hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15060540/chunk_1/iprscan-20080501-15060540.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0020 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08144.2.fs CPL (NUC119) domain 337.6 3.7e-102 1 PF08144.2.ls CPL (NUC119) domain 339.5 5.3e-99 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08144.2.fs 1/1 432 579 .. 1 160 [] 337.6 3.7e-102 PF08144.2.ls 1/1 432 579 .. 1 160 [] 339.5 5.3e-99 Alignments of top-scoring domains: PF08144.2.fs: domain 1 of 1, from 432 to 579: score 337.6, E = 3.7e-102 *->indkYGrKVilYLvsPRDpahfvpelIelLeeGDgnahSKKdkklRr +ndkYGrKV+lYL+sPRDpah+v e+Ie+L++GDgnahSKKd+++Rr KIAA0020 432 VNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEVRR 478 keLLesIsppLlsYLaehiqEvVleankskFvAAcllvtSslglatGdvl +eLLesIsp+LlsYL+eh qEvVl++ +Ac+lv+++lg+atGdv KIAA0020 479 RELLESISPALLSYLQEHAQEVVLDK------SACVLVSDILGSATGDV- 521 aeirGqsvmkAiasLAakefvPggqeGelhIiehpAGhlvLkwllrqDkk q+ m+AiasLAa ++Pgg++GelhI+ehpAGhlvLkwl +qDkk KIAA0020 522 -----QPTMNAIASLAATGLHPGGKDGELHIAEHPAGHLVLKWLIEQDKK 566 lkedgkEgilAka<-* +ke+g+Eg++Ak+ KIAA0020 567 MKENGREGCFAKT 579 PF08144.2.ls: domain 1 of 1, from 432 to 579: score 339.5, E = 5.3e-99 *->indkYGrKVilYLvsPRDpahfvpelIelLeeGDgnahSKKdkklRr +ndkYGrKV+lYL+sPRDpah+v e+Ie+L++GDgnahSKKd+++Rr KIAA0020 432 VNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEVRR 478 keLLesIsppLlsYLaehiqEvVleankskFvAAcllvtSslglatGdvl +eLLesIsp+LlsYL+eh qEvVl++ +Ac+lv+++lg+atGdv KIAA0020 479 RELLESISPALLSYLQEHAQEVVLDK------SACVLVSDILGSATGDV- 521 aeirGqsvmkAiasLAakefvPggqeGelhIiehpAGhlvLkwllrqDkk q+ m+AiasLAa ++Pgg++GelhI+ehpAGhlvLkwl +qDkk KIAA0020 522 -----QPTMNAIASLAATGLHPGGKDGELHIAEHPAGHLVLKWLIEQDKK 566 lkedgkEgilAka<-* +ke+g+Eg++Ak+ KIAA0020 567 MKENGREGCFAKT 579 //