hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14353547/chunk_1/iprscan-20080501-14353547.nocrc
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Query sequence: KIAA0002
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00118.14.ls TCP-1/cpn60 chaperonin family                632.3   3.9e-187   1
PF00118.14.fs TCP-1/cpn60 chaperonin family                630.2   1.7e-186   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00118.14.fs   1/1      46   536 ..     1   537 []   630.2 1.7e-186
PF00118.14.ls   1/1      46   536 ..     1   537 []   632.3 3.9e-187

Alignments of top-scoring domains:
PF00118.14.fs: domain 1 of 1, from 46 to 536: score 630.2, E = 1.7e-186
                   *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen
                      la  ++t +GPkG+nKm++n+   ++++TnD+aTIl+e+e+qhP   
    KIAA0002    46    LAQTTRTAYGPKGMNKMVINHL-EKLFVTNDAATILRELEVQHP--- 88   

                   lgAkllveaskkQddevGDGTTtvvvLAgeLLkeaekLinaGlhPtqIir
                    +Ak++v+as +Q+ evGDGT++v+v+Ag+LL+ ae+L+  Gl ++++i+
    KIAA0002    89 -AAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIE 137  

                   GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia
                   Gye A++ka e+L++l+  + +n + + +e+++ ++ts+ sK+++ n+++
    KIAA0002   138 GYEIACRKAHEILPNLVCCSAKNLR-DIDEVSSLLRTSIMSKQYG-NEVF 185  

                   dAlakvgvdavitveeekndkysfdldnievvkglGgsifdsglisGyvi
                     lak+ + a+++++++ +    f++dni+v+k+lG+ i+ s ++ G+v+
    KIAA0002   186 --LAKLIAQACVSIFPDSGH---FNVDNIRVCKILGSGISSSSVLHGMVF 230  

                   tkeerhpvelempkrlendaKIavlncpLeiLelktetkrplviiasded
                   +ke+++     +++ +++ aKIav++cp++    +tetk ++v+i+ +e+
    KIAA0002   231 KKETEG-----DVTSVKD-AKIAVYSCPFD--GMITETK-GTVLIKTAEE 271  

                   leaLstlEenklkgkvkviavkkRvcdgpnvvitqkegidDiAlhtladt
                   l ++s++Een ++ +vk+ia++     g+nvv+t +  + D+Alh+ +  
    KIAA0002   272 LMNFSKGEENLMDAQVKAIADT-----GANVVVTGG-KVADMALHYAN-- 313  

                   visdkagImalrrvskedlgrlakvlgakvvttligpgagsedeeeiGer
                       k++Im +r  sk dl+rl+k++ga+++++l  p       ee+G++
    KIAA0002   314 ----KYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPV-----LEEMGHC 354  

                   devlekeigdstsddkvtkleerkarLsgkvatIllRGateveldElerr
                   d+v+  e gd     +v++++  k    g + tI+lRG+t++  d++er 
    KIAA0002   355 DSVYLSEVGD----TQVVVFKHEKE--DGAISTIVLRGSTDNLMDDIERV 398  

                   ieDAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeqlavea
                   ++D++n  k + +d+r+VPGGGa+Eielak++++y +++++g+eq+a+++
    KIAA0002   399 VDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSY-GETCPGLEQYAIKK 447  

                   fakALeviPkiLAeNAGldgidviskLraehakGnsdlknyGydaatgki
                   fa+A+e+iP++LAeN+G+ +++viskL+a h +Gn   kn+G+d++ +  
    KIAA0002   448 FAEAFEAIPRALAENSGVKANEVISKLYAVHQEGN---KNVGLDIEAEVP 494  

                   ..vdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-*
                      dm+eaGI+D +  k +a+klAt aA ++L++D+iImakp   
    KIAA0002   495 avKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKP    536  

PF00118.14.ls: domain 1 of 1, from 46 to 536: score 632.3, E = 3.9e-187
                   *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen
                      la  ++t +GPkG+nKm++n+   ++++TnD+aTIl+e+e+qhP   
    KIAA0002    46    LAQTTRTAYGPKGMNKMVINHL-EKLFVTNDAATILRELEVQHP--- 88   

                   lgAkllveaskkQddevGDGTTtvvvLAgeLLkeaekLinaGlhPtqIir
                    +Ak++v+as +Q+ evGDGT++v+v+Ag+LL+ ae+L+  Gl ++++i+
    KIAA0002    89 -AAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIE 137  

                   GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia
                   Gye A++ka e+L++l+  + +n + + +e+++ ++ts+ sK+++ n+++
    KIAA0002   138 GYEIACRKAHEILPNLVCCSAKNLR-DIDEVSSLLRTSIMSKQYG-NEVF 185  

                   dAlakvgvdavitveeekndkysfdldnievvkglGgsifdsglisGyvi
                     lak+ + a+++++++ +    f++dni+v+k+lG+ i+ s ++ G+v+
    KIAA0002   186 --LAKLIAQACVSIFPDSGH---FNVDNIRVCKILGSGISSSSVLHGMVF 230  

                   tkeerhpvelempkrlendaKIavlncpLeiLelktetkrplviiasded
                   +ke+++     +++ +++ aKIav++cp++    +tetk ++v+i+ +e+
    KIAA0002   231 KKETEG-----DVTSVKD-AKIAVYSCPFD--GMITETK-GTVLIKTAEE 271  

                   leaLstlEenklkgkvkviavkkRvcdgpnvvitqkegidDiAlhtladt
                   l ++s++Een ++ +vk+ia++     g+nvv+t +  + D+Alh+ +  
    KIAA0002   272 LMNFSKGEENLMDAQVKAIADT-----GANVVVTGG-KVADMALHYAN-- 313  

                   visdkagImalrrvskedlgrlakvlgakvvttligpgagsedeeeiGer
                       k++Im +r  sk dl+rl+k++ga+++++l  p       ee+G++
    KIAA0002   314 ----KYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPV-----LEEMGHC 354  

                   devlekeigdstsddkvtkleerkarLsgkvatIllRGateveldElerr
                   d+v+  e gd     +v++++  k    g + tI+lRG+t++  d++er 
    KIAA0002   355 DSVYLSEVGD----TQVVVFKHEKE--DGAISTIVLRGSTDNLMDDIERV 398  

                   ieDAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeqlavea
                   ++D++n  k + +d+r+VPGGGa+Eielak++++y +++++g+eq+a+++
    KIAA0002   399 VDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSY-GETCPGLEQYAIKK 447  

                   fakALeviPkiLAeNAGldgidviskLraehakGnsdlknyGydaatgki
                   fa+A+e+iP++LAeN+G+ +++viskL+a h +Gn   kn+G+d++ +  
    KIAA0002   448 FAEAFEAIPRALAENSGVKANEVISKLYAVHQEGN---KNVGLDIEAEVP 494  

                   ..vdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-*
                      dm+eaGI+D +  k +a+klAt aA ++L++D+iImakp   
    KIAA0002   495 avKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKP    536  

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