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Product ID | ORK00371 |
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Accession No | D14695 |
Description | homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1, transcript variant 1 |
Clone name | ha00594 |
Vector information | |
cDNA sequence | DNA sequence (1860 bp) Predicted protein sequence (422 aa) |
HaloTag ORF Clone |
FHC00371
|
Flexi ORF Clone | FXC00371 |
Source | Myeloblast cell line (KG-1) |
Rouge ID |
mKIAA0025
by Kazusa Mouse cDNA Project
|
N-terminal truncation | Coding interruption | |
---|---|---|
cloned DNA seq | Warning | No warning |
Length of 3'UTR | 591 bp |
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Genome contig ID | gi51511732f_55423565 |
PolyA signal sequence (AATAAA,-27) |
+----*----+----*----+----*----+---- |
Flanking genome sequence (111731 - 111780) |
----+----*----+----*----+----*----+----*----+----* |
Ensembl ContigView (Add our DAS server as a DAS source)
Chr | f/r | start | end | exon | identity | class | |
---|---|---|---|---|---|---|---|
| 16 | f | 55523565 | 55535294 | 8 | 99.5 | Perfect prediction |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.Result of homology search against HUGE database (FASTA output, Multiple alignment)
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
HMMPfam | IPR000626 | 46 | 120 | PF00240 | Ubiquitin |
HMMSmart | IPR000626 | 41 | 118 | SM00213 | Ubiquitin |
ProfileScan | IPR000626 | 41 | 103 | PS50053 | Ubiquitin |
Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 316 | SSLSRFLMVMGATVVMYLHHVGW | 338 | PRIMARY | 23 |
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Panel name | Stanford G3 |
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Primer_f | GGCTTTGACAGGAATGGACT |
Primer_r | ATTTGTATCACGGCTTCACG |
PCR product length | 147 bp |
PCR conditions | 95 °C15 sec60 °C60 sec30 cycles |