hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15263946/chunk_1/iprscan-20080501-15263946.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0031 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00009.17.ls Elongation factor Tu GTP binding domain 213.6 4.1e-61 1 PF00009.17.fs Elongation factor Tu GTP binding domain 211.8 1.4e-60 1 PF00679.14.fs Elongation factor G C-terminus 123.5 1e-36 1 PF00679.14.ls Elongation factor G C-terminus 125.4 1.5e-34 1 PF03764.8.fs Elongation factor G, domain IV 96.4 3.2e-27 1 PF03764.8.ls Elongation factor G, domain IV 94.3 3.4e-25 1 PF03144.15.fs Elongation factor Tu domain 2 44.3 2.1e-11 1 PF03144.15.ls Elongation factor Tu domain 2 46.3 9.3e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00009.17.fs 1/1 132 447 .. 1 299 [] 211.8 1.4e-60 PF00009.17.ls 1/1 132 447 .. 1 299 [] 213.6 4.1e-61 PF03144.15.fs 1/1 494 571 .. 1 75 [] 44.3 2.1e-11 PF03144.15.ls 1/1 494 571 .. 1 75 [] 46.3 9.3e-11 PF03764.8.ls 1/1 710 829 .. 1 124 [] 94.3 3.4e-25 PF03764.8.fs 1/1 712 829 .. 9 124 .] 96.4 3.2e-27 PF00679.14.fs 1/1 831 920 .. 1 93 [] 123.5 1e-36 PF00679.14.ls 1/1 831 920 .. 1 93 [] 125.4 1.5e-34 Alignments of top-scoring domains: PF00009.17.fs: domain 1 of 1, from 132 to 447: score 211.8, E = 1.4e-60 *->krhrNigiiGHVDHGKTTLtdrLlyytgaisertleklegeakegge + +rN++ +GH +HGKT +d+L+++t+ + + ++ KIAA0031 132 ELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRK------RYDQDL-- 170 rkgsfklaaviDkmeeEreRGITIksahvsfewkdededgeteakpgkkr +++D + E+eRG+ Iks+ v+ d++ KIAA0031 171 --------CYTDILFTEQERGVGIKSTPVTVVLPDTK------------- 199 gnetTekrhiniIDTPGHvDFtkevirGlaqaDGAiLVVdAveGvmpGfk ++++++ni DTPGHv F+ ev++Gl+ DG++L +dA+eGvm KIAA0031 200 ----GKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVML--- 242 GQTrehlrlArqlgvppiilvVaiNKmDrvgaelklpdvpeelyeeleee T++++++A q+++ + ++ iNK+Dr++ elkl p ++y +l+++ KIAA0031 243 -NTERLIKHAVQERL-AVTVC--INKIDRLILELKL--PPTDAYYKLRHI 286 vrellkpIg.e.df.gvidli............................. v e++ +I+ +++++ i + ++ ++++ + + ++ + ++ KIAA0031 287 VDEVNGLISmYsTDeNLILSPllgnvcfsssqysicftlgsfakiyadtf 336 ...............................lae.vae.ddelmeyyleg ++ + ++ ++ ++ ++++++ +++ ++ + ++++ ++l+++y++ KIAA0031 337 gdinyqefakrlwgdiyfnpktrkftkkaptSSSqRSFvEFILEPLYKIL 386 deipiipiSallgdnidelsiknkLk.kd.dlslvPwykgiSalknkgrd +++ + l ++del+i+ L++++ +l++ P++ ++ ++++ KIAA0031 387 AQVVGDVD-TSLPRTLDELGIH--LTkEElKLNIRPLLRLVCKKFFG--- 430 rgaiptLLeaiddylPsPe<-* ++++ ++++PsP+ KIAA0031 431 -E-FTGFVDMCVQHIPSPK 447 PF00009.17.ls: domain 1 of 1, from 132 to 447: score 213.6, E = 4.1e-61 *->krhrNigiiGHVDHGKTTLtdrLlyytgaisertleklegeakegge + +rN++ +GH +HGKT +d+L+++t+ + + ++ KIAA0031 132 ELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRK------RYDQDL-- 170 rkgsfklaaviDkmeeEreRGITIksahvsfewkdededgeteakpgkkr +++D + E+eRG+ Iks+ v+ d++ KIAA0031 171 --------CYTDILFTEQERGVGIKSTPVTVVLPDTK------------- 199 gnetTekrhiniIDTPGHvDFtkevirGlaqaDGAiLVVdAveGvmpGfk ++++++ni DTPGHv F+ ev++Gl+ DG++L +dA+eGvm KIAA0031 200 ----GKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVML--- 242 GQTrehlrlArqlgvppiilvVaiNKmDrvgaelklpdvpeelyeeleee T++++++A q+++ + ++ iNK+Dr++ elkl p ++y +l+++ KIAA0031 243 -NTERLIKHAVQERL-AVTVC--INKIDRLILELKL--PPTDAYYKLRHI 286 vrellkpIg.e.df.gvidli............................. v e++ +I+ +++++ i + ++ ++++ + + ++ + ++ KIAA0031 287 VDEVNGLISmYsTDeNLILSPllgnvcfsssqysicftlgsfakiyadtf 336 ...............................lae.vae.ddelmeyyleg ++ + ++ ++ ++ ++++++ +++ ++ + ++++ ++l+++y++ KIAA0031 337 gdinyqefakrlwgdiyfnpktrkftkkaptSSSqRSFvEFILEPLYKIL 386 deipiipiSallgdnidelsiknkLk.kd.dlslvPwykgiSalknkgrd +++ + l ++del+i+ L++++ +l++ P++ ++ ++++ KIAA0031 387 AQVVGDVD-TSLPRTLDELGIH--LTkEElKLNIRPLLRLVCKKFFG--- 430 rgaiptLLeaiddylPsPe<-* ++++ ++++PsP+ KIAA0031 431 -E-FTGFVDMCVQHIPSPK 447 PF03144.15.fs: domain 1 of 1, from 494 to 571: score 44.3, E = 2.1e-11 *->GtVatgRvesGtlkkGdeveigg.ngt.kky.vpevtrVtslemfhg + a+gRv sGt++ G+ v ++g+n+t +++++ ++++V++l+ + KIAA0031 494 QFHAFGRVLSGTIHAGQPVKVLGeNYTlEDEeDSQICTVGRLWISVA 540 .ldeavaGdnaGlilagiglkdaaikrGdvla<-* + ++v ++aG+ + + g+++ i + +++ KIAA0031 541 rYHIEVNRVPAGNWVLIEGVDQP-IVKTATIT 571 PF03144.15.ls: domain 1 of 1, from 494 to 571: score 46.3, E = 9.3e-11 *->GtVatgRvesGtlkkGdeveigg.ngt.kky.vpevtrVtslemfhg + a+gRv sGt++ G+ v ++g+n+t +++++ ++++V++l+ + KIAA0031 494 QFHAFGRVLSGTIHAGQPVKVLGeNYTlEDEeDSQICTVGRLWISVA 540 .ldeavaGdnaGlilagiglkdaaikrGdvla<-* + ++v ++aG+ + + g+++ i + +++ KIAA0031 541 rYHIEVNRVPAGNWVLIEGVDQP-IVKTATIT 571 PF03764.8.ls: domain 1 of 1, from 710 to 829: score 94.3, E = 3.4e-25 *->pqVayrETIrkdvkereykhkkQsGgdgqyakviiriePlpgggneF q+ ++k ++++ ++++d a+ i++++P+ +g+n+ KIAA0031 710 VQITWN-----RKK-LGEFFQTKYDWDLLAARSIWAFGPDATGPNIL 750 vdetkG..vGgqiPkEyipavekGfqeamkeGpLaGepvvdvkvtLtDGs vd+t ++v +++ ++++++++Gfq+ ++eGpL++e +++vk++++D++ KIAA0031 751 VDDTLPseVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAV 800 yHeDAVdSseaaFkpAarrAfkeAllkAk<-* + ++++++++p+arr+++ A+l A KIAA0031 801 VAQEPLHRGGGQIIPTARRVVYSAFLMAT 829 PF03764.8.fs: domain 1 of 1, from 712 to 829: score 96.4, E = 3.2e-27 *->IrkdvkereykhkkQsGgdgqyakviiriePlpgggneFvdetkG.. I++ k+ ++++ ++++d a+ i++++P+ +g+n+ vd+t ++ KIAA0031 712 ITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPse 758 vGgqiPkEyipavekGfqeamkeGpLaGepvvdvkvtLtDGsyHeDAVdS v +++ ++++++++Gfq+ ++eGpL++e +++vk++++D++ + ++ KIAA0031 759 VDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHR 808 seaaFkpAarrAfkeAllkAk<-* ++++++p+arr+++ A+l A KIAA0031 809 GGGQIIPTARRVVYSAFLMAT 829 PF00679.14.fs: domain 1 of 1, from 831 to 920: score 123.5, E = 1e-36 *->vlLEPimkVeIevPeeylGdVigdlnkRRGqilgmeqrggtaPlrvv +l+EP++ Ve+++P++ +++V+++l +RRG+++ +++g+ Pl++ KIAA0031 831 RLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGS-PLYT- 875 ikaevPlaEmfgDfatdLRSlTqGrAsfsmeFdhYqevpgviadel<-* ika +P +fg f tdLR++TqG+A+ +F+h+q+vpg ++d+ KIAA0031 876 IKAFIPAIDSFG-FETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKS 920 PF00679.14.ls: domain 1 of 1, from 831 to 920: score 125.4, E = 1.5e-34 *->vlLEPimkVeIevPeeylGdVigdlnkRRGqilgmeqrggtaPlrvv +l+EP++ Ve+++P++ +++V+++l +RRG+++ +++g+ Pl++ KIAA0031 831 RLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGS-PLYT- 875 ikaevPlaEmfgDfatdLRSlTqGrAsfsmeFdhYqevpgviadel<-* ika +P +fg f tdLR++TqG+A+ +F+h+q+vpg ++d+ KIAA0031 876 IKAFIPAIDSFG-FETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKS 920 //