Comparison between the cloned and the revised DNA sequences

Cloned DNA sequence, length = 6543 bp
Revised DNA sequence, length = 3740 bp

<< Positions of primers used in RT-PCR experiment(s) >>

 1 : f NN03802  1355 -  1375     CTG CTA TAA TGT CTG GAC GAG
     r NN04454  4727 -  4707     CCA CAT CTG AGC AAA CCA CAC
<< Positions of inserion/deletion/mutation(s) in the aligned sequence >>
 1 :  1487 -  2409      923-bp deletion  (in the revised sequence)
 2 :  2611 -  4490     1880-bp deletion  (in the revised sequence)
Predicted coding region: colored in green ( 67 - 3240 in the revised sequence).


*- Clone Name -*      1          .         .         .         .         . 50
hg03949               1 CGCTGGGATGGCCGCCACAGCTGTAGGTGCTGCTAGTGTTTAGCGCTGGT 50
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)      1 CGCTGGGATGGCCGCCACAGCTGTAGGTGCTGCTAGTGTTTAGCGCTGGT 50

                     51          .         .         .         .         . 100
hg03949              51 CTTTGCCGGGCGTTGAGGGCAGCTCAGCCTCCTTGTTTGTCCGGTTCGCC 100
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)     51 CTTTGCCGGGCGTTGAGGGCAGCTCAGCCTCCTTGTTTGTCCGGTTCGCC 100

                    101          .         .         .         .         . 150
hg03949             101 TGTGCGTGGTACTCAAGGGCACCAGTATTCCCGCGGTCGGCAGCATGGGT 150
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    101 TGTGCGTGGTACTCAAGGGCACCAGTATTCCCGCGGTCGGCAGCATGGGT 150

                    151          .         .         .         .         . 200
hg03949             151 CGGGAGTCACGCCACTATCGAAAACGATCGGCATCCCGGGGTCGCTCTGG 200
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    151 CGGGAGTCACGCCACTATCGAAAACGATCGGCATCCCGGGGTCGCTCTGG 200

                    201          .         .         .         .         . 250
hg03949             201 AAGTCGGTCTAGAAGTCGCTCACCCTCAGACAAAAGAAGTAAACGTGGAG 250
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    201 AAGTCGGTCTAGAAGTCGCTCACCCTCAGACAAAAGAAGTAAACGTGGAG 250

                    251          .         .         .         .         . 300
hg03949             251 ATGACAGACGGTCTAGAAGTAGAGATAGAGATAGGAGGAGAGAGAGGTCT 300
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    251 ATGACAGACGGTCTAGAAGTAGAGATAGAGATAGGAGGAGAGAGAGGTCT 300

                    301          .         .         .         .         . 350
hg03949             301 CGTAGCAGGGATAAAAGAAGATCTCGGTCAAGGGACAGGAAGCGTCTGAG 350
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    301 CGTAGCAGGGATAAAAGAAGATCTCGGTCAAGGGACAGGAAGCGTCTGAG 350

                    351          .         .         .         .         . 400
hg03949             351 ACGTTCCAGAAGTAGAGAGAGAGACAGAAGCCGAGAGCGAAGAAGATCTC 400
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    351 ACGTTCCAGAAGTAGAGAGAGAGACAGAAGCCGAGAGCGAAGAAGATCTC 400

                    401          .         .         .         .         . 450
hg03949             401 GAAGTAGAGACAGGAGACGCTCAAGGAGTAGAAGCCGGGGCCGGCGATCC 450
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    401 GAAGTAGAGACAGGAGACGCTCAAGGAGTAGAAGCCGGGGCCGGCGATCC 450

                    451          .         .         .         .         . 500
hg03949             451 CGATCCTCCAGTCCTGGAAATAAAAGCAAGAAAACTGAGAATAGATCTAG 500
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    451 CGATCCTCCAGTCCTGGAAATAAAAGCAAGAAAACTGAGAATAGATCTAG 500

                    501          .         .         .         .         . 550
hg03949             501 GTCCAAAGAGAAAACTGATGGTGGGGAAAGTTCTAAAGAGAAGAAAAAAG 550
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    501 GTCCAAAGAGAAAACTGATGGTGGGGAAAGTTCTAAAGAGAAGAAAAAAG 550

                    551          .         .         .         .         . 600
hg03949             551 ACAAAGATGACAAGGAGGATGAAAAAGAAAAAGATGCTGGCAACTTTGAC 600
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    551 ACAAAGATGACAAGGAGGATGAAAAAGAAAAAGATGCTGGCAACTTTGAC 600

                    601          .         .         .         .         . 650
hg03949             601 CAGAATAAGCTGGAAGAAGAAATGAGAAAGCGAAAAGAAAGAGTAGAAAA 650
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    601 CAGAATAAGCTGGAAGAAGAAATGAGAAAGCGAAAAGAAAGAGTAGAAAA 650

                    651          .         .         .         .         . 700
hg03949             651 ATGGCGAGAAGAGCAACGTAAAAAGGCTATGGAAAACATAGGAGAACTGA 700
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    651 ATGGCGAGAAGAGCAACGTAAAAAGGCTATGGAAAACATAGGAGAACTGA 700

                    701          .         .         .         .         . 750
hg03949             701 AAAAGGAAATCGAAGAGATGAAACAAGGGAAAAAGTGGAGTTTAGAGGAC 750
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    701 AAAAGGAAATCGAAGAGATGAAACAAGGGAAAAAGTGGAGTTTAGAGGAC 750

                    751          .         .         .         .         . 800
hg03949             751 GATGATGATGACGAAGATGATCCTGCAGAAGCTGAAAAGGAGGGAAATGA 800
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    751 GATGATGATGACGAAGATGATCCTGCAGAAGCTGAAAAGGAGGGAAATGA 800

                    801          .         .         .         .         . 850
hg03949             801 AATGGAGGGTGAGGAGTTAGATCCATTAGATGCTTACATGGAAGAAGTGA 850
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    801 AATGGAGGGTGAGGAGTTAGATCCATTAGATGCTTACATGGAAGAAGTGA 850

                    851          .         .         .         .         . 900
hg03949             851 AAGAGGAAGTAAAAAAATTTAACATGAGAAGTGTAAAAGGTGGTGGGGGA 900
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    851 AAGAGGAAGTAAAAAAATTTAACATGAGAAGTGTAAAAGGTGGTGGGGGA 900

                    901          .         .         .         .         . 950
hg03949             901 AATGAAAAGAAGTCTGGGCCAACGGTCACAAAAGTTGTCACTGTTGTGAC 950
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    901 AATGAAAAGAAGTCTGGGCCAACGGTCACAAAAGTTGTCACTGTTGTGAC 950

                    951          .         .         .         .         . 1000
hg03949             951 AACCAAAAAAGCAGTTGTGGATTCTGATAAGAAGAAAGGTGAGCTGATGG 1000
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)    951 AACCAAAAAAGCAGTTGTGGATTCTGATAAGAAGAAAGGTGAGCTGATGG 1000

                   1001          .         .         .         .         . 1050
hg03949            1001 AGAATGACCAGGATGCCATGGAGTATTCTTCAGAGGAGGAAGAAGTTGAT 1050
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1001 AGAATGACCAGGATGCCATGGAGTATTCTTCAGAGGAGGAAGAAGTTGAT 1050

                   1051          .         .         .         .         . 1100
hg03949            1051 CTTCAGACAGCCCTTACAGGGTATCAAACAAAACAGCGAAAGCTTCTAGA 1100
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1051 CTTCAGACAGCCCTTACAGGGTATCAAACAAAACAGCGAAAGCTTCTAGA 1100

                   1101          .         .         .         .         . 1150
hg03949            1101 ACCAGTTGATCATGGAAAAATTGAGTATGAGCCATTTAGGAAAAACTTCT 1150
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1101 ACCAGTTGATCATGGAAAAATTGAGTATGAGCCATTTAGGAAAAACTTCT 1150

                   1151          .         .         .         .         . 1200
hg03949            1151 ATGTTGAAGTTCCAGAACTAGCAAAAATGTCTCAAGAAGAGGTAAATGTG 1200
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1151 ATGTTGAAGTTCCAGAACTAGCAAAAATGTCTCAAGAAGAGGTAAATGTG 1200

                   1201          .         .         .         .         . 1250
hg03949            1201 TTTCGATTGGAAATGGAGGGCATTACAGTTAAAGGAAAAGGTTGCCCCAA 1250
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1201 TTTCGATTGGAAATGGAGGGCATTACAGTTAAAGGAAAAGGTTGCCCCAA 1250

                   1251          .         .         .         .         . 1300
hg03949            1251 ACCAATTAAATCCTGGGTCCAGTGTGGAATTTCCATGAAGATCTTAAATT 1300
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1251 ACCAATTAAATCCTGGGTCCAGTGTGGAATTTCCATGAAGATCTTAAATT 1300

                   1301          .         .         .         .         . 1350
hg03949            1301 CCCTCAAGAAGCATGGCTATGAAAAGCCCACGCCCATCCAAACCCAAGCT 1350
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1301 CCCTCAAGAAGCATGGCTATGAAAAGCCCACGCCCATCCAAACCCAAGCT 1350

                   1351          .         .         .         .         . 1400
hg03949            1351 ATTCCTGCTATAATGTCTGGACGAGATTTGATTGGCATTGCCAAAACAGG 1400
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1351 ATTCCTGCTATAATGTCTGGACGAGATTTGATTGGCATTGCCAAAACAGG 1400

                   1401          .         .         .         .         . 1450
hg03949            1401 AAGTGGAAAGACCATTGCTTTTCTGTTGCCCATGTTTAGACACATCATGG 1450
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1401 AAGTGGAAAGACCATTGCTTTTCTGTTGCCCATGTTTAGACACATCATGG 1450

                   1451          .         .         .         .         . 1500
hg03949            1451 ATCAGAGGTCATTAGAGGAAGGAGAGGGGCCAATAGGTACAATTCTTTTC 1500
                        ||||||||||||||||||||||||||||||||||||              
hg03949(revised)   1451 ATCAGAGGTCATTAGAGGAAGGAGAGGGGCCAATAG-------------- 1486

                   1501          .         .         .         .         . 1550
hg03949            1501 ATTAAACTATTTTTCAAATAACAGCTTTGTTGTCAAACAGAAAGACCTTA 1550
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   1551          .         .         .         .         . 1600
hg03949            1551 TAGTTTATAATGTTCTTAATTATGACAATGAAGTTGTCTTTATGTACATT 1600
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   1601          .         .         .         .         . 1650
hg03949            1601 TTCTTTATCAATTTGGCACTTTGGGGCTGATTTCCCCTTACCAGCAGGTG 1650
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   1651          .         .         .         .         . 1700
hg03949            1651 GAGTGAGAATCTTCAGAGCTCTGGAGTGACATCTCAGAAGTACAAAAACA 1700
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   1701          .         .         .         .         . 1750
hg03949            1701 GCCTCTCCTGGCACAGCTCAGTTTTTAAACTCTGACTTGGCAGGTAGACT 1750
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   1751          .         .         .         .         . 1800
hg03949            1751 CCTCGTGCATCTATCTGTTTATTTATATTGAGGTTTGTTAGCCCAGTATC 1800
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   1801          .         .         .         .         . 1850
hg03949            1801 AGTGGATATATAAAAGCGACATGGAAGATATCCTAGGGAAACATATTTTC 1850
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   1851          .         .         .         .         . 1900
hg03949            1851 CTAGGTAGTTTTTGGCCTTAACAGGCTATAATGCCAGCATTTCATTCAAG 1900
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   1901          .         .         .         .         . 1950
hg03949            1901 ATTACTTGTTTAGATTCTGGTTTCTTGATTCATCTTGGCAGAGATAACTC 1950
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   1951          .         .         .         .         . 2000
hg03949            1951 TTGGAAAGTTGAGTAGGGTTTTGGAAAGTTGTTCAGCTTCTCTCTTAGGA 2000
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   2001          .         .         .         .         . 2050
hg03949            2001 ACACGGGGCATAGTATATCTCTCCTCTGTCTGTGCCCCTCAGACCAAGGT 2050
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   2051          .         .         .         .         . 2100
hg03949            2051 TGTTTCTGGAAGCAGCAGTATGGCTTCTGTGGCACAGTGAGTCACTTGAT 2100
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   2101          .         .         .         .         . 2150
hg03949            2101 TTTCTTTGTTCTGTGATTTGCATTAGAAAACTGTTTGCATTCTTTTGAAC 2150
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   2151          .         .         .         .         . 2200
hg03949            2151 CAAGTATTTTCCTGAGGGTTGGATGAGGCATTTAACTGTCATTTATCTTC 2200
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   2201          .         .         .         .         . 2250
hg03949            2201 TTTTAGCATGTTTTTAAAAATCTGCTTATATTTATCCTTCCCCACAACCT 2250
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   2251          .         .         .         .         . 2300
hg03949            2251 CTGCTGTTATACAACTTTTGAAATAGTTTTCAGGGATGCATAACAAAACA 2300
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   2301          .         .         .         .         . 2350
hg03949            2301 AAAATTAGGTGAAACAATCTGAACTTTATTGTAAAGGTTAAATTGAACAC 2350
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   2351          .         .         .         .         . 2400
hg03949            2351 TATAAAGCACAGCCTTAAGAATTTTGGTGGTTAGGCTACTGATGTATTTA 2400
                                                                          
hg03949(revised)   1487 -------------------------------------------------- 1487

                   2401          .         .         .         .         . 2450
hg03949            2401 TCTTTCCAGCTGTCATCATGACTCCAACTCGAGAACTGGCTTTACAGATT 2450
                                 |||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1487 ---------CTGTCATCATGACTCCAACTCGAGAACTGGCTTTACAGATT 1527

                   2451          .         .         .         .         . 2500
hg03949            2451 ACTAAAGAGTGTAAGAAGTTTTCCAAGACTTTGGGACTTAGAGTGGTCTG 2500
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1528 ACTAAAGAGTGTAAGAAGTTTTCCAAGACTTTGGGACTTAGAGTGGTCTG 1577

                   2501          .         .         .         .         . 2550
hg03949            2501 TGTTTACGGAGGAACAGGAATCAGTGAGCAGATTGCTGAGCTGAAAAGAG 2550
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1578 TGTTTACGGAGGAACAGGAATCAGTGAGCAGATTGCTGAGCTGAAAAGAG 1627

                   2551          .         .         .         .         . 2600
hg03949            2551 GTGCTGAAATTATTGTTTGCACACCTGGTCGAATGATTGACATGTTAGCC 2600
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1628 GTGCTGAAATTATTGTTTGCACACCTGGTCGAATGATTGACATGTTAGCC 1677

                   2601          .         .         .         .         . 2650
hg03949            2601 GCTAACAGTGGTAAGTCAGGGGTATTTTTTTGGTGTCTTTTATTTTTGAA 2650
                        ||||||||||                                        
hg03949(revised)   1678 GCTAACAGTG---------------------------------------- 1687

                   2651          .         .         .         .         . 2700
hg03949            2651 TTCTTTACTTTTTTTTTGTTAAAACAGATGCAAGAAACCAACAAAGGGTT 2700
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   2701          .         .         .         .         . 2750
hg03949            2701 TCTATATTTCTTCTTGAAGCTGCAGTATCTTAAAATTTGTAGCCTGTGGT 2750
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   2751          .         .         .         .         . 2800
hg03949            2751 CCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAGCTTGGGCCCGGGAGGC 2800
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   2801          .         .         .         .         . 2850
hg03949            2801 GGAGCTTGCAGTGAGCCAAGATCGCACCACTGTACTCCAGCCTGGGTGAC 2850
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   2851          .         .         .         .         . 2900
hg03949            2851 AGAGTAAGACTCCGTCTCAAAAAAAAAAAATAATAATTGTAACAAGTTGA 2900
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   2901          .         .         .         .         . 2950
hg03949            2901 TTATTACAAGCATTAATGATATTTTTGCAATTTAAAATTTTTTTTTCAGA 2950
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   2951          .         .         .         .         . 3000
hg03949            2951 AGTAACTCCATCTGATCATAACTTGGATTCTTAATCCAGTTTTGGCCTGG 3000
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3001          .         .         .         .         . 3050
hg03949            3001 CTTTGCTTAGTAAAAGAGTGGGGTAGTAGCTTTTTCTTTATTACAAAATT 3050
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3051          .         .         .         .         . 3100
hg03949            3051 TAGACTTTTTCTCCACATGAGCTAGTATTTTCTTAGATACTACATAAATT 3100
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3101          .         .         .         .         . 3150
hg03949            3101 AAGATATTGCAGCTTCAAGAAATTTTATCTTTTGTAAATATTGCATGTTT 3150
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3151          .         .         .         .         . 3200
hg03949            3151 GTAGCTCAAATGTTATGCTTTGTTAAATTATTCCCTATCAAAACTCTTAC 3200
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3201          .         .         .         .         . 3250
hg03949            3201 TAAACTGTTGACATTATTTAACTTCTGTGGAGAAAGGCCCTTCAAGATTT 3250
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3251          .         .         .         .         . 3300
hg03949            3251 ATAGAACTGGGCTTCCGAGACTTAAACCATCAAAGGTAGGTAATTTAATG 3300
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3301          .         .         .         .         . 3350
hg03949            3301 CTGTTCCCGACCTTGCAAAACTAATTGGGGCTACAAATGCTAGTGTGGAA 3350
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3351          .         .         .         .         . 3400
hg03949            3351 TACTTAAATATTAGATAGCACTTATTTTGGCACTTTTTATTTTTTGAAGA 3400
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3401          .         .         .         .         . 3450
hg03949            3401 AAATGCTCTCAGAGGTTTCCATTGCAATATTTAGTGTGTACATAATAGAG 3450
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3451          .         .         .         .         . 3500
hg03949            3451 TATTAAAAACTGAGTTAGTGCATGTTTCTAGTAGTATTCTGCTTGAATTT 3500
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3501          .         .         .         .         . 3550
hg03949            3501 CTAATTCTAATTGTACATGAAGTTGGCAAAGTGACATCGAAATTGAGAAG 3550
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3551          .         .         .         .         . 3600
hg03949            3551 TCATTGTGCTTGTCTAGCATATGGAAAGTTTTGGTTTGAATGCTGATTAA 3600
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3601          .         .         .         .         . 3650
hg03949            3601 ATAATCCCTTTTTTTTTTTCTCAATGCTGCATTGATTAAGTCTCCTCCTG 3650
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3651          .         .         .         .         . 3700
hg03949            3651 AAATTCATCTTGATTAATTTTACCTTTTTCTCTTATCTGTCATTGTGGTC 3700
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3701          .         .         .         .         . 3750
hg03949            3701 TATTTTTAAATAACTATTTTATACGTGTTTTTGCCAGGTGATTGATTCAA 3750
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3751          .         .         .         .         . 3800
hg03949            3751 CAGTTGATAGCAATGCTTCTGTTAATATTTTAGAAGGAATTTCCTATGTA 3800
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3801          .         .         .         .         . 3850
hg03949            3801 TGTATTTTGTTTTCACTGGTTAGGAAGCCAGTTGCATTTATTTAAGTCAG 3850
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3851          .         .         .         .         . 3900
hg03949            3851 TGGGTTCACTTAATAAAATTGGGATTTATATCTTTGTATGGAAAATGTAT 3900
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3901          .         .         .         .         . 3950
hg03949            3901 TTATGTAATGTGTTTTGGTATTTAAAGTTTTTGTGTGATACTTTAATTTC 3950
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   3951          .         .         .         .         . 4000
hg03949            3951 CTAATGCTGTCAAATAGCTTCTCATTAAGGGTTTGACATGCCCATTTAAG 4000
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   4001          .         .         .         .         . 4050
hg03949            4001 AAGCTTCTAAATATATGGAAGTAGGTTATAAAATAATATAGAGAGACATT 4050
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   4051          .         .         .         .         . 4100
hg03949            4051 TTCTGTGTCTAAAATAGTTAGCACTAGAACTTGCTTTCCACACATACGCT 4100
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   4101          .         .         .         .         . 4150
hg03949            4101 GTAATCTCTAATATGTTTTTTTCTAGGTGATGCTGTCAGATAATGGCTGA 4150
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   4151          .         .         .         .         . 4200
hg03949            4151 TGTGGCTCGATGCTTCATCTCAGTCTTAGTTTTATGATGTGTTTTGGAGA 4200
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   4201          .         .         .         .         . 4250
hg03949            4201 GGGCTGTTTTCTGAATTTTACAGGTTCTTCAGGCCCTATGATGGTATGCA 4250
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   4251          .         .         .         .         . 4300
hg03949            4251 AGAGACGAGTTTGACAAAATAAAGGGCCTCATATACCCATTGTCAGAAAG 4300
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   4301          .         .         .         .         . 4350
hg03949            4301 TATTTGCCACTAGATTAAGACATTGTAGATCAAAATTTCTTTTCACTTTT 4350
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   4351          .         .         .         .         . 4400
hg03949            4351 TAAAGATACCTAACTTACCCCTCTGGTTAAGTCAGGCATTTTAGTTTCCT 4400
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   4401          .         .         .         .         . 4450
hg03949            4401 TTACAGTTTTTAAAAGTTCTTGGTAGCCATAAAATGAATTGTGACTGATT 4450
                                                                          
hg03949(revised)   1688 -------------------------------------------------- 1688

                   4451          .         .         .         .         . 4500
hg03949            4451 TTTAGTTTTCTTTTTGTCTTTATTTTTCTTTTCATCTTAGGTCGGGTCAC 4500
                                                                ||||||||||
hg03949(revised)   1688 ----------------------------------------GTCGGGTCAC 1697

                   4501          .         .         .         .         . 4550
hg03949            4501 AAATCTTCGAAGAGTGACATATGTTGTTTTAGATGAAGCAGACAGAATGT 4550
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1698 AAATCTTCGAAGAGTGACATATGTTGTTTTAGATGAAGCAGACAGAATGT 1747

                   4551          .         .         .         .         . 4600
hg03949            4551 TTGACATGGGTTTTGAACCCCAGGTCATGCGCATCGTGGATAATGTTCGT 4600
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1748 TTGACATGGGTTTTGAACCCCAGGTCATGCGCATCGTGGATAATGTTCGT 1797

                   4601          .         .         .         .         . 4650
hg03949            4601 CCTGATCGACAGACGGTTATGTTTTCAGCTACTTTCCCCAGAGCTATGGA 4650
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1798 CCTGATCGACAGACGGTTATGTTTTCAGCTACTTTCCCCAGAGCTATGGA 1847

                   4651          .         .         .         .         . 4700
hg03949            4651 GGCTTTGGCTCGCAGGATCCTCAGTAAACCTATTGAAGTACAAGTTGGAG 4700
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1848 GGCTTTGGCTCGCAGGATCCTCAGTAAACCTATTGAAGTACAAGTTGGAG 1897

                   4701          .         .         .         .         . 4750
hg03949            4701 GCAGGAGTGTGGTTTGCTCAGATGTGGAGCAACAAGTGATTGTGATTGAA 4750
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1898 GCAGGAGTGTGGTTTGCTCAGATGTGGAGCAACAAGTGATTGTGATTGAA 1947

                   4751          .         .         .         .         . 4800
hg03949            4751 GAAGAAAAGAAATTCTTGAAGTTACTTGAGCTTCTAGGCCATTATCAAGA 4800
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1948 GAAGAAAAGAAATTCTTGAAGTTACTTGAGCTTCTAGGCCATTATCAAGA 1997

                   4801          .         .         .         .         . 4850
hg03949            4801 GTCAGGATCTGTCATTATATTTGTGGATAAGCAGGAACATGCTGATGGTC 4850
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   1998 GTCAGGATCTGTCATTATATTTGTGGATAAGCAGGAACATGCTGATGGTC 2047

                   4851          .         .         .         .         . 4900
hg03949            4851 TTCTTAAGGATTTAATGAGAGCATCTTATCCTTGCATGTCTCTTCATGGA 4900
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2048 TTCTTAAGGATTTAATGAGAGCATCTTATCCTTGCATGTCTCTTCATGGA 2097

                   4901          .         .         .         .         . 4950
hg03949            4901 GGCATTGATCAATATGACAGAGATAGCATCATAAATGACTTTAAGAATGG 4950
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2098 GGCATTGATCAATATGACAGAGATAGCATCATAAATGACTTTAAGAATGG 2147

                   4951          .         .         .         .         . 5000
hg03949            4951 GACCTGCAAACTTCTTGTGGCTACCTCTGTTGCTGCCCGAGGTCTAGATG 5000
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2148 GACCTGCAAACTTCTTGTGGCTACCTCTGTTGCTGCCCGAGGTCTAGATG 2197

                   5001          .         .         .         .         . 5050
hg03949            5001 TGAAACATCTGATTCTTGTAGTAAATTATAGCTGCCCCAACCATTATGAG 5050
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2198 TGAAACATCTGATTCTTGTAGTAAATTATAGCTGCCCCAACCATTATGAG 2247

                   5051          .         .         .         .         . 5100
hg03949            5051 GATTATGTACACAGAGCAGGGCGGACTGGAAGAGCAGGAAACAAGGGTTA 5100
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2248 GATTATGTACACAGAGCAGGGCGGACTGGAAGAGCAGGAAACAAGGGTTA 2297

                   5101          .         .         .         .         . 5150
hg03949            5101 TGCTTATACTTTTATCACAGAGGATCAAGCTCGCTATGCTGGTGACATAA 5150
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2298 TGCTTATACTTTTATCACAGAGGATCAAGCTCGCTATGCTGGTGACATAA 2347

                   5151          .         .         .         .         . 5200
hg03949            5151 TTAAAGCTCTTGAATTGTCAGGGACTGCAGTACCTCCTGATTTAGAGAAA 5200
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2348 TTAAAGCTCTTGAATTGTCAGGGACTGCAGTACCTCCTGATTTAGAGAAA 2397

                   5201          .         .         .         .         . 5250
hg03949            5201 CTGTGGAGTGATTTCAAAGATCAGCAGAAAGCTGAGGGGAAAATAATTAA 5250
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2398 CTGTGGAGTGATTTCAAAGATCAGCAGAAAGCTGAGGGGAAAATAATTAA 2447

                   5251          .         .         .         .         . 5300
hg03949            5251 AAAGAGTAGTGGGTTCTCTGGTAAGGGATTCAAGTTTGATGAAACAGAAC 5300
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2448 AAAGAGTAGTGGGTTCTCTGGTAAGGGATTCAAGTTTGATGAAACAGAAC 2497

                   5301          .         .         .         .         . 5350
hg03949            5301 AAGCTTTGGCTAATGAGAGGAAGAAGTTACAAAAAGCAGCTCTTGGTCTA 5350
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2498 AAGCTTTGGCTAATGAGAGGAAGAAGTTACAAAAAGCAGCTCTTGGTCTA 2547

                   5351          .         .         .         .         . 5400
hg03949            5351 CAAGATTCAGATGATGAGGATGCTGCAGTTGATATTGATGAGCAAATTGA 5400
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2548 CAAGATTCAGATGATGAGGATGCTGCAGTTGATATTGATGAGCAAATTGA 2597

                   5401          .         .         .         .         . 5450
hg03949            5401 AAGCATGTTTAATTCAAAGAAGAGAGTAAAGGATATGGCTGCTCCTGGAA 5450
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2598 AAGCATGTTTAATTCAAAGAAGAGAGTAAAGGATATGGCTGCTCCTGGAA 2647

                   5451          .         .         .         .         . 5500
hg03949            5451 CATCAAGTGTTCCTGCTCCAACTGCAGGAAATGCTGAGAAATTAGAAATT 5500
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2648 CATCAAGTGTTCCTGCTCCAACTGCAGGAAATGCTGAGAAATTAGAAATT 2697

                   5501          .         .         .         .         . 5550
hg03949            5501 GCTAAGAGATTGGCTCTTAGAATCAATGCCCAGAAGAATTTGGGCATCGA 5550
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2698 GCTAAGAGATTGGCTCTTAGAATCAATGCCCAGAAGAATTTGGGCATCGA 2747

                   5551          .         .         .         .         . 5600
hg03949            5551 GTCTCAGGTAGATGTGATGCAGCAGGCCACCAATGCAATTCTTAGGGGTG 5600
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2748 GTCTCAGGTAGATGTGATGCAGCAGGCCACCAATGCAATTCTTAGGGGTG 2797

                   5601          .         .         .         .         . 5650
hg03949            5601 GCACCATTCTGGCTCCCACTGTTTCTGCAAAAACCATTGCAGAACAACTT 5650
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2798 GCACCATTCTGGCTCCCACTGTTTCTGCAAAAACCATTGCAGAACAACTT 2847

                   5651          .         .         .         .         . 5700
hg03949            5651 GCTGAAAAGATCAATGCCAAGCTCAATTATGTGCCGTTAGAGAAACAAGA 5700
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2848 GCTGAAAAGATCAATGCCAAGCTCAATTATGTGCCGTTAGAGAAACAAGA 2897

                   5701          .         .         .         .         . 5750
hg03949            5701 AGAAGAGAGACAGGATGGTGGACAGAATGAATCTTTTAAGAGATATGAAG 5750
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2898 AGAAGAGAGACAGGATGGTGGACAGAATGAATCTTTTAAGAGATATGAAG 2947

                   5751          .         .         .         .         . 5800
hg03949            5751 AAGAATTAGAGATCAATGACTTCCCACAGACTGCTAGGTGGAAAGTTACC 5800
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2948 AAGAATTAGAGATCAATGACTTCCCACAGACTGCTAGGTGGAAAGTTACC 2997

                   5801          .         .         .         .         . 5850
hg03949            5801 TCTAAGGAAGCTCTGCAGAGAATCAGTGAATACTCTGAAGCCGCAATTAC 5850
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   2998 TCTAAGGAAGCTCTGCAGAGAATCAGTGAATACTCTGAAGCCGCAATTAC 3047

                   5851          .         .         .         .         . 5900
hg03949            5851 AATCAGAGGAACCTACTTCCCTCCTGGCAAAGAACCCAAGGAAGGCGAGC 5900
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3048 AATCAGAGGAACCTACTTCCCTCCTGGCAAAGAACCCAAGGAAGGCGAGC 3097

                   5901          .         .         .         .         . 5950
hg03949            5901 GGAAGATTTACTTGGCAATTGAAAGTGCCAATGAACTGGCTGTGCAGAAA 5950
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3098 GGAAGATTTACTTGGCAATTGAAAGTGCCAATGAACTGGCTGTGCAGAAA 3147

                   5951          .         .         .         .         . 6000
hg03949            5951 GCAAAGGCAGAAATCACCAGGCTCATAAAAGAAGAGCTGATCCGGCTGCA 6000
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3148 GCAAAGGCAGAAATCACCAGGCTCATAAAAGAAGAGCTGATCCGGCTGCA 3197

                   6001          .         .         .         .         . 6050
hg03949            6001 AAATTCATACCAACCAACAAATAAAGGAAGATACAAAGTCTTATAGACAT 6050
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3198 AAATTCATACCAACCAACAAATAAAGGAAGATACAAAGTCTTATAGACAT 3247

                   6051          .         .         .         .         . 6100
hg03949            6051 CCGGAAAAAAGATTTTTACCTGTGCTGGTCTATGATGTATGTGGCAGTTG 6100
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3248 CCGGAAAAAAGATTTTTACCTGTGCTGGTCTATGATGTATGTGGCAGTTG 3297

                   6101          .         .         .         .         . 6150
hg03949            6101 CTGTCTGCAGTTTACAATGTATTGTAAATGAAGATTTTTTAAATTCTATC 6150
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3298 CTGTCTGCAGTTTACAATGTATTGTAAATGAAGATTTTTTAAATTCTATC 3347

                   6151          .         .         .         .         . 6200
hg03949            6151 TTGCTGATTTTTTTTAAATATAAGAAACTGGTACTTGGTAAAGAAATCTG 6200
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3348 TTGCTGATTTTTTTTAAATATAAGAAACTGGTACTTGGTAAAGAAATCTG 3397

                   6201          .         .         .         .         . 6250
hg03949            6201 TCCGTAAGTACCCCCACAATCAGTCAAACTATATTTAAAGCCAGCCTGTT 6250
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3398 TCCGTAAGTACCCCCACAATCAGTCAAACTATATTTAAAGCCAGCCTGTT 3447

                   6251          .         .         .         .         . 6300
hg03949            6251 TTCAGAGTATGATGTCCTTTAATGTAAACTCAAATATCAATATTTTAAAT 6300
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3448 TTCAGAGTATGATGTCCTTTAATGTAAACTCAAATATCAATATTTTAAAT 3497

                   6301          .         .         .         .         . 6350
hg03949            6301 GTCCGGATAATATTCTAGAGGTTTAAAAAATGGAAATATTTGAACTTTCT 6350
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3498 GTCCGGATAATATTCTAGAGGTTTAAAAAATGGAAATATTTGAACTTTCT 3547

                   6351          .         .         .         .         . 6400
hg03949            6351 ATTGAAGACAATAAAGTACACAAGTCGTTAAGGGGCTATTCACTTTATCC 6400
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3548 ATTGAAGACAATAAAGTACACAAGTCGTTAAGGGGCTATTCACTTTATCC 3597

                   6401          .         .         .         .         . 6450
hg03949            6401 TGTACTTTCAATGAAATTGTGATCATTTCCTAAGAAAAGGTAAAATTCAC 6450
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3598 TGTACTTTCAATGAAATTGTGATCATTTCCTAAGAAAAGGTAAAATTCAC 3647

                   6451          .         .         .         .         . 6500
hg03949            6451 TATCATATTTTGTGTCCCCACCTTGATGTTACATGACTCTGGAACAATAT 6500
                        ||||||||||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3648 TATCATATTTTGTGTCCCCACCTTGATGTTACATGACTCTGGAACAATAT 3697

                   6501          .         .         .         .    6543
hg03949            6501 GAACTGGATTTAAGAATGTTATAATAGAAGTCTTACAAAATGG 6543
                        |||||||||||||||||||||||||||||||||||||||||||
hg03949(revised)   3698 GAACTGGATTTAAGAATGTTATAATAGAAGTCTTACAAAATGG 3740