# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00480.fasta.huge -Q ../query/KIAA0022.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0022, 231 aa
 vs ./tmplib.23147 library

1987274 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.1511+/-0.00402; mu= 13.0360+/- 0.274
 mean_var=61.3168+/-14.052, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.163789

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0709  ( 1484 res)   ah06501                    (1484)  242 66.2 8.5e-12


>>KIAA0709  ( 1484 res)   ah06501                         (1484 aa)
 initn: 246 init1:  94 opt: 242  Z-score: 303.7  bits: 66.2 E(): 8.5e-12
Smith-Waterman score: 245;  24.201% identity (57.078% similar) in 219 aa overlap (23-225:1266-1481)

                       10        20            30        40        
KIAA00         LRAALPALLLPLLGLAAAAVADCPS----STWIQFQDSCYIFLQEAIKVESI
                                     ::.    :.:: :.. :: : .: .   . 
KIAA07 TTSCDTKLQGAVCGVSSGPPPPRRISYHGSCPQGLADSAWIPFREHCYSFHMELL--LGH
        1240      1250      1260      1270      1280      1290     

       50        60        70        80        90       100        
KIAA00 EDVRNQCTDHGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSN
       ...:..:   :. ..:: .: ::.:. . :..         ::: ..   ... : ::. 
KIAA07 KEARQRCQRAGGAVLSILDEMENVFVWEHLQSYEGQSRGAWLGMNFNPKGGTLVWQDNTA
          1300      1310      1320      1330      1340      1350   

      110       120         130       140       150       160      
KIAA00 MTFDKWTDQDDDEDLV--DTCAFLHIKTGEWKKGNCEVSSVEGTLCKTAIPYKRKY----
       .....:       ...  ..: ... ..: :. : : .. . :..::     . ..    
KIAA07 VNYSNWGPPGLGPSMLSHNSCYWIQSNSGLWRPGAC-TNITMGVVCKLPRAEQSSFSPSA
          1360      1370      1380       1390      1400      1410  

            170       180       190         200        210         
KIAA00 LSDNHILISALVIASTVILTVLGAIIWFLYKKHSDSR--FTTV-FSTAPQSPYN--EDCV
       : .:   . ....:  ..:..: : . .  ...:  :  :  . .: . .:: .  :  .
KIAA07 LPENPAALVVVLMAVLLLLALLTAALILYRRRQSIERGAFEGARYSRSSSSPTEATEKNI
           1420      1430      1440      1450      1460      1470  

       220        230 
KIAA00 LVVGEE-NEYPVQFD
       ::   : ::      
KIAA07 LVSDMEMNEQQE   
           1480       




231 residues in 1 query   sequences
1987274 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:04:58 2008 done: Thu Dec 18 15:04:58 2008
 Total Scan time:  0.290 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]