hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15092787/chunk_1/iprscan-20080501-15092787.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0022 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00059.11.ls Lectin C-type domain 48.1 2.7e-11 1 PF00059.11.fs Lectin C-type domain 46.1 4.8e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00059.11.ls 1/1 44 154 .. 1 125 [] 48.1 2.7e-11 PF00059.11.fs 1/1 49 154 .. 6 125 .] 46.1 4.8e-11 Alignments of top-scoring domains: PF00059.11.ls: domain 1 of 1, from 44 to 154: score 48.1, E = 2.7e-11 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk...s + + ++ ++ C+ +g++ sI+++eE+ af+ +++kk+ ++ KIAA0022 44 KVESIEDVRNQCTDHGAD--MISIHNEEEN----AFILDTLKKqwkG 84 ntyaWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnE ++++ +G+++ + + +++w d+s ++++ +W + + + + KIAA0022 85 PDDILLGMFYDTDDASFKW----FDNSNMTFD-KWTDQDDDEDL----VD 125 dCveiytdtdflaGkWnDepCdskl..pyvCef<-* C+ ++++ +G W+ +C+++ ++ +C++ KIAA0022 126 TCAFLHIK----TGEWKKGNCEVSSveGTLCKT 154 PF00059.11.fs: domain 1 of 1, from 49 to 154: score 46.1, E = 4.8e-11 *->aeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk...sntyaW ++ ++ C+ +g++ sI+++eE+ af+ +++kk+ ++++++ KIAA0022 49 EDVRNQCTDHGAD--MISIHNEEEN----AFILDTLKKqwkGPDDIL 89 IGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCvei +G+++ + + +++w d+s ++++ +W + + + + C+ + KIAA0022 90 LGMFYDTDDASFKW----FDNSNMTFD-KWTDQDDDEDL----VDTCAFL 130 ytdtdflaGkWnDepCdskl..pyvCef<-* +++ +G W+ +C+++ ++ +C++ KIAA0022 131 HIK----TGEWKKGNCEVSSveGTLCKT 154 //