hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15074293/chunk_1/iprscan-20080501-15074293.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0021
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00608                                                 264.6    7.9e-75   1
SM00050                                                 155.7    4.8e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00050    1/1     307   383 ..     1    81 []   155.7  4.8e-42
SM00608    1/1     384   521 ..     1   152 []   264.6  7.9e-75

Alignments of top-scoring domains:
SM00050: domain 1 of 1, from 307 to 383: score 155.7, E = 4.8e-42
                   *->EeGEECDCGspkeeCrttdpCCdpaTCkLkpgaqCadsGpCCekdCk
                      ++GEECDCG+pk eC + dpCC+++TCkLk++a+Ca +G+CC+ dC+
    KIAA0021   307    DAGEECDCGTPK-EC-ELDPCCEGSTCKLKSFAECA-YGDCCK-DCR 349  

                   fkpaGtlCRpsvdeCDlpEYCnGtSaeCPpDvyv<-*
                   f p GtlCR +++eCD+pEYCnG+S +C+pDv++   
    KIAA0021   350 FLPGGTLCRGKTSECDVPEYCNGSSQFCQPDVFI    383  

SM00608: domain 1 of 1, from 384 to 521: score 264.6, E = 7.9e-75
                   *->qDGtPCdngqgYCynGrCptrdqQCqalFGpgAkvApdsCYeevNsk
                      q+G+PC+n+++YCynG+C+ +d QCq +FG++Ak+Ap +C+ evNsk
    KIAA0021   384    QNGYPCQNNKAYCYNGMCQYYDAQCQVIFGSKAKAAPKDCFIEVNSK 430  

                   GdrfGNCGrensangtyipCapeDvkCGkLqCtnvtelPllgehatviqs
                   GdrfGNCG+++   ++y++Ca+ +++CGkLqC+nv+e+P++g   ++iq+
    KIAA0021   431 GDRFGNCGFSG---NEYKKCATGNALCGKLQCENVQEIPVFGIVPAIIQT 477  

                   niggyiqkgitCwgtdyhlgtdPvdltidpDpGlVkdGTkCGpgKVCing
                   +++     g +Cwg+d++lg+d     + pDpG+V+ GTkCG gK+C+n 
    KIAA0021   478 PSR-----GTKCWGVDFQLGSD-----V-PDPGMVNEGTKCGAGKICRNF 516  

                   rCvdv<-*
                   +Cvd    
    KIAA0021   517 QCVDA    521  

//