hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14422114/chunk_1/iprscan-20080501-14422114.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0006 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00325 179.1 4.3e-49 1 SM00326 94.5 1.2e-23 1 SM00033 81.3 1.2e-19 1 SM00233 50.3 2.6e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00033 1/1 1 103 [. 1 100 [] 81.3 1.2e-19 SM00326 1/1 160 215 .. 1 58 [] 94.5 1.2e-23 SM00325 1/1 242 417 .. 1 211 [] 179.1 4.3e-49 SM00233 1/1 447 547 .. 1 82 [] 50.3 2.6e-10 Alignments of top-scoring domains: SM00033: domain 1 of 1, from 1 to 103: score 81.3, E = 1.2e-19 *->eeeallrWinsll...........kvtnfssdlkDGvvLckLlnsls ee+++ W+ sl+ ++++++ ++++++ s+lk+GvvLckL+n+l+ KIAA0006 1 -EEQIVTWLISLGvlespkkticdPEEFLKSSLKNGVVLCKLINRLM 46 Pagsvdkkk.....rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlv P gsv+k + +++++ ++++Nin++l+ + l v++fdp+Dl+ KIAA0006 47 P-GSVEKFCldpqtEADCINNINDFLKGCATL-------QVEIFDPDDLY 88 egnenkklilgviwtLirl<-* g ++ +v+ tL + KIAA0006 89 SG----VNFSKVLSTLLAV 103 SM00326: domain 1 of 1, from 160 to 215: score 94.5, E = 1.2e-23 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG v+A ++++ +nedELs+ kGDii+v++ +++gWweG+ln G++G KIAA0006 160 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTG 204 lfPsnYVeeie<-* +fPsnYV+ei+ KIAA0006 205 WFPSNYVREIK 215 SM00325: domain 1 of 1, from 242 to 417: score 179.1, E = 4.3e-49 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl vl+ +l+TE++Y ++L+ l+ ++l+pL++ ++ ls ev++l KIAA0006 242 VLQNILDTEKEYAKELQSLLVTYLRPLQSNNN------LSTVEVTSL 282 FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv g N+ee+++f+++++++Lee+++ + ++++g + KIAA0006 283 LG-NFEEVCTFQQTLCQALEECSKFPE---------------NQHKVGGC 316 FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk +l l +++f+ +Y +Yc+nhp+a+++l++ +++++++f++ + ++ KIAA0006 317 LLSL--MPHFKSMYLAYCANHPSAVNVLTQ-----HSDELEQFMENQGAS 359 pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk ++ + l L++ L+kP+ Rl kY LL+el++h+++ h+d++d+ k KIAA0006 360 SPGI------LILTTNLSKPFMRLEKYVTLLQELERHMEDTHPDHQDILK 403 AleaikelasqvNe<-* A+ a k+l+ q+++ KIAA0006 404 AIVAFKTLMGQCQD 417 SM00233: domain 1 of 1, from 447 to 547: score 50.3, E = 2.6e-10 *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk......kpkgsi vi +++++ + ++ +ry++Lf++vL+ +++ ++ ++g+i KIAA0006 447 VIFMSQVMVQYgaCeEKEERYLMLFSNVLIMLSASprmsgfIYQGKI 493 pLsgcsvre.p.......cFeivt.dr.tlllqAeseeereeWvealqsa p+ g v++ ++ ++++ +Fei+ ++ +++++++++ ++++eW+e l+++ KIAA0006 494 PIAGTVVTRlDeiegndcTFEITGnTVeRIVVHCNNNQDFQEWLEQLNRL 543 iaka<-* i+ KIAA0006 544 IRGP 547 //