Gene/Protein Characteristic Table for FLJ00343
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Product ID ORK03392
Accession No AK090427
Clone name sf00012s1
Vector information
cDNA sequence DNA sequence (8278 bp)
Predicted protein sequence (2651 aa)
Flexi ORF Clone FXC03392
Source Human spleen
Rouge ID mFLJ00343 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 8278 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Features of the protein sequence
Description

Length: 2651 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAC03408 0 100.0 FLJ00343 protei...
 Homo sapiens
CAI43199 0 100.0 filamin A, alph...
 Homo sapiens
BAG72555 0 100.0 filamin A alpha...
 synthetic construct
P21333 0 99.7 Filamin-A; Alph...
 Homo sapiens
CAA37495 0 99.6 unnamed protein...
 Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AK074048 0 99.9 FLJ00119
AB008567 3.3e-16 32.0 KIAA0302
AB011089 0.00037 24.7 KIAA0517
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001715 56 161 PF00307 Calponin-like actin-binding
IPR001715 179 281 PF00307 Calponin-like actin-binding
IPR001298 292 383 PF00630 Filamin/ABP280 repeat
IPR001298 392 483 PF00630 Filamin/ABP280 repeat
IPR001298 491 579 PF00630 Filamin/ABP280 repeat
IPR001298 587 672 PF00630 Filamin/ABP280 repeat
IPR001298 683 772 PF00630 Filamin/ABP280 repeat
IPR001298 780 875 PF00630 Filamin/ABP280 repeat
IPR001298 883 974 PF00630 Filamin/ABP280 repeat
IPR001298 982 1070 PF00630 Filamin/ABP280 repeat
IPR001298 1078 1163 PF00630 Filamin/ABP280 repeat
IPR001298 1171 1258 PF00630 Filamin/ABP280 repeat
IPR001298 1266 1358 PF00630 Filamin/ABP280 repeat
IPR001298 1366 1451 PF00630 Filamin/ABP280 repeat
IPR001298 1459 1548 PF00630 Filamin/ABP280 repeat
IPR001298 1556 1645 PF00630 Filamin/ABP280 repeat
IPR001298 1653 1741 PF00630 Filamin/ABP280 repeat
IPR001298 1781 1861 PF00630 Filamin/ABP280 repeat
IPR001298 1868 1953 PF00630 Filamin/ABP280 repeat
IPR001298 1960 2040 PF00630 Filamin/ABP280 repeat
IPR001298 2050 2135 PF00630 Filamin/ABP280 repeat
IPR001298 2162 2231 PF00630 Filamin/ABP280 repeat
IPR001298 2241 2326 PF00630 Filamin/ABP280 repeat
IPR001298 2343 2421 PF00630 Filamin/ABP280 repeat
IPR001298 2432 2517 PF00630 Filamin/ABP280 repeat
IPR001298 2560 2647 PF00630 Filamin/ABP280 repeat
HMMSmart IPR001715 57 159 SM00033 Calponin-like actin-binding
IPR001715 180 276 SM00033 Calponin-like actin-binding
IPR001298 292 389 SM00557 Filamin/ABP280 repeat
IPR001298 392 489 SM00557 Filamin/ABP280 repeat
IPR001298 491 585 SM00557 Filamin/ABP280 repeat
IPR001298 587 678 SM00557 Filamin/ABP280 repeat
IPR001298 683 778 SM00557 Filamin/ABP280 repeat
IPR001298 780 881 SM00557 Filamin/ABP280 repeat
IPR001298 883 980 SM00557 Filamin/ABP280 repeat
IPR001298 982 1076 SM00557 Filamin/ABP280 repeat
IPR001298 1078 1169 SM00557 Filamin/ABP280 repeat
IPR001298 1171 1264 SM00557 Filamin/ABP280 repeat
IPR001298 1266 1364 SM00557 Filamin/ABP280 repeat
IPR001298 1366 1457 SM00557 Filamin/ABP280 repeat
IPR001298 1459 1554 SM00557 Filamin/ABP280 repeat
IPR001298 1556 1651 SM00557 Filamin/ABP280 repeat
IPR001298 1653 1747 SM00557 Filamin/ABP280 repeat
IPR001298 1762 1867 SM00557 Filamin/ABP280 repeat
IPR001298 1868 1959 SM00557 Filamin/ABP280 repeat
IPR001298 1960 2046 SM00557 Filamin/ABP280 repeat
IPR001298 2050 2141 SM00557 Filamin/ABP280 repeat
IPR001298 2154 2237 SM00557 Filamin/ABP280 repeat
IPR001298 2241 2332 SM00557 Filamin/ABP280 repeat
IPR001298 2335 2427 SM00557 Filamin/ABP280 repeat
IPR001298 2432 2523 SM00557 Filamin/ABP280 repeat
IPR001298 2560 2651 SM00557 Filamin/ABP280 repeat
ProfileScan IPR001715 55 161 PS50021 Calponin-like actin-binding
IPR001715 178 278 PS50021 Calponin-like actin-binding
IPR001298 288 386 PS50194 Filamin/ABP280 repeat
IPR001298 388 486 PS50194 Filamin/ABP280 repeat
IPR001298 487 582 PS50194 Filamin/ABP280 repeat
IPR001298 583 675 PS50194 Filamin/ABP280 repeat
IPR001298 679 775 PS50194 Filamin/ABP280 repeat
IPR001298 776 878 PS50194 Filamin/ABP280 repeat
IPR001298 879 977 PS50194 Filamin/ABP280 repeat
IPR001298 978 1073 PS50194 Filamin/ABP280 repeat
IPR001298 1074 1166 PS50194 Filamin/ABP280 repeat
IPR001298 1167 1261 PS50194 Filamin/ABP280 repeat
IPR001298 1262 1361 PS50194 Filamin/ABP280 repeat
IPR001298 1362 1454 PS50194 Filamin/ABP280 repeat
IPR001298 1455 1551 PS50194 Filamin/ABP280 repeat
IPR001298 1552 1648 PS50194 Filamin/ABP280 repeat
IPR001298 1649 1744 PS50194 Filamin/ABP280 repeat
IPR001298 1783 1864 PS50194 Filamin/ABP280 repeat
IPR001298 1864 1956 PS50194 Filamin/ABP280 repeat
IPR001298 1954 2043 PS50194 Filamin/ABP280 repeat
IPR001298 2046 2138 PS50194 Filamin/ABP280 repeat
IPR001298 2136 2234 PS50194 Filamin/ABP280 repeat
IPR001298 2237 2329 PS50194 Filamin/ABP280 repeat
IPR001298 2331 2424 PS50194 Filamin/ABP280 repeat
IPR001298 2428 2520 PS50194 Filamin/ABP280 repeat
IPR001298 2556 2650 PS50194 Filamin/ABP280 repeat
ScanRegExp IPR001589 57 66 PS00019 Actin-binding
IPR001589 133 157 PS00020 Actin-binding
Experimental conditions
Primer_f
Primer_r
PCR conditions test
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