hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15382662/chunk_1/iprscan-20080501-15382662.nocrc
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Query sequence: KIAA0038
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     59.7    5.6e-16   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     61.6    2.4e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1      46   115 ..     1    74 []    59.7  5.6e-16
PF00076.12.ls   1/1      46   115 ..     1    74 []    61.6  2.4e-15

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 46 to 115: score 59.7, E = 5.6e-16
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                       +VgNLp++t + d+ ++F++  +i s+++vrD  + t++ kGf++V
    KIAA0038    46    AYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRD--KDTDKFKGFCYV 89   

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF+  ++ ++Al  ++G  lg+r lrv   
    KIAA0038    90 EFDEVDSLKEALT-YDGALLGDRSLRV    115  

PF00076.12.ls: domain 1 of 1, from 46 to 115: score 61.6, E = 2.4e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                       +VgNLp++t + d+ ++F++  +i s+++vrD  + t++ kGf++V
    KIAA0038    46    AYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRD--KDTDKFKGFCYV 89   

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF+  ++ ++Al  ++G  lg+r lrv   
    KIAA0038    90 EFDEVDSLKEALT-YDGALLGDRSLRV    115  

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