# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj09520.fasta.huge -Q ../query/FLJ00254.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00254, 225 aa vs ./tmplib.10216 library 2210769 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.3592+/-0.00392; mu= 15.6127+/- 0.264 mean_var=94.3587+/-21.332, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.132033 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0029 ( 974 res) ha00566 ( 974) 98 28.6 1.4 FLJ00184 ( 580 res) sj01836 ( 580) 95 27.7 1.5 FLJ00263 ( 764 res) sj01530 ( 764) 96 28.0 1.5 KIAA0672 ( 824 res) hk02382 ( 824) 93 27.5 2.4 KIAA1741 ( 1777 res) fh23254 (1777) 95 28.4 2.9 FLJ00256 ( 856 res) sj09675 ( 856) 89 26.8 4.2 FLJ00280 ( 440 res) sh01728 ( 440) 85 25.6 4.8 KIAA0458 ( 1552 res) ef01252 (1552) 90 27.3 5.1 KIAA1097 ( 980 res) hk07058 ( 980) 87 26.5 5.9 KIAA0586 ( 1576 res) hj01033 (1576) 88 26.9 6.8 KIAA0841 ( 641 res) hk04975 ( 641) 84 25.6 6.8 KIAA0863 ( 1181 res) hk06535 (1181) 86 26.4 7.4 FLJ00275 ( 382 res) sh00566 ( 382) 81 24.7 7.5 KIAA1685 ( 1505 res) pf04287 (1505) 86 26.5 8.6 KIAA0299 ( 1907 res) hf00368 (1907) 87 26.9 8.6 KIAA1221 ( 1282 res) fh03522 (1282) 85 26.2 8.9 KIAA0292 ( 1716 res) ha06353 (1716) 85 26.4 11 KIAA1332 ( 651 res) fh15405 ( 651) 80 24.9 12 KIAA1762 ( 1460 res) fh27937(revised) (1460) 83 25.9 13 KIAA1910 ( 760 res) fh21867 ( 760) 80 25.0 13 KIAA1772 ( 752 res) pj02583(revised) ( 752) 78 24.6 17 KIAA0312 ( 3192 res) ff01724 (3192) 84 26.6 17 KIAA0622 ( 1289 res) hg04583 (1289) 80 25.3 17 KIAA0595 ( 1666 res) hj02929s1 (1666) 81 25.6 18 KIAA0385 ( 1380 res) hh00802 (1380) 80 25.3 18 FLJ00236 ( 702 res) sj07289 ( 702) 77 24.4 18 KIAA2037 ( 494 res) pj01545 ( 494) 75 23.8 19 KIAA0200 ( 1042 res) ha02508 (1042) 78 24.8 20 KIAA1847 ( 564 res) bm00425 ( 564) 75 23.8 21 KIAA0058 ( 181 res) ha01532 ( 181) 70 22.2 21 KIAA0393 ( 1433 res) hg01266(revised) (1433) 79 25.2 21 KIAA0306 ( 1451 res) hg00063 (1451) 79 25.2 21 KIAA1030 ( 763 res) fh00432 ( 763) 76 24.2 22 KIAA1057 ( 977 res) hh11838 ( 977) 77 24.6 22 FLJ00163 ( 521 res) sh06933 ( 521) 73 23.4 26 KIAA0627 ( 1324 res) hh01026s2 (1324) 77 24.7 26 KIAA1071 ( 675 res) hj05664s2 ( 675) 74 23.8 26 KIAA1220 ( 791 res) fh03489 ( 791) 74 23.9 29 KIAA0141 ( 536 res) ha03721 ( 536) 72 23.2 30 KIAA1148 ( 543 res) bg00390 ( 543) 72 23.2 30 KIAA0689 ( 547 res) hk03417 ( 547) 72 23.2 30 KIAA1558 ( 882 res) hj01607 ( 882) 74 23.9 31 KIAA1394 ( 1003 res) hj07546 (1003) 74 24.0 33 KIAA1080 ( 517 res) hj07082 ( 517) 71 23.0 33 KIAA0241 ( 522 res) ha04847 ( 522) 71 23.0 33 KIAA0091 ( 1058 res) ha01032 (1058) 74 24.0 34 FLJ00067 ( 574 res) as00067 ( 574) 71 23.1 35 KIAA1251 ( 1483 res) hh07943 (1483) 75 24.4 36 KIAA1386 ( 1214 res) fj06274 (1214) 74 24.1 37 KIAA1446 ( 645 res) fg06734 ( 645) 71 23.2 38 >>KIAA0029 ( 974 res) ha00566 (974 aa) initn: 73 init1: 49 opt: 98 Z-score: 103.9 bits: 28.6 E(): 1.4 Smith-Waterman score: 98; 27.273% identity (53.030% similar) in 132 aa overlap (91-212:532-659) 70 80 90 100 110 FLJ002 PLTITPSDPLAKFLLPLPATLRSAGLEVLVPEGGMLPPGDTTISLNWKLRLPTGHFGL-L :. .: . :: : :. . : . KIAA00 PVLQQQGYIQQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYNSHLNQPLPQPAQQTGYQV 510 520 530 540 550 560 120 130 140 150 160 170 FLJ002 LPLSQQAKKGVAVLAGVIDLDYQDEISLL---LHNRSKKEYAWNTGDPLGRPLVLPCSVI .: .:: .:.. :: . . :. .: . :. . :. : . :: . KIAA00 IPNQQQNYQGIV---GVQQPQSQSLVSGQPNSIGNQIQGVVIPYTSVPT-YQVSLPQGSQ 570 580 590 600 610 180 190 200 210 220 FLJ002 KV-NRKLQQPN--PGRTTNGSDPS-GMTVW--VTPPGKKHNLLRCLLKAKRIQNG . .. ::: :.....:: :. :: :. : :::...:: KIAA00 GIPHQTYQQPVMFPNQSNQGSMPTTGMPVYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFP 620 630 640 650 660 670 KIAA00 RTTSPCSSQQLQGHQCTAGPPPPPGGGMVMMQLSVPNNPQSCAHSPPQWKQNKYYCDHQR 680 690 700 710 720 730 >>FLJ00184 ( 580 res) sj01836 (580 aa) initn: 87 init1: 61 opt: 95 Z-score: 103.2 bits: 27.7 E(): 1.5 Smith-Waterman score: 95; 33.846% identity (50.769% similar) in 65 aa overlap (34-98:69-130) 10 20 30 40 50 60 FLJ002 LLKSQLKCQLGDNTLQGWGKVLQKAVCALNQHPIYGTLSPIATIHGSRNQGVEVQVAPLT : : : :. : .:. :. .: : FLJ001 SAPSGSGSSWVQGDDPSMSLTHKGDGESQPQFPAV-PLEPLPTTEGT--PGLPLQQAEER 40 50 60 70 80 90 70 80 90 100 110 120 FLJ002 ITPSDPLAKFLLPLPATLRSAGLEVLVPEGGMLPPGDTTISLNWKLRLPTGHFGLLLPLS ..::: ::: . : :.: .: : :. : FLJ001 YESQEPLAGQESPLPLATREAALPILEPVLGQEQPAAPDQPCVLFADAPEPGQALPVEEE 100 110 120 130 140 150 130 140 150 160 170 180 FLJ002 QQAKKGVAVLAGVIDLDYQDEISLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVNRKLQ FLJ001 AVTLARAETTQARTEAQDLCRASPEPPGPESSSRWLDDLLASPPPSGGGARRGAGAELKD 160 170 180 190 200 210 >>FLJ00263 ( 764 res) sj01530 (764 aa) initn: 61 init1: 61 opt: 96 Z-score: 103.0 bits: 28.0 E(): 1.5 Smith-Waterman score: 103; 31.481% identity (57.407% similar) in 108 aa overlap (19-118:627-722) 10 20 30 40 FLJ002 RNGLLKSQLKCQLGDNTLQGWG---KVL-QKAVCALNQHPIYGTLSPI .::. .:: :. . :..:: FLJ002 PASRASRGGLSPFHAPAQSPGLHGGAAGSREGWSLLEEVLEQQRLLQLQHHP-------- 600 610 620 630 640 50 60 70 80 90 100 FLJ002 ATIHGSRNQGVEVQVAPLTITPSD-PLAKFLLPLPATLRSAGLEVLVP---EGGMLPPGD :. : .:. . ::..:.: : : : :::.:: ..:: .: : . : : .. FLJ002 AAAPGC-SQAPQPAPAPFVIAPCDGPGAA---PLPSTLLTSGLPLLPPPLLQTGASPVAS 650 660 670 680 690 700 110 120 130 140 150 160 FLJ002 TTISLNWKLRLPTGHFGLLLPLSQQAKKGVAVLAGVIDLDYQDEISLLLHNRSKKEYAWN .. :. .:.. :: .: FLJ002 AAQLLDTHLHIGTGPTALPAVPPPRLARLAPGCEPLGLLQGDCEMEDLMPCSLGTFVLVQ 710 720 730 740 750 760 >>KIAA0672 ( 824 res) hk02382 (824 aa) initn: 85 init1: 60 opt: 93 Z-score: 99.5 bits: 27.5 E(): 2.4 Smith-Waterman score: 93; 31.707% identity (48.780% similar) in 82 aa overlap (49-125:535-615) 20 30 40 50 60 70 FLJ002 QGWGKVLQKAVCALNQHPIYGTLSPIATIHGSRNQGVEVQVAPLTITPSDPLAKFLLPLP :: . : .:. :: .. : : :.. ::: KIAA06 MMLEFYKKDGLRKIQSMGVRVMDTNWVARRGS-SAGRKVSCAPPSMQPPAPPAELAAPLP 510 520 530 540 550 560 80 90 100 110 120 130 FLJ002 ATLRSAGLE-----VLVPEGGMLPPGDTTISLNWKLRLPTGHFGLLLPLSQQAKKGVAVL . : :. .: : : : :: : . . .: : : :.: KIAA06 SPLPEQPLDSPAAPALSPSGLGLQPGPERTSTTKSKELSPGSAQKGSPGSSQGTACAGTQ 570 580 590 600 610 620 140 150 160 170 180 190 FLJ002 AGVIDLDYQDEISLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVNRKLQQPNPGRTTNG KIAA06 PGAQPGAQPGASPSPSQPPADQSPHTLRKVSKKLAPIPPKVPFGQPGAMADQSAGQLSPV 630 640 650 660 670 680 >>KIAA1741 ( 1777 res) fh23254 (1777 aa) initn: 123 init1: 61 opt: 95 Z-score: 98.1 bits: 28.4 E(): 2.9 Smith-Waterman score: 95; 33.846% identity (50.769% similar) in 65 aa overlap (34-98:611-672) 10 20 30 40 50 60 FLJ002 LLKSQLKCQLGDNTLQGWGKVLQKAVCALNQHPIYGTLSPIATIHGSRNQGVEVQVAPLT : : : :. : .:. :. .: : KIAA17 SAPSGSGSSWVQGDDPSMSLTQKGDGESQPQFPAV-PLEPLPTTEGT--PGLPLQQAEER 590 600 610 620 630 70 80 90 100 110 120 FLJ002 ITPSDPLAKFLLPLPATLRSAGLEVLVPEGGMLPPGDTTISLNWKLRLPTGHFGLLLPLS ..::: ::: . : :.: .: : :. : KIAA17 YESQEPLAGQESPLPLATREAALPILEPVLGQEQPAAPDQPCVLFADAPEPGQALPVEEE 640 650 660 670 680 690 130 140 150 160 170 180 FLJ002 QQAKKGVAVLAGVIDLDYQDEISLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVNRKLQ KIAA17 AVTLARAETTQARTEAQDLCRASPEPPGPESSSRWLDDLLASPPPSGGGARRGAGAELKD 700 710 720 730 740 750 >>FLJ00256 ( 856 res) sj09675 (856 aa) initn: 55 init1: 55 opt: 89 Z-score: 95.2 bits: 26.8 E(): 4.2 Smith-Waterman score: 89; 27.206% identity (51.471% similar) in 136 aa overlap (4-131:229-357) 10 20 30 FLJ002 RNGLLKSQLKCQLGDNTLQGWGKVLQKAVCALN :: . ::: .. . :..:. . . FLJ002 PVSTELIYRQVLRGVWSGEYSFEKEEELVELLARHCYVQLGASAES---KAVQELLPSCI 200 210 220 230 240 250 40 50 60 70 80 FLJ002 QHPIYGTLSP-----IATIHGSRNQGVEVQVAPLTITPS--DPLAKFLLPLPATLRSAGL : .: : : ..: .. .. ::.::.. . : :.. :: : : . FLJ002 PHKLYRTKPPDRWASLVTAACAKAPYTQKQVTPLAVREQVVDA-ARLQWPL---LFSRLF 260 270 280 290 300 310 90 100 110 120 130 140 FLJ002 EVLVPEGGMLPPGDTTISLNWK-LRLPTGHFGLLLPLSQQAKKGVAVLAGVIDLDYQDEI ::.. : :: . ...::: : . . .:: :: :.: FLJ002 EVITLSGPRLPKTQLILAVNWKGLCFLDQQEKMLLELSFPEVMGLATNREAQGGQRLLLS 320 330 340 350 360 370 150 160 170 180 190 200 FLJ002 SLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVNRKLQQPNPGRTTNGSDPSGMTVWVTP FLJ002 TMHEEYEFVSPSSVAIAELVALFLEGLKERSIFAMALQDRKATDDTTLLAFKKGDLLVLT 380 390 400 410 420 430 >>FLJ00280 ( 440 res) sh01728 (440 aa) initn: 44 init1: 44 opt: 85 Z-score: 94.1 bits: 25.6 E(): 4.8 Smith-Waterman score: 85; 34.783% identity (48.913% similar) in 92 aa overlap (13-99:162-248) 10 20 30 40 FLJ002 RNGLLKSQLKCQLGDNTLQGWGKVLQKAVCALNQH-PIYGTL :: . . : . .: . : : : : FLJ002 HTSPSWDILPTPGMLPSPRTLPAPRTHSYFLGRSPFPGHSPLLGHY--PLPGHTPRYRDT 140 150 160 170 180 50 60 70 80 90 FLJ002 SPIATIHGSRNQGVEVQVAPLTI-TP--SDPL-AKFLLPLPATLRSAGLEVLVPEGGMLP : ::. . .. :::.. :: : : : :: : :: : : .: : : . : FLJ002 PPSRDTPPSRDIPLSLD-APLSLDTPYSRDTLPATGTLPPPRTLPSPG--TLPPSGTLPP 190 200 210 220 230 240 100 110 120 130 140 150 FLJ002 PGDTTISLNWKLRLPTGHFGLLLPLSQQAKKGVAVLAGVIDLDYQDEISLLLHNRSKKEY :: FLJ002 PGTVPTPGTLPSPGTLPAPRTLPTPGTLPSPRTLPTPRTLPTPGTLPRPGTSYVLYGTVG 250 260 270 280 290 300 >>KIAA0458 ( 1552 res) ef01252 (1552 aa) initn: 42 init1: 42 opt: 90 Z-score: 93.6 bits: 27.3 E(): 5.1 Smith-Waterman score: 90; 24.432% identity (46.023% similar) in 176 aa overlap (42-206:779-952) 20 30 40 50 60 70 FLJ002 QLGDNTLQGWGKVLQKAVCALNQHPIYGTLSPIATIHGSRNQGVEVQVAPLTITPSDPLA .:. : .. ... : : : : KIAA04 TPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSP 750 760 770 780 790 800 80 90 100 110 120 FLJ002 KF-LLPLP--ATLRSAGLEVLVPEGGMLPPGDTTISLNWKLRLP--TGHFGLLLPLSQ-Q . : :: : :: .. : :. ::: ... . :. : ::: :: : KIAA04 HPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQ 810 820 830 840 850 860 130 140 150 160 170 180 FLJ002 AKKGVAVLAGV--IDLDYQDEISLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVNRKLQ : :.. :. .:. : : .. .: . ::. : . : . . .: KIAA04 APLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPA-PLAMPHIKPPPTTPIP-QLP 870 880 890 900 910 920 190 200 210 220 FLJ002 QPNPGRTT---NGSDPSGMTVWVTPPGKKHNLLRCLLKAKRIQNG :. . .: .: .:.. . :: KIAA04 APQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSS 930 940 950 960 970 980 >>KIAA1097 ( 980 res) hk07058 (980 aa) initn: 34 init1: 34 opt: 87 Z-score: 92.6 bits: 26.5 E(): 5.9 Smith-Waterman score: 87; 28.947% identity (61.842% similar) in 76 aa overlap (137-209:430-494) 110 120 130 140 150 160 FLJ002 WKLRLPTGHFGLLLPLSQQAKKGVAVLAGVIDLDYQDEISLLLHNRSKKEYAWNT-GDPL .::. :. ... .:.:.. :: .. .. : KIAA10 DWQKEKMCNKINKVNSEGEFDKDRDSISETVDLNNQETVKVQIHSRAS-EYITDVHSNDL 400 410 420 430 440 450 170 180 190 200 210 220 FLJ002 GRPLVLPCSVIKVNRKLQQPNPGRTTNGSDPSGMTVW--VTPPGKKHNLLRCLLKAKRIQ . : .:: : :: .: ..: :.. ..: ..:: :: KIAA10 STPQILP-SNEGVNPRL---------SASPPKSGNLWPGLAPPHKKAQSASPKRKKQHKK 460 470 480 490 500 FLJ002 NG KIAA10 YRSVISDIFDGTIISSVQCLTCDRVSVTLETFQDLSLPIPGKEDLAKLHSSSHPTSIVKA 510 520 530 540 550 560 >>KIAA0586 ( 1576 res) hj01033 (1576 aa) initn: 73 init1: 50 opt: 88 Z-score: 91.5 bits: 26.9 E(): 6.8 Smith-Waterman score: 96; 24.766% identity (45.794% similar) in 214 aa overlap (1-205:655-845) 10 20 FLJ002 RNGLLKSQLKCQLGDNTLQGWGK-VLQKAV ..::::. : : :: .:: : : KIAA05 PRKHSQKQIEEHFRNLPMRGMPASSLQKERKEGLLKATTVIQDEDYMLQVYGKPVYQGHR 630 640 650 660 670 680 30 40 50 60 70 80 FLJ002 CALNQHPIYGTLSPIATIHGSRNQGVEVQVAPLTITPSDPLAKFLLPLPATLRSAGLEVL .:.. : :: . .: . .: .: . . : : . : .. KIAA05 STLKKGPYLRFNSPSPKSRPQRPKVIE-RVKGTKVKSIRTQTDFYATKPKKMDSK-MKHS 690 700 710 720 730 740 90 100 110 120 130 140 FLJ002 VPEGGMLPPGDTTISLNWKLRLPT--GHF-GLLLPLSQQAKKGVAVLAGVI--DLDYQDE :: .:: :: .. . ..:: : . : :.:. :.: : . : . KIAA05 VP---VLPHGDQQYLFSPSREMPTFSGTLEGHLIPM--------AILLGQTQSNSDTMPP 750 760 770 780 790 150 160 170 180 190 200 FLJ002 ISLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVNRKLQQPNPG---RTTNGSDPSGMTV .... :: . :. .: : ::. ...:: . .. .:: .:: KIAA05 AGVIV---SKPH-------PVTVTTSIPPSSRKVETGVKKPNIAIVEMKSEKKDPPQLTV 800 810 820 830 840 210 220 FLJ002 WVTPPGKKHNLLRCLLKAKRIQNG : : KIAA05 QVLPSVDIDSISNSSADVLSPLSSPKEASPPPVQTWIKTPEIMKVDEEEVKFPGTNFDEI 850 860 870 880 890 900 225 residues in 1 query sequences 2210769 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:47:04 2009 done: Fri Feb 27 10:47:04 2009 Total Scan time: 0.390 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]