.1| rCG40749 [Rattus norve (1060) 1345 190.1 1.7e-45 gi|24459904|emb|CAD29425.1| transcription factor 1 (1758) 1253 178.2 1.1e-41 gi|56207916|emb|CAI21178.1| novel protein [Danio r (1840) 1239 176.4 4e-41 gi|125845821|ref|XP_698079.2| PREDICTED: si:dkey-6 (2081) 1239 176.5 4.3e-41 gi|109460737|ref|XP_001066861.1| PREDICTED: simila (1904) 1211 172.7 5.3e-40 gi|118101488|ref|XP_417691.2| PREDICTED: similar t ( 652) 1115 159.5 1.7e-36 gi|149409350|ref|XP_001505584.1| PREDICTED: simila (1638) 1109 159.2 5.4e-36 gi|5689365|dbj|BAA83073.1| B120 [Homo sapiens] (1119) 1057 152.1 4.9e-34 gi|123229220|emb|CAM25148.1| AT rich interactive d (1174) 1050 151.2 9.7e-34 gi|123229219|emb|CAM25147.1| AT rich interactive d (1681) 1050 151.4 1.2e-33 gi|73950153|ref|XP_865927.1| PREDICTED: similar to (1374) 1048 151.0 1.3e-33 gi|52139164|gb|AAH82554.1| AT rich interactive dom (1902) 1050 151.5 1.3e-33 gi|148698102|gb|EDL30049.1| mCG20806 [Mus musculus (1955) 1050 151.5 1.4e-33 gi|123229223|emb|CAM25152.1| AT rich interactive d (2042) 1050 151.5 1.4e-33 gi|123229222|emb|CAM25151.1| AT rich interactive d (2283) 1050 151.5 1.5e-33 gi|149024190|gb|EDL80687.1| AT rich interactive do (1911) 1048 151.2 1.6e-33 gi|56203232|emb|CAI21622.1| AT rich interactive do (1175) 1044 150.4 1.7e-33 gi|14133259|dbj|BAB55599.1| SWI related protein [H (1208) 1044 150.4 1.7e-33 gi|73950155|ref|XP_865949.1| PREDICTED: similar to (2138) 1048 151.2 1.7e-33 gi|119888752|ref|XP_592084.3| PREDICTED: similar t (2286) 1048 151.3 1.8e-33 gi|73950151|ref|XP_852546.1| PREDICTED: similar to (2355) 1048 151.3 1.8e-33 gi|168270882|dbj|BAG10234.1| AT-rich interactive d (1359) 1044 150.5 1.8e-33 gi|119628202|gb|EAX07797.1| AT rich interactive do (1374) 1044 150.5 1.9e-33 gi|68533099|dbj|BAE06104.1| ARID1A variant protein (1374) 1044 150.5 1.9e-33 gi|56203231|emb|CAI21621.1| AT rich interactive do (1685) 1044 150.6 2.1e-33 gi|119628199|gb|EAX07794.1| AT rich interactive do (1710) 1044 150.6 2.1e-33 gi|114554934|ref|XP_001144899.1| PREDICTED: AT ric (1839) 1044 150.6 2.2e-33 gi|114554936|ref|XP_001145054.1| PREDICTED: AT ric (1903) 1044 150.7 2.3e-33 >>gi|18676708|dbj|BAB85006.1| FLJ00253 protein [Homo sap (349 aa) initn: 2418 init1: 2418 opt: 2418 Z-score: 1744.8 bits: 331.3 E(): 1.7e-88 Smith-Waterman score: 2418; 100.000% identity (100.000% similar) in 349 aa overlap (1-349:1-349) 10 20 30 40 50 60 FLJ002 SQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPVEVLASEDAAFGLKDLSGSIDDLPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 SQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPVEVLASEDAAFGLKDLSGSIDDLPT 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 GTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 GTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSR 70 80 90 100 110 120 130 140 150 160 170 180 FLJ002 SGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 SGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQT 130 140 150 160 170 180 190 200 210 220 230 240 FLJ002 GPSMSPHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 GPSMSPHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGP 190 200 210 220 230 240 250 260 270 280 290 300 FLJ002 GPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 GPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPG 250 260 270 280 290 300 310 320 330 340 FLJ002 MGPPMPTVNRKAQEAAAAVMQAAANSAQSRYATQEHAPGRYAVCLPVTT ::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 MGPPMPTVNRKAQEAAAAVMQAAANSAQSRYATQEHAPGRYAVCLPVTT 310 320 330 340 >>gi|57162162|emb|CAI40012.1| novel protein [Homo sapien (331 aa) initn: 1578 init1: 1347 opt: 2053 Z-score: 1484.5 bits: 283.1 E(): 5.5e-74 Smith-Waterman score: 2252; 94.842% identity (94.842% similar) in 349 aa overlap (1-349:1-331) 10 20 30 40 50 60 FLJ002 SQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPVEVLASEDAAFGLKDLSGSIDDLPT ::::::::::::::::::::::::::::::::::: ::::::::::: gi|571 SQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLP--------------DLSGSIDDLPT 10 20 30 40 70 80 90 100 110 120 FLJ002 GTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 GTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSR 50 60 70 80 90 100 130 140 150 160 170 180 FLJ002 SGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQT ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|571 SGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERG----TQRNPQMAQYGPQQT 110 120 130 140 150 160 190 200 210 220 230 240 FLJ002 GPSMSPHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 GPSMSPHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGP 170 180 190 200 210 220 250 260 270 280 290 300 FLJ002 GPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 GPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPG 230 240 250 260 270 280 310 320 330 340 FLJ002 MGPPMPTVNRKAQEAAAAVMQAAANSAQSRYATQEHAPGRYAVCLPVTT ::::::::::::::::::::::::::::::::::::::::::::::::: gi|571 MGPPMPTVNRKAQEAAAAVMQAAANSAQSRYATQEHAPGRYAVCLPVTT 290 300 310 320 330 >>gi|119568069|gb|EAW47684.1| AT rich interactive domain (945 aa) initn: 1963 init1: 1963 opt: 1972 Z-score: 1421.3 bits: 272.9 E(): 1.8e-70 Smith-Waterman score: 2171; 92.241% identity (92.529% similar) in 348 aa overlap (1-340:587-920) 10 20 30 FLJ002 SQEGYGTRSQPPLAPGKPNHEDLNLIQQER :::::::::::::::::::::::::::::: gi|119 SQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQER 560 570 580 590 600 610 40 50 60 70 80 90 FLJ002 PSSLPVEVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF ::::: ::::::::::::::::::::::::::::::::::::::::: gi|119 PSSLP--------------DLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF 620 630 640 650 660 100 110 120 130 140 150 FLJ002 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA 670 680 690 700 710 720 160 170 180 190 200 210 FLJ002 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY 730 740 750 760 770 780 220 230 240 250 260 270 FLJ002 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP 790 800 810 820 830 840 280 290 300 310 320 330 FLJ002 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR 850 860 870 880 890 900 340 FLJ002 --------YATQEHAPGRYAVCLPVTT : .: : :: gi|119 PPYIRSPAYPSQSGAGGRPMFSSQHPNYGNSQAPMVHQPDQYG 910 920 930 940 >>gi|119568065|gb|EAW47680.1| AT rich interactive domain (1261 aa) initn: 2314 init1: 1960 opt: 1969 Z-score: 1417.7 bits: 272.6 E(): 2.9e-70 Smith-Waterman score: 2168; 94.100% identity (94.100% similar) in 339 aa overlap (1-339:587-908) 10 20 30 FLJ002 SQEGYGTRSQPPLAPGKPNHEDLNLIQQER :::::::::::::::::::::::::::::: gi|119 SQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQER 560 570 580 590 600 610 40 50 60 70 80 90 FLJ002 PSSLPVEVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF ::::: ::::::::::::::::::::::::::::::::::::::::: gi|119 PSSLP--------------DLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF 620 630 640 650 660 100 110 120 130 140 150 FLJ002 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA 670 680 690 700 710 720 160 170 180 190 200 210 FLJ002 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY 730 740 750 760 770 780 220 230 240 250 260 270 FLJ002 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP 790 800 810 820 830 840 280 290 300 310 320 330 FLJ002 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR 850 860 870 880 890 900 340 FLJ002 YATQEHAPGRYAVCLPVTT : :: gi|119 ---QGSFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMM 910 920 930 940 950 >>gi|119568066|gb|EAW47681.1| AT rich interactive domain (2234 aa) initn: 1963 init1: 1963 opt: 1972 Z-score: 1416.9 bits: 273.3 E(): 3.2e-70 Smith-Waterman score: 2171; 92.241% identity (92.529% similar) in 348 aa overlap (1-340:587-920) 10 20 30 FLJ002 SQEGYGTRSQPPLAPGKPNHEDLNLIQQER :::::::::::::::::::::::::::::: gi|119 SQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQER 560 570 580 590 600 610 40 50 60 70 80 90 FLJ002 PSSLPVEVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF ::::: ::::::::::::::::::::::::::::::::::::::::: gi|119 PSSLP--------------DLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF 620 630 640 650 660 100 110 120 130 140 150 FLJ002 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA 670 680 690 700 710 720 160 170 180 190 200 210 FLJ002 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY 730 740 750 760 770 780 220 230 240 250 260 270 FLJ002 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP 790 800 810 820 830 840 280 290 300 310 320 330 FLJ002 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR 850 860 870 880 890 900 340 FLJ002 --------YATQEHAPGRYAVCLPVTT : .: : :: gi|119 PPYIRSPAYPSQSGAGGRPMFSSQHPNYGNSQAPMVHQPDQYGQGSFPGMNQSGLMASSS 910 920 930 940 950 960 >>gi|114609921|ref|XP_518822.2| PREDICTED: AT rich inter (1801 aa) initn: 2276 init1: 1960 opt: 1970 Z-score: 1416.5 bits: 272.9 E(): 3.4e-70 Smith-Waterman score: 2165; 93.805% identity (94.100% similar) in 339 aa overlap (1-339:197-518) 10 20 30 FLJ002 SQEGYGTRSQPPLAPGKPNHEDLNLIQQER :::::::::::::::::::::::::.:::: gi|114 SQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLMQQER 170 180 190 200 210 220 40 50 60 70 80 90 FLJ002 PSSLPVEVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF ::::: ::::::::::::::::::::::::::::::::::::::::: gi|114 PSSLP--------------DLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF 230 240 250 260 270 100 110 120 130 140 150 FLJ002 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA 280 290 300 310 320 330 160 170 180 190 200 210 FLJ002 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY 340 350 360 370 380 390 220 230 240 250 260 270 FLJ002 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP 400 410 420 430 440 450 280 290 300 310 320 330 FLJ002 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR 460 470 480 490 500 510 340 FLJ002 YATQEHAPGRYAVCLPVTT : :: gi|114 ---QGSFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASMGLADMM 520 530 540 550 560 >>gi|22597106|gb|AAN03447.1|AF521671_1 SWI/SNF chromatin (2165 aa) initn: 2276 init1: 1960 opt: 1969 Z-score: 1414.9 bits: 272.9 E(): 4.2e-70 Smith-Waterman score: 2168; 94.100% identity (94.100% similar) in 339 aa overlap (1-339:561-882) 10 20 30 FLJ002 SQEGYGTRSQPPLAPGKPNHEDLNLIQQER :::::::::::::::::::::::::::::: gi|225 SQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQER 540 550 560 570 580 590 40 50 60 70 80 90 FLJ002 PSSLPVEVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF ::::: ::::::::::::::::::::::::::::::::::::::::: gi|225 PSSLP--------------DLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF 600 610 620 630 100 110 120 130 140 150 FLJ002 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|225 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA 640 650 660 670 680 690 160 170 180 190 200 210 FLJ002 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|225 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY 700 710 720 730 740 750 220 230 240 250 260 270 FLJ002 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|225 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP 760 770 780 790 800 810 280 290 300 310 320 330 FLJ002 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|225 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR 820 830 840 850 860 870 340 FLJ002 YATQEHAPGRYAVCLPVTT : :: gi|225 ---QGSFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMM 880 890 900 910 920 930 >>gi|119568067|gb|EAW47682.1| AT rich interactive domain (2178 aa) initn: 2276 init1: 1960 opt: 1969 Z-score: 1414.8 bits: 272.9 E(): 4.2e-70 Smith-Waterman score: 2168; 94.100% identity (94.100% similar) in 339 aa overlap (1-339:574-895) 10 20 30 FLJ002 SQEGYGTRSQPPLAPGKPNHEDLNLIQQER :::::::::::::::::::::::::::::: gi|119 SQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQER 550 560 570 580 590 600 40 50 60 70 80 90 FLJ002 PSSLPVEVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF ::::: ::::::::::::::::::::::::::::::::::::::::: gi|119 PSSLP--------------DLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF 610 620 630 640 100 110 120 130 140 150 FLJ002 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA 650 660 670 680 690 700 160 170 180 190 200 210 FLJ002 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY 710 720 730 740 750 760 220 230 240 250 260 270 FLJ002 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP 770 780 790 800 810 820 280 290 300 310 320 330 FLJ002 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR 830 840 850 860 870 880 340 FLJ002 YATQEHAPGRYAVCLPVTT : :: gi|119 ---QGSFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMM 890 900 910 920 930 940 >>gi|119568068|gb|EAW47683.1| AT rich interactive domain (2191 aa) initn: 2276 init1: 1960 opt: 1969 Z-score: 1414.8 bits: 272.9 E(): 4.2e-70 Smith-Waterman score: 2168; 94.100% identity (94.100% similar) in 339 aa overlap (1-339:587-908) 10 20 30 FLJ002 SQEGYGTRSQPPLAPGKPNHEDLNLIQQER :::::::::::::::::::::::::::::: gi|119 SQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQER 560 570 580 590 600 610 40 50 60 70 80 90 FLJ002 PSSLPVEVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF ::::: ::::::::::::::::::::::::::::::::::::::::: gi|119 PSSLP--------------DLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF 620 630 640 650 660 100 110 120 130 140 150 FLJ002 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA 670 680 690 700 710 720 160 170 180 190 200 210 FLJ002 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY 730 740 750 760 770 780 220 230 240 250 260 270 FLJ002 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP 790 800 810 820 830 840 280 290 300 310 320 330 FLJ002 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR 850 860 870 880 890 900 340 FLJ002 YATQEHAPGRYAVCLPVTT : :: gi|119 ---QGSFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMM 910 920 930 940 950 >>gi|119568063|gb|EAW47678.1| AT rich interactive domain (2231 aa) initn: 2276 init1: 1960 opt: 1969 Z-score: 1414.7 bits: 272.9 E(): 4.2e-70 Smith-Waterman score: 2168; 94.100% identity (94.100% similar) in 339 aa overlap (1-339:574-895) 10 20 30 FLJ002 SQEGYGTRSQPPLAPGKPNHEDLNLIQQER :::::::::::::::::::::::::::::: gi|119 SQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQER 550 560 570 580 590 600 40 50 60 70 80 90 FLJ002 PSSLPVEVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF ::::: ::::::::::::::::::::::::::::::::::::::::: gi|119 PSSLP--------------DLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF 610 620 630 640 100 110 120 130 140 150 FLJ002 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPA 650 660 670 680 690 700 160 170 180 190 200 210 FLJ002 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTY 710 720 730 740 750 760 220 230 240 250 260 270 FLJ002 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMP 770 780 790 800 810 820 280 290 300 310 320 330 FLJ002 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSR 830 840 850 860 870 880 340 FLJ002 YATQEHAPGRYAVCLPVTT : :: gi|119 ---QGSFPGMNQSGLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMM 890 900 910 920 930 940 349 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 01:56:45 2009 done: Sat Feb 28 02:02:41 2009 Total Scan time: 817.530 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]