# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00029.fasta.huge -Q ../query/KIAA0002.ptfa ./tmplib.22663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0002, 555 aa
 vs ./tmplib.22663 library

1986950 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.1670+/-0.00457; mu= 16.9521+/- 0.312
 mean_var=70.6145+/-16.676, 0's: 0 Z-trim: 2  B-trim: 48 in 1/39
 Lambda= 0.152626

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0098  ( 553 res)   bm00714                     ( 553)  825 191.2 1.7e-49


>>KIAA0098  ( 553 res)   bm00714                          (553 aa)
 initn: 735 init1: 332 opt: 825  Z-score: 980.3  bits: 191.2 E(): 1.7e-49
Smith-Waterman score: 825;  31.631% identity (66.601% similar) in 509 aa overlap (31-531:42-545)

               10        20        30        40        50        60
KIAA00 TASCRLAMALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPKGMN
                                     ::: :.  .:.: : .:.: ::. ::.:..
KIAA00 TMASMGTLAFDEYGRPFLIIKDQDRKSRLMGLE-ALKSHIMAAKAVANTMRTSLGPNGLD
              20        30        40         50        60        70

               70        80        90       100       110       120
KIAA00 KMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLE
       ::....   . ::::.::::  ..:.:  ::..:  :. :..:.::::. :.:.::::::
KIAA00 KMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLE
               80        90       100       110       120       130

              130       140       150       160       170       180
KIAA00 LAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDIDEVSSLLRTSIMSKQY
        ::.::  :.   .. .::: : : : : : ..      ...: . . .  .:.. ::  
KIAA00 EAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVV
              140       150       160       170       180       190

               190       200         210       220       230       
KIAA00 GN-EVFLAKLIAQACVSIFPDSGHFNVDN--IRVCKILGSGISSSSVLHGMVFKKE-TEG
       .. .  .:.. ..: ...  :  . .::   :.:   .:. . ......:..  :. .. 
KIAA00 NSCHRQMAEIAVNAVLTV-ADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP
              200        210       220       230       240         

        240        250       260       270       280       290     
KIAA00 DVTS-VKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIADTGA
       .. . :.:::::. .:::.    .::  . . ..:.   ..: :.. .. ... : .:::
KIAA00 QMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGA
     250       260       270       280       290       300         

         300       310       320       330       340       350     
KIAA00 NVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCD
       :...      : : :   . :.  ::  .  ... .  ..:.  .::..  . :..:   
KIAA00 NLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAG
     310       320       330       340       350       360         

         360         370       380       390       400       410   
KIAA00 SVYLSEVGDTQ--VVVFKHEKEDGAISTIVLRGSTDNLMDDIERVVDDGVNTFKVLTRDK
        :     : :.  ..:... :.. :. :: .::..  .... .: . :.. ... : ::.
KIAA00 LVQEISFGTTKDKMLVIEQCKNSRAV-TIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDN
     370       380       390        400       410       420        

           420       430       440       450       460       470   
KIAA00 RLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISK
       :.: ::::.::  :  ... .. :: :::::.. ::.:.:.:: ::.::::..  .....
KIAA00 RVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTE
      430       440       450       460       470       480        

            480       490       500       510       520       530  
KIAA00 LYAVH-QEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQII
       . : . .: :  .:.:   .  ...:: .  ...: .::   :.:::. .  .:..:.: 
KIAA00 VRARQVKEMNPALGIDCLHK--GTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIR
      490       500         510       520       530       540      

            540       550     
KIAA00 MAKPAGGPKPPSGKKDWDDDQND
                              
KIAA00 KPGESEE                
        550                   




555 residues in 1 query   sequences
1986950 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:03:59 2008 done: Thu Dec 18 15:04:00 2008
 Total Scan time:  0.470 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]