hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14353547/chunk_1/iprscan-20080501-14353547.nocrc
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Query sequence: KIAA0002
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
TIGR02346      chap_CCT_theta: T-complex protein 1, t  1390.1          0   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
TIGR02346        1/1      17   546 ..     1   554 []  1390.1        0

Alignments of top-scoring domains:
TIGR02346: domain 1 of 1, from 17 to 546: score 1390.1, E = 0
                   *->ginsLLKeGyrhmsGleeAviKNIeACKELsniTrTSLGPNGMNKmV
                      g++++LKeG++h+sGleeAv++NI+ACKEL+++TrT++GP+GMNKmV
    KIAA0002    17    GFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPKGMNKMV 63   

                   INHLdKlFVTnDAATIlrELEVqHPAAKlLVmAskmQenEiGDgTNlVlv
                   INHL+KlFVTnDAATIlrELEVqHPAAK++VmAs+mQe+E+GDgTN+Vlv
    KIAA0002    64 INHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLV 113  

                   lAGELLekAEeLIrmGLhpsEIIkGYeqAlkkamevLeeLvvwkevkdlr
                   +AG+LLe+AEeL+r+GL++sE+I+GYe+A++ka+e+L++Lv+++ +k+lr
    KIAA0002   114 FAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCS-AKNLR 162  

                   dkeEvikalkasisSKqygnNedfLaqLvAkAcitvlPknpenGEiPYFN
                   d++Ev+++l++si+SKqygn e+fLa+L+A+Ac++++P+ +++     FN
    KIAA0002   163 DIDEVSSLLRTSIMSKQYGN-EVFLAKLIAQACVSIFPD-SGH-----FN 205  

                   VDNIRVsKilGGsisnSeVlkGMVfkReaeGsvKsLsrvknAKVAVfsCp
                   VDNIRV+KilG++is+S+Vl+GMVfk+e+eG+v+   +vk+AK+AV+sCp
    KIAA0002   206 VDNIRVCKILGSGISSSSVLHGMVFKKETEGDVT---SVKDAKIAVYSCP 252  

                   LDtatTETKGTVLihnAeELlNYsKGEEnqiealIKaIADsGVkVIVtGG
                   +D+++TETKGTVLi++AeEL+N+sKGEEn+++a++KaIAD+G++V+VtGG
    KIAA0002   253 FDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIADTGANVVVTGG 302  

                   svgDmALHYvekYnIMvlKipSKFELRRLCKtvGAtplaRLgaPqPEelG
                   +v+DmALHY++kYnIM+++++SK++LRRLCKtvGAt+l+RL++P++Ee+G
    KIAA0002   303 KVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMG 352  

                   yVdsvyVsEIGgqkVTvfkqengdiskisTIiLRGSTkNlLDDiERAIDD
                   ++dsvy+sE+G+++V+vfk+e++d ++isTI+LRGST+Nl+DDiER +DD
    KIAA0002   353 HCDSVYLSEVGDTQVVVFKHEKED-GAISTIVLRGSTDNLMDDIERVVDD 401  

                   GVNviKaLvKDnGGrllpGAGATEIeLakrLkkyanklpGLdQYAIKkFA
                   GVN++K+L++D+  rl+pG+GATEIeLak++++y++++pGL+QYAIKkFA
    KIAA0002   402 GVNTFKVLTRDK--RLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFA 449  

                   eAFEiIPrtLAeNAGLnaneViskLYaaHnvtEPGAvkkGnkslGIDIea
                   eAFE+IPr+LAeN+G++aneViskLYa+H        ++Gnk++G+DIea
    KIAA0002   450 EAFEAIPRALAENSGVKANEVISKLYAVH--------QEGNKNVGLDIEA 491  

                   esdkqgvkDasEagIyDllaaKkfAIkLAteAAvTVLrVDQIIMAKPAGG
                   e++  +vkD+ EagI+D++++K++AIkLAt+AAvTVLrVDQIIMAKPAGG
    KIAA0002   492 EVP--AVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGG 539  

                   PKppqgk<-*
                   PKpp+gk   
    KIAA0002   540 PKPPSGK    546  

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