# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00602.fasta.huge -Q ../query/KIAA0020.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0020, 647 aa
 vs ./tmplib.23147 library

1986858 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.9773+/-0.00588; mu= 8.6887+/- 0.398
 mean_var=131.3963+/-32.030, 0's: 0 Z-trim: 4  B-trim: 16 in 1/39
 Lambda= 0.111888

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0099  ( 1175 res)   hk05583                    (1175)  272 56.1 2.1e-08


>>KIAA0099  ( 1175 res)   hk05583                         (1175 aa)
 initn: 127 init1:  64 opt: 272  Z-score: 242.8  bits: 56.1 E(): 2.1e-08
Smith-Waterman score: 272;  21.148% identity (56.495% similar) in 331 aa overlap (160-469:830-1148)

     130       140       150       160        170       180        
KIAA00 NYDIVVRAKQMWEILRRKDCDKEKRVKLMSDLQ-KLIQGKIKTIAFAHDSTRVIQCYIQY
                                     .:: . : :.:  ..  . ..: ::  .. 
KIAA00 SSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLER
     800       810       820       830       840       850         

      190       200       210       220       230       240        
KIAA00 GNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHA
       ..  .:. .:.:. .   .:.   ..  ...::. .::  :   . . ..::: ..  . 
KIAA00 ATPAERQLVFNEILQAAYQLNVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQM
     860       870       880       890       900       910         

      250           260       270       280        290        300  
KIAA00 EASAIV----EYAYNDKAILEQRNMLTEELYGNTFQLYKSAD-HRTLDKVLE-VQPEKLE
        .  ..    :.  .:. ..   : ...:: :....  :. . .....: .: :::..:.
KIAA00 YGCRVIQKALEFIPSDQQVI---NEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ
     920       930          940       950       960       970      

            310       320       330       340       350       360  
KIAA00 LIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEAIREAVVYLAHTHD
       .:.: .:      .:  :.  :    .:.  .. .  :     ..: ... .  :.. . 
KIAA00 FIIDAFK------GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQY
        980             990      1000      1010      1020      1030

            370       380       390       400       410        420 
KIAA00 GARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDD-TKLVKQIII
       :  : .: : :: :.:.. ::  ..  :  ... ...  :.     :.   ..  . ..:
KIAA00 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVV---EKCVTHASRTERAVLI
             1040      1050      1060      1070         1080       

                    430       440       450             460        
KIAA00 SEII-------SSLPSIVNDKYGRKVLLYLLSPRDPA------HTVREIIEVLQKGDGNA
       .:.        :.: ....:.:.  :.  ...  .:.      : .:  : .:.:   . 
KIAA00 DEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGK
      1090      1100      1110      1120      1130      1140       

      470       480       490       500       510       520        
KIAA00 HSKKDTEVRRRELLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAI
       :                                                           
KIAA00 HILAKLEKYYMKNGVDLGPICGPPNGII                                
      1150      1160      1170                                     




647 residues in 1 query   sequences
1986858 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:04:54 2008 done: Thu Dec 18 15:04:54 2008
 Total Scan time:  0.520 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]