hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15074293/chunk_1/iprscan-20080501-15074293.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0021 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01421.9.ls Reprolysin (M12B) family zinc metallo 369.1 6.4e-108 1 PF01421.9.fs Reprolysin (M12B) family zinc metallo 367.1 2.6e-107 1 PF08516.2.ls ADAM cysteine-rich 231.4 1.9e-66 1 PF08516.2.fs ADAM cysteine-rich 229.4 7.5e-66 1 PF00200.13.fs Disintegrin 126.8 6.1e-39 1 PF00200.13.ls Disintegrin 128.8 1.4e-35 1 PF01562.9.fs Reprolysin family propeptide 91.8 1.3e-24 1 PF07974.3.ls EGF-like domain 25.8 0.00014 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01562.9.fs 1/1 1 47 [. 113 165 .] 91.8 1.3e-24 PF01421.9.fs 1/1 96 290 .. 1 203 [] 367.1 2.6e-107 PF01421.9.ls 1/1 96 290 .. 1 203 [] 369.1 6.4e-108 PF00200.13.fs 1/1 307 383 .. 1 80 [] 126.8 6.1e-39 PF00200.13.ls 1/1 307 383 .. 1 80 [] 128.8 1.4e-35 PF08516.2.fs 1/1 385 501 .. 1 118 [] 229.4 7.5e-66 PF08516.2.ls 1/1 385 501 .. 1 118 [] 231.4 1.9e-66 PF07974.3.ls 1/1 528 557 .. 1 37 [] 25.8 0.00014 Alignments of top-scoring domains: PF01562.9.fs: domain 1 of 1, from 1 to 47: score 91.8, E = 1.3e-24 *->qGyVeGypnSaVslSTCsGGLRGllqlenvsYgIEPlesssgfeAQr qGyVeG++nS+ +lS C GLRGll+len sYgIEPl+ ss+fe KIAA0021 1 QGYVEGVHNSSIALSDCF-GLRGLLHLENASYGIEPLQNSSHFE--- 43 lPHiiY<-* HiiY KIAA0021 44 --HIIY 47 PF01421.9.fs: domain 1 of 1, from 96 to 290: score 367.1, E = 2.6e-107 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrpqLNIrV rY+EL+IVvD+++y+++g++++++r+ ++ ++N+++++Y++ LNIr+ KIAA0021 96 RYVELFIVVDKERYDMMGRNQTAVREEMILLANYLDSMYIM-LNIRI 141 vLvgLEIWsdgDkInvqsdandTLhsFgeWRetdLlkrksHDnAqLLtgi vLvgLEIW++g++In+ + a d+L +F++WRe++L++r++HD AqL+ + KIAA0021 142 VLVGLEIWTNGNLINIVGGAGDVLGNFVQWREKFLITRRRHDSAQLVLKK 191 dfdgntiGaAyvggmCspkrSvGVvqdhspivllvAvtMAHELGHNLGmt f+g t G+A+vg++Cs+++++G++ +++++v+ +A ++AHELGHNLGm+ KIAA0021 192 GFGG-TAGMAFVGTVCSRSHAGGINVFGQITVETFASIVAHELGHNLGMN 240 HDdkntdgCtCegggsCIMnpvassspskKkFSnCSkddyqkFltkqkpq HDd++ +C+C g++sCIMn++as+s+ FS+CS +d++k+ ++ ++ KIAA0021 241 HDDGR--DCSC-GAKSCIMNSGASGSRN---FSSCSAEDFEKLTLNKGGN 284 CLlNkP<-* CLlN P KIAA0021 285 CLLNIP 290 PF01421.9.ls: domain 1 of 1, from 96 to 290: score 369.1, E = 6.4e-108 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrpqLNIrV rY+EL+IVvD+++y+++g++++++r+ ++ ++N+++++Y++ LNIr+ KIAA0021 96 RYVELFIVVDKERYDMMGRNQTAVREEMILLANYLDSMYIM-LNIRI 141 vLvgLEIWsdgDkInvqsdandTLhsFgeWRetdLlkrksHDnAqLLtgi vLvgLEIW++g++In+ + a d+L +F++WRe++L++r++HD AqL+ + KIAA0021 142 VLVGLEIWTNGNLINIVGGAGDVLGNFVQWREKFLITRRRHDSAQLVLKK 191 dfdgntiGaAyvggmCspkrSvGVvqdhspivllvAvtMAHELGHNLGmt f+g t G+A+vg++Cs+++++G++ +++++v+ +A ++AHELGHNLGm+ KIAA0021 192 GFGG-TAGMAFVGTVCSRSHAGGINVFGQITVETFASIVAHELGHNLGMN 240 HDdkntdgCtCegggsCIMnpvassspskKkFSnCSkddyqkFltkqkpq HDd++ +C+C g++sCIMn++as+s+ FS+CS +d++k+ ++ ++ KIAA0021 241 HDDGR--DCSC-GAKSCIMNSGASGSRN---FSSCSAEDFEKLTLNKGGN 284 CLlNkP<-* CLlN P KIAA0021 285 CLLNIP 290 PF00200.13.fs: domain 1 of 1, from 307 to 383: score 126.8, E = 6.1e-39 *->EggEeCDCGspedCqnkdpCCdaktCkLkpGAqCsPsnGpCCknCqf ++gEeCDCG+p++C + dpCC+ +tCkLk+ A+C+ G CCk+C+f KIAA0021 307 DAGEECDCGTPKEC-ELDPCCEGSTCKLKSFAECA--YGDCCKDCRF 350 kpkgtvCRpatgeCDlpeyCnGtSaeCPpdpyv<-* +p gt+CR+ t+eCD peyCnG+S C pd+++ KIAA0021 351 LPGGTLCRGKTSECDVPEYCNGSSQFCQPDVFI 383 PF00200.13.ls: domain 1 of 1, from 307 to 383: score 128.8, E = 1.4e-35 *->EggEeCDCGspedCqnkdpCCdaktCkLkpGAqCsPsnGpCCknCqf ++gEeCDCG+p++C + dpCC+ +tCkLk+ A+C+ G CCk+C+f KIAA0021 307 DAGEECDCGTPKEC-ELDPCCEGSTCKLKSFAECA--YGDCCKDCRF 350 kpkgtvCRpatgeCDlpeyCnGtSaeCPpdpyv<-* +p gt+CR+ t+eCD peyCnG+S C pd+++ KIAA0021 351 LPGGTLCRGKTSECDVPEYCNGSSQFCQPDVFI 383 PF08516.2.fs: domain 1 of 1, from 385 to 501: score 229.4, E = 7.5e-66 *->DGtPCqnnqgYCYnGnCptrdqQCqelFGpgAkvApdsCYeelNskG +G+PCqnn++YCYnG+C+ +d QCq +FG++Ak Ap++C+ e+NskG KIAA0021 385 NGYPCQNNKAYCYNGMCQYYDAQCQVIFGSKAKAAPKDCFIEVNSKG 431 drfGNCGkesrngtyipCepqDvkCGkLqCtnvs.lpllgehatviytni drfGNCG++ +++y++C++ +++CGkLqC+nv+++p++g +i+t++ KIAA0021 432 DRFGNCGFS--GNEYKKCATGNALCGKLQCENVQeIPVFGIVPAIIQTPS 479 ngvtCwgtdyhlgmddpDiGlV<-* +g +Cwg+d++lg+d+pD+G+V KIAA0021 480 RGTKCWGVDFQLGSDVPDPGMV 501 PF08516.2.ls: domain 1 of 1, from 385 to 501: score 231.4, E = 1.9e-66 *->DGtPCqnnqgYCYnGnCptrdqQCqelFGpgAkvApdsCYeelNskG +G+PCqnn++YCYnG+C+ +d QCq +FG++Ak Ap++C+ e+NskG KIAA0021 385 NGYPCQNNKAYCYNGMCQYYDAQCQVIFGSKAKAAPKDCFIEVNSKG 431 drfGNCGkesrngtyipCepqDvkCGkLqCtnvs.lpllgehatviytni drfGNCG++ +++y++C++ +++CGkLqC+nv+++p++g +i+t++ KIAA0021 432 DRFGNCGFS--GNEYKKCATGNALCGKLQCENVQeIPVFGIVPAIIQTPS 479 ngvtCwgtdyhlgmddpDiGlV<-* +g +Cwg+d++lg+d+pD+G+V KIAA0021 480 RGTKCWGVDFQLGSDVPDPGMV 501 PF07974.3.ls: domain 1 of 1, from 528 to 557: score 25.8, E = 0.00014 *->C.....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+ +++C+g hG+C+s+ + C+C++g + + C KIAA0021 528 CdvqkkCHG-HGVCNSNKN-------CHCENG----WAPPNC 557 //