hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14371716/chunk_1/iprscan-20080501-14371716.nocrc
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Query sequence: KIAA0003
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00186                                                 455.6   2.5e-132   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00186    1/1     307   522 ..     1   262 []   455.6 2.5e-132

Alignments of top-scoring domains:
SM00186: domain 1 of 1, from 307 to 522: score 455.6, E = 2.5e-132
                   *->klprDCsdvlqknnGgktSGlYtIypdgsrsrplkVyCDMeTdGGGW
                      k +rDC+dv+q   G ++SG+YtIy +++ ++p kV+C M+++GGGW
    KIAA0003   307    KPFRDCADVYQA--GFNKSGIYTIYINNM-PEPKKVFCNMDVNGGGW 350  

                   TViQrRmDGsvdFyRgWkdYkeGFGnldgkgtGKiCviGEFWLGNeniHl
                   TViQ+R+DGs+dF+RgWk+Yk+GFGn++          GE+WLGNe+i++
    KIAA0003   351 TVIQHREDGSLDFQRGWKEYKMGFGNPS----------GEYWLGNEFIFA 390  

                   LTsqgktpyeLRvDLeDwegntayAkYdrFkvadwvefdkeadgYrLhig
                   +Tsq++  y+LR++L+Dwegn+ay++YdrF++++      e+++YrL++ 
    KIAA0003   391 ITSQRQ--YMLRIELMDWEGNRAYSQYDRFHIGN------EKQNYRLYLK 432  

                   gYsGtAGDaLvfGadqeksltyHngmqFSTyDrDNDkyetnnPtkCAeey
                   g++GtAG++         s+ + +g++FST+D DND+++++    CA++ 
    KIAA0003   433 GHTGTAGKQ---------SSLILHGADFSTKDADNDNCMCK----CALML 469  

                   gGGWWYnsChaaNLNGrYYpgGeYdktkvdygydnGInWatwkGsatGdv
                   +GGWW+++C+++NLNG++Y+ G+      ++g++nGI+W+++kG      
    KIAA0003   470 TGGWWFDACGPSNLNGMFYTAGQ------NHGKLNGIKWHYFKGP----- 508  

                   ywySlkfteMKiRPl<-*
                     ySl++t+M+iRPl   
    KIAA0003   509 -SYSLRSTTMMIRPL    522  

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