# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj09520.fasta.nr -Q ../query/FLJ00254.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00254, 225 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826218 sequences Expectation_n fit: rho(ln(x))= 5.2380+/-0.000183; mu= 8.6260+/- 0.010 mean_var=68.9031+/-13.807, 0's: 33 Z-trim: 40 B-trim: 2128 in 1/65 Lambda= 0.154509 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676710|dbj|BAB85007.1| FLJ00254 protein [Homo ( 225) 1522 347.5 9.9e-94 gi|149261035|ref|XP_001478138.1| PREDICTED: simila (1129) 1024 236.9 9.5e-60 gi|7522108|pir||T29097 pro-pol-dUTPase polyprotein (1182) 1011 234.0 7.4e-59 gi|34528257|dbj|BAC85476.1| unnamed protein produc ( 134) 655 154.1 9.8e-36 gi|23484307|gb|EAA19685.1| RNase H, putative [Plas ( 962) 405 98.9 2.9e-18 gi|74722930|sp|Q6ZN92.1|DUTL_HUMAN RecName: Full=P ( 141) 299 74.7 7.9e-12 gi|114623961|ref|XP_001153492.1| PREDICTED: hypoth ( 140) 294 73.6 1.7e-11 gi|119590193|gb|EAW69787.1| hCG1986656 [Homo sapie ( 214) 226 58.6 8.8e-07 gi|159102716|gb|EDP41616.1| hypothetical protein M ( 152) 196 51.8 6.8e-05 gi|47176919|gb|AAT12494.1| pol polyprotein [Feline (1124) 205 54.4 8.6e-05 gi|50254818|gb|EAL17563.1| hypothetical protein CN ( 163) 193 51.1 0.00012 gi|221112472|ref|XP_002155284.1| PREDICTED: simila ( 140) 192 50.9 0.00012 gi|223365797|pdb|3C3I|A Chain A, Evolution Of Chlo ( 141) 192 50.9 0.00012 gi|156068505|gb|ABU44212.1| hypothetical protein A ( 141) 192 50.9 0.00012 gi|57230615|gb|AAW46925.1| dUTP diphosphatase, put ( 176) 193 51.2 0.00012 gi|67973084|gb|AAY84050.1| dUTPase [Chrysodeixis c ( 166) 192 50.9 0.00014 gi|155123272|gb|ABT15140.1| hypothetical protein N ( 141) 191 50.7 0.00014 gi|57545047|gb|AAW51452.1| deoxyuridine triphospha ( 141) 190 50.4 0.00016 gi|149388333|gb|EAZ63356.2| Deoxyuridine 5'-tripho ( 161) 190 50.5 0.00018 gi|20152979|gb|AAM13444.1|AF474246_2 pol polyprote (1130) 200 53.2 0.00019 gi|87042744|gb|ABD16379.1| pol protein [Feline imm ( 322) 192 51.1 0.00023 gi|57545049|gb|AAW51453.1| deoxyuridine triphospha ( 141) 187 49.8 0.00026 gi|3913545|sp|O41033.1|DUT_PBCV1 RecName: Full=Deo ( 141) 187 49.8 0.00026 gi|4377544|emb|CAA40318.1| POL [Feline immunodefic (1124) 194 51.9 0.00047 gi|221090793|ref|XP_002159664.1| PREDICTED: simila ( 143) 183 48.9 0.00049 gi|221111538|ref|XP_002156839.1| PREDICTED: simila ( 133) 182 48.6 0.00053 gi|221091697|ref|XP_002170261.1| PREDICTED: simila ( 143) 182 48.7 0.00057 gi|52549096|gb|AAU82945.1| dUTPase [uncultured arc ( 160) 182 48.7 0.00062 gi|56404357|sp|Q6BRN7.1|DUT_DEBHA RecName: Full=De ( 160) 182 48.7 0.00062 gi|10120534|pdb|1F7D|A Chain A, Crystal Structures ( 136) 181 48.4 0.00064 gi|160337084|gb|ABX25830.1| pol protein [Feline im (1148) 192 51.5 0.00065 gi|221106567|ref|XP_002170124.1| PREDICTED: simila ( 143) 181 48.4 0.00066 gi|221125114|ref|XP_002157289.1| PREDICTED: simila ( 133) 180 48.2 0.00073 gi|45549788|gb|AAS67744.1| polyprotein [Feline imm ( 216) 182 48.8 0.00079 gi|87042742|gb|ABD16378.1| pol protein [Feline imm (1086) 190 51.0 0.00085 gi|45549790|gb|AAS67745.1| polyprotein [Feline imm ( 216) 181 48.5 0.00092 gi|738401|prf||1924472A deoxyuridine triphosphatas ( 130) 178 47.7 0.00097 gi|1942421|pdb|1DUT|A Chain A, Fiv Dutp Pyrophosph ( 133) 178 47.7 0.00099 gi|221107586|ref|XP_002160651.1| PREDICTED: simila ( 133) 178 47.7 0.00099 gi|1899038|gb|AAB49923.1| Pol polyprotein (1150) 188 50.6 0.0012 gi|51980735|gb|AAU20798.1| pol protein [Feline imm (1150) 188 50.6 0.0012 gi|194666254|ref|XP_001787402.1| PREDICTED: simila (1303) 188 50.6 0.0013 gi|83722760|gb|ABC41654.1| pol protein [Feline imm (1135) 187 50.3 0.0014 gi|83722758|gb|ABC41653.1| pol protein [Feline imm (1135) 187 50.3 0.0014 gi|134284820|gb|ABO69507.1| pol [Feline immunodefi (1145) 187 50.3 0.0014 gi|134284813|gb|ABO69501.1| pol [Feline immunodefi (1145) 187 50.3 0.0014 gi|221118209|ref|XP_002156201.1| PREDICTED: simila ( 141) 176 47.3 0.0014 gi|323935|gb|AAB59937.1| pol polyprotein gi|96 ( 996) 186 50.1 0.0015 gi|56404359|sp|Q6CQN7.1|DUT_KLULA RecName: Full=De ( 148) 176 47.3 0.0015 gi|194666256|ref|XP_001787407.1| PREDICTED: simila (1798) 189 50.9 0.0015 >>gi|18676710|dbj|BAB85007.1| FLJ00254 protein [Homo sap (225 aa) initn: 1522 init1: 1522 opt: 1522 Z-score: 1839.0 bits: 347.5 E(): 9.9e-94 Smith-Waterman score: 1522; 100.000% identity (100.000% similar) in 225 aa overlap (1-225:1-225) 10 20 30 40 50 60 FLJ002 RNGLLKSQLKCQLGDNTLQGWGKVLQKAVCALNQHPIYGTLSPIATIHGSRNQGVEVQVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 RNGLLKSQLKCQLGDNTLQGWGKVLQKAVCALNQHPIYGTLSPIATIHGSRNQGVEVQVA 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 PLTITPSDPLAKFLLPLPATLRSAGLEVLVPEGGMLPPGDTTISLNWKLRLPTGHFGLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 PLTITPSDPLAKFLLPLPATLRSAGLEVLVPEGGMLPPGDTTISLNWKLRLPTGHFGLLL 70 80 90 100 110 120 130 140 150 160 170 180 FLJ002 PLSQQAKKGVAVLAGVIDLDYQDEISLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 PLSQQAKKGVAVLAGVIDLDYQDEISLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVNR 130 140 150 160 170 180 190 200 210 220 FLJ002 KLQQPNPGRTTNGSDPSGMTVWVTPPGKKHNLLRCLLKAKRIQNG ::::::::::::::::::::::::::::::::::::::::::::: gi|186 KLQQPNPGRTTNGSDPSGMTVWVTPPGKKHNLLRCLLKAKRIQNG 190 200 210 220 >>gi|149261035|ref|XP_001478138.1| PREDICTED: similar to (1129 aa) initn: 1039 init1: 569 opt: 1024 Z-score: 1228.9 bits: 236.9 E(): 9.5e-60 Smith-Waterman score: 1024; 73.206% identity (88.517% similar) in 209 aa overlap (2-209:883-1091) 10 20 30 FLJ002 RNGLLKSQLKCQLGDNTLQGWGKVLQKAVCA :::::..:. ::: :.:.:::.:::::: : gi|149 EVRQWAHDHGIHWSYHVPHHPEAAGLIERWNGLLKTHLQRQLGGNSLEGWGRVLQKAVYA 860 870 880 890 900 910 40 50 60 70 80 90 FLJ002 LNQHPIYGTLSPIATIHGSRNQGVEVQVAPLTITPSDPLAKFLLPLPATLRSAGLEVLVP :::. ::::.:::: :::::::::: ..::::::::::.:::::.: :: :::::::.: gi|149 LNQRSIYGTVSPIARIHGSRNQGVENGIVPLTITPSDPLGKFLLPVPITLGSAGLEVLAP 920 930 940 950 960 970 100 110 120 130 140 150 FLJ002 EGGMLPPGDTT-ISLNWKLRLPTGHFGLLLPLSQQAKKGVAVLAGVIDLDYQDEISLLLH : :.: :: :: :::::::::: ::::::.::.::::::..::.:::: ::. ::.: :: gi|149 ERGVLLPGATTNISLNWKLRLPPGHFGLLMPLNQQAKKGITVLGGVIDPDYHGEIGLPLH 980 990 1000 1010 1020 1030 160 170 180 190 200 210 FLJ002 NRSKKEYAWNTGDPLGRPLVLPCSVIKVNRKLQQPNPGRTTNGSDPSGMTVWVTPPGKKH : .:..:.:..:::::: ::::: ::::: :::::::.: :. .::::: :::.::::. gi|149 NGGKQDYVWSAGDPLGRLLVLPCPVIKVNGKLQQPNPSRMTKDADPSGMKVWVNPPGKEP 1040 1050 1060 1070 1080 1090 220 FLJ002 NLLRCLLKAKRIQNG gi|149 RPAEVLAEGEGNTEWVVEEGSYKYQLRPRNQLQKRGL 1100 1110 1120 >>gi|7522108|pir||T29097 pro-pol-dUTPase polyprotein - m (1182 aa) initn: 1026 init1: 562 opt: 1011 Z-score: 1212.9 bits: 234.0 E(): 7.4e-59 Smith-Waterman score: 1011; 72.727% identity (87.560% similar) in 209 aa overlap (2-209:936-1144) 10 20 30 FLJ002 RNGLLKSQLKCQLGDNTLQGWGKVLQKAVCA ::::: ::. ::: :.:.:::.:::::: : gi|752 EVRQWAHDHGIHWSYHVPHHPEAAGLIERWNGLLKMQLQHQLGGNSLEGWGRVLQKAVYA 910 920 930 940 950 960 40 50 60 70 80 90 FLJ002 LNQHPIYGTLSPIATIHGSRNQGVEVQVAPLTITPSDPLAKFLLPLPATLRSAGLEVLVP :::. ::::.:::: :::::::::: ..::::: ::::.:::::.: :: :::::::.: gi|752 LNQRSIYGTVSPIARIHGSRNQGVEKGIVPLTITHSDPLGKFLLPVPITLGSAGLEVLAP 970 980 990 1000 1010 1020 100 110 120 130 140 150 FLJ002 EGGMLPPGDTT-ISLNWKLRLPTGHFGLLLPLSQQAKKGVAVLAGVIDLDYQDEISLLLH :.:.: :: :: : :::::::: ::::::.::.::::::..::.:::: ::. ::.: :: gi|752 EAGVLLPGATTNIPLNWKLRLPPGHFGLLMPLNQQAKKGITVLGGVIDPDYHGEIGLSLH 1030 1040 1050 1060 1070 1080 160 170 180 190 200 210 FLJ002 NRSKKEYAWNTGDPLGRPLVLPCSVIKVNRKLQQPNPGRTTNGSDPSGMTVWVTPPGKKH : .:..:.:..:::::: ::::: ::::: :::::::.: :. .::::: :::.::::. gi|752 NGGKQHYVWSVGDPLGRLLVLPCPVIKVNGKLQQPNPSRMTKDADPSGMKVWVNPPGKEP 1090 1100 1110 1120 1130 1140 220 FLJ002 NLLRCLLKAKRIQNG gi|752 RPAEVLAEGEGNTEWVVEEGSYKYQLRLRNQLQKRGL 1150 1160 1170 1180 >>gi|34528257|dbj|BAC85476.1| unnamed protein product [H (134 aa) initn: 487 init1: 271 opt: 655 Z-score: 797.8 bits: 154.1 E(): 9.8e-36 Smith-Waterman score: 655; 77.778% identity (85.926% similar) in 135 aa overlap (64-197:2-134) 40 50 60 70 80 90 FLJ002 QHPIYGTLSPIATIHGSRNQGVEVQVAPLTITPSDPLAKFLLPLPATLRSAGLEVLVPEG .::::::::::::.:::: :::::::::.: gi|345 MVTPSDPLAKFLLPVPATLLSAGLEVLVPDG 10 20 30 100 110 120 130 140 150 FLJ002 GMLPPGDTT-ISLNWKLRLPTGHFGLLLPLSQQAKKGVAVLAGVIDLDYQDEISLLLHNR : ::::::: : :: ::::: :.:::::::::::::::.::::.:: :.::::: ::: gi|345 GRLPPGDTTTIPLNLKLRLPPGYFGLLLPLSQQAKKGVTVLAGMID--YHDEISLPLHNG 40 50 60 70 80 160 170 180 190 200 210 FLJ002 SKKEYAWNTGDPLGRPLVLPCSVIKVNRKLQQPNPGRTTNGSDPSGMTVWVTPPGKKHNL .:..:::::: :::. :::: ::: : :::: :::::::: : : gi|345 GKEDYAWNTGYPLGHLSVLPCPVIKGNGKLQQTNPGRTTNGPDSS 90 100 110 120 130 220 FLJ002 LRCLLKAKRIQNG >>gi|23484307|gb|EAA19685.1| RNase H, putative [Plasmodi (962 aa) initn: 405 init1: 405 opt: 405 Z-score: 484.2 bits: 98.9 E(): 2.9e-18 Smith-Waterman score: 405; 75.000% identity (86.905% similar) in 84 aa overlap (2-85:879-962) 10 20 30 FLJ002 RNGLLKSQLKCQLGDNTLQGWGKVLQKAVCA ::::: ::. ::: :.:.:::.:::::: : gi|234 EVRQWAHDHGIHWSYHVPHHPEAAGLIERWNGLLKMQLQHQLGGNSLEGWGRVLQKAVYA 850 860 870 880 890 900 40 50 60 70 80 90 FLJ002 LNQHPIYGTLSPIATIHGSRNQGVEVQVAPLTITPSDPLAKFLLPLPATLRSAGLEVLVP :::. ::::.:::: :::::::::: ..::::: ::::.:::::.: :: ::: gi|234 LNQRSIYGTVSPIARIHGSRNQGVEKGIVPLTITHSDPLGKFLLPVPITLGSAG 910 920 930 940 950 960 100 110 120 130 140 150 FLJ002 EGGMLPPGDTTISLNWKLRLPTGHFGLLLPLSQQAKKGVAVLAGVIDLDYQDEISLLLHN >>gi|74722930|sp|Q6ZN92.1|DUTL_HUMAN RecName: Full=Putat (141 aa) initn: 317 init1: 248 opt: 299 Z-score: 368.6 bits: 74.7 E(): 7.9e-12 Smith-Waterman score: 299; 42.969% identity (66.406% similar) in 128 aa overlap (92-217:11-138) 70 80 90 100 110 FLJ002 LTITPSDPLAKFLLPLPATLRSAGLEVLVPEGGMLPPGDTT--ISLNWKLRLPTGHFGLL .: .::::::: : ::: :. : :::::: gi|747 MPVIPALGEAKGEVLPPGDTTTIIPLNWMLKSPPGHFGLL 10 20 30 40 120 130 140 150 160 170 FLJ002 LPLSQQAKKGVAVLAGVIDLDYQDEISLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVN : ::::::.:: ::::: : .:::::::::::... . . : :: : .:. gi|747 LLLSQQAKNGVMVLAGVTDPEYQDEISLLLHNEGHLKEVKMEGARLGLPGRAESLEHQVQ 50 60 70 80 90 100 180 190 200 210 220 FLJ002 RKLQQPNPGRTTNGSDPSGMTVWVTPPGKKHNLLRCLLKAKRIQNG .:.. .. : . .: .. .. .... .:.. gi|747 SHLNMIAQSQRTFQKKDAGKAIILSKLTQEQKTKHCMFSLH 110 120 130 140 >>gi|114623961|ref|XP_001153492.1| PREDICTED: hypothetic (140 aa) initn: 289 init1: 250 opt: 294 Z-score: 362.6 bits: 73.6 E(): 1.7e-11 Smith-Waterman score: 294; 42.520% identity (66.142% similar) in 127 aa overlap (92-217:11-137) 70 80 90 100 110 120 FLJ002 LTITPSDPLAKFLLPLPATLRSAGLEVLVPEGGMLPPGDT-TISLNWKLRLPTGHFGLLL .: .:::::: :: ::: :. : ::::::: gi|114 MPVIPALGEAKGEVLPPGDTMTIPLNWMLKPPPGHFGLLL 10 20 30 40 130 140 150 160 170 180 FLJ002 PLSQQAKKGVAVLAGVIDLDYQDEISLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVNR ::::::.:: ::::: : .::::: :::::... . . : :: : .:. gi|114 LLSQQAKNGVMVLAGVTDPEYQDEIRLLLHNEGHLKEVKMEGARLGLPGRAESLEHQVQS 50 60 70 80 90 100 190 200 210 220 FLJ002 KLQQPNPGRTTNGSDPSGMTVWVTPPGKKHNLLRCLLKAKRIQNG .:.. .. : . .: .. .. .... .:.. gi|114 HLNMIAQSQRTFQKKDAGKAIILSKLTQEQKTKHCMFSLY 110 120 130 140 >>gi|119590193|gb|EAW69787.1| hCG1986656 [Homo sapiens] (214 aa) initn: 179 init1: 117 opt: 226 Z-score: 278.0 bits: 58.6 E(): 8.8e-07 Smith-Waterman score: 226; 29.444% identity (59.444% similar) in 180 aa overlap (2-173:41-214) 10 20 30 FLJ002 RNGLLKSQLKCQLGDNTLQGWGKVLQKAVCA :::::.::: ::.. :. :. : . : gi|119 AVQTFAAQHGIEWIFHIPCHPQAAGLIERMNGLLKKQLKV-LGQGKLKKWNDHLFEIVQI 20 30 40 50 60 40 50 60 70 80 FLJ002 LNQHPIYGTLSPIATIHGSRNQGVEVQVAPLTITPSDPLAKF--LLPLP--ATLRSAGLE ::..:. . .:. :. ...:.: . . : : . ::: .: .:.:. gi|119 LNNRPLTTSETPL-----SQMLILHLQIAKCAGVVHPLLLKCWKIHPLPWRSTRGAASLD 70 80 90 100 110 120 90 100 110 120 130 140 FLJ002 VLVPEGGMLPPGDT-TISLNWKLRL---PTGHFGLLLPLSQQAKKGVAVLAGVIDLDYQD . . :..: .: :.. . . . : :.: . : : .:..: .:. : ::. gi|119 LYSLKPGIIPAQSTYTVATGLGVIIGIIPCKHYGWITFQSGLAMRGITVHGGITDSDYRG 130 140 150 160 170 180 150 160 170 180 190 200 FLJ002 EISLLLHNRSKKEYAWNTGDPLGRPLVLPCSVIKVNRKLQQPNPGRTTNGSDPSGMTVWV :....:.: . .: . :... ::.:: gi|119 ELKVILYNTTPDSFAIKLQIPVAQLLVVPC 190 200 210 >>gi|159102716|gb|EDP41616.1| hypothetical protein MGL_3 (152 aa) initn: 145 init1: 77 opt: 196 Z-score: 244.0 bits: 51.8 E(): 6.8e-05 Smith-Waterman score: 196; 28.889% identity (62.222% similar) in 135 aa overlap (66-198:11-143) 40 50 60 70 80 90 FLJ002 PIYGTLSPIATIHGSRNQGVEVQVAPLTITPSDPLAKFLLPLPATLRSAGLEVLVPEGGM :. :::: :: .. ..:: .. . : . gi|159 MAMRLLVKRNPAYPLAK--LPTRGSAQAAGYDLYACEDAT 10 20 30 100 110 120 130 140 150 FLJ002 LPPGD-TTISLNWKLRLPTGHFGLLLPLSQQA-KKGVAVLAGVIDLDYQDEISLLLHNRS .: : :... . .. :: ::.: . : : : :.:. : :::.: ::. ....: : . gi|159 IPRGGRTVVQTGIHIALPEGHYGRVAPRSGLAVKHGIDVGAGVVDSDYRGLLGIVLFNFG 40 50 60 70 80 90 160 170 180 190 200 210 FLJ002 KKEYAWNTGDPLGRPLVLPCSVIKVNRKLQQPNPGRTTNGSDPSGMTVWVTPPGKKHNLL ... ...:: ... .. : .:.. . : ..: .: gi|159 TEDFQFHAGDRIAQLVIEKISNPEVEEVESLEATERGSGGFGSTGGFSSSTRPT 100 110 120 130 140 150 220 FLJ002 RCLLKAKRIQNG >>gi|47176919|gb|AAT12494.1| pol polyprotein [Feline imm (1124 aa) initn: 182 init1: 182 opt: 205 Z-score: 242.2 bits: 54.4 E(): 8.6e-05 Smith-Waterman score: 205; 32.787% identity (65.574% similar) in 122 aa overlap (84-203:726-847) 60 70 80 90 100 110 FLJ002 GVEVQVAPLTITPSDPLAKFLLPLPATLRSAGLEVLVPEGGMLPPGDT-TISLNWKLRLP :: ..:. . : ::.. .: . .: :: gi|471 GIPGNEEVDKLCQTMMIVEGDGILEKRAEDAGYDLLAAKEVHLLPGEVKVIPTGVRLMLP 700 710 720 730 740 750 120 130 140 150 160 170 FLJ002 TGHFGLLLPLSQQAKKGVAVLAGVIDLDYQDEISLLLHNRSKKEYAWNTGDPLGRPLVLP :::.::.: :....::. ::.:::: :. ::.... : :.: . . . ... ..:: gi|471 TGHWGLILGKSSMSSKGLDVLGGVIDEGYRGEIGVIMINLSRKSITLQEKQKVAQLIILP 760 770 780 790 800 810 180 190 200 210 220 FLJ002 CSVIKVNRKLQQPNPGRTTNGSDPSGM-TVWVTPPGKKHNLLRCLLKAKRIQNG :. .... : : .: .:. . :: gi|471 CKHENLEQGEIIMNSERGEKGYGSTGVFSSWVERIEEAEINHEKFHSDSQYLRTEFKLPR 820 830 840 850 860 870 gi|471 MVAEEIKRKCPLCRIRGEQVGGQLKIGPGIWQVDCTHFNNKIILVAIHVESGFLWAQIIP 880 890 900 910 920 930 225 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 02:02:53 2009 done: Sat Feb 28 02:07:51 2009 Total Scan time: 705.960 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]