HUGE

Gene/Protein Characteristic Table for KIAA0033

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00377
Accession No. :	D26067
Description :	Transmembrane protein 41B.
HUGO Gene Name :	transmembrane protein 41B (TMEM41B)
Clone Name :	ha02009 [Vector Info]
Flexi ORF Clone :	pF1KSDA0033
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 3269 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2260 bp

Genome contig ID gi51511727r_9159292
PolyA signal sequence
(AATAAA,-30)
+----*----+----*----+----*----+----
TTAAAAATAAAAGAGCTTAGACTCAGTAGGAACTC
Flanking genome sequence
(99995 - 99946)
----+----*----+----*----+----*----+----*----+----*
AGTAGAAGCTTCACTATTTACTCCAGCGTGTGTAAATTGTACTTACTCTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 r 9259287 9292697 7 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 335 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q5BJD5	1.9e-114	100.0	Transmembrane p...	Homo sapiens
BAG64402	7.3e-114	99.7	unnamed protein...	Homo sapiens
Q5RBZ8	3.3e-111	97.6	Transmembrane p...	Pongo abelii
XP_001504961	8.5e-107	94.2	similar to MGC1...	Equus caballus
XP_851421	5.1e-106	93.8	similar to tran...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR015414 173 294 PF09335 SNARE associated Golgi protein

ScanRegExp IPR002114 302 317 PS00589 Phosphotransferase system

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR015414	173	294	PF09335	SNARE associated Golgi protein
ScanRegExp	IPR002114	302	317	PS00589	Phosphotransferase system

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1 VVSGEEVAPEVALAVAL 17 SECONDARY 17

2 96 MSLLILVSIFLSAAFVMFLVYKN 118 PRIMARY 23

3 157 VLVAYFATYIFLQTFAIPGSIFL 179 PRIMARY 23

4 191 LALFLVCLCSGLGASFCYMLSYL 213 PRIMARY 23

5 270 LKVFFIGTFLGVAPPSFVAIKAG 292 SECONDARY 23

6 306 SWNSIFILMILAVLSILPAIFQ 327 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	VVSGEEVAPEVALAVAL	17	SECONDARY	17
2	96	MSLLILVSIFLSAAFVMFLVYKN	118	PRIMARY	23
3	157	VLVAYFATYIFLQTFAIPGSIFL	179	PRIMARY	23
4	191	LALFLVCLCSGLGASFCYMLSYL	213	PRIMARY	23
5	270	LKVFFIGTFLGVAPPSFVAIKAG	292	SECONDARY	23
6	306	SWNSIFILMILAVLSILPAIFQ	327	PRIMARY	22

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: Stanford G3
Primer_f	: TAATCATCCTCAAAGCCTGTT
Primer_r	: TAAATAATCCTCACGCAAAAG
PCR product length	: 155 bp
PCR conditions	: 95 °C15 sec60 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2260 bp
Genome contig ID	gi51511727r_9159292
PolyA signal sequence (AATAAA,-30)	+--------+--------+----*----+---- TTAAAAATAAAAGAGCTTAGACTCAGTAGGAACTC
Flanking genome sequence (99995 - 99946)	----+--------+--------+--------+--------+----* AGTAGAAGCTTCACTATTTACTCCAGCGTGTGTAAATTGTACTTACTCTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	r	9259287	9292697	7	99.3	Perfect prediction

Gene/Protein Characteristic Table for KIAA0033

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information