hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16002052/chunk_1/iprscan-20080501-16002052.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0051 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00616.9.ls GTPase-activator protein for Ras-like GTPase 238.4 1.4e-68 1 PF00616.9.fs GTPase-activator protein for Ras-like GTPase 236.4 5.7e-68 1 PF03836.5.ls RasGAP C-terminus 217.7 2.4e-62 1 PF03836.5.fs RasGAP C-terminus 216.8 4.4e-62 2 PF00612.17.ls IQ calmodulin-binding motif 100.1 6.3e-27 4 PF00612.17.fs IQ calmodulin-binding motif 92.1 1.9e-26 4 PF00307.21.ls Calponin homology (CH) domain 68.9 1.5e-17 1 PF00307.21.fs Calponin homology (CH) domain 67.0 2.7e-17 1 PF00397.16.fs WW domain 26.0 2.6e-06 1 PF00397.16.ls WW domain 28.0 3e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00307.21.fs 1/1 66 181 .. 1 122 [] 67.0 2.7e-17 PF00307.21.ls 1/1 66 181 .. 1 122 [] 68.9 1.5e-17 PF00397.16.ls 1/1 702 731 .. 1 30 [] 28.0 3e-05 PF00397.16.fs 1/1 702 731 .. 1 30 [] 26.0 2.6e-06 PF00612.17.ls 1/4 767 787 .. 1 21 [] 26.2 0.00011 PF00612.17.fs 1/4 767 787 .. 1 21 [] 24.2 3.7e-06 PF00612.17.ls 2/4 797 817 .. 1 21 [] 28.6 2e-05 PF00612.17.fs 2/4 797 817 .. 1 21 [] 26.6 7.4e-07 PF00612.17.fs 3/4 827 847 .. 1 21 [] 24.6 2.9e-06 PF00612.17.ls 3/4 827 847 .. 1 21 [] 26.6 8.1e-05 PF00612.17.ls 4/4 857 877 .. 1 21 [] 18.6 0.021 PF00616.9.ls 1/1 1046 1258 .. 1 200 [] 238.4 1.4e-68 PF00616.9.fs 1/1 1046 1258 .. 1 200 [] 236.4 5.7e-68 PF03836.5.ls 1/1 1472 1604 .. 1 149 [] 217.7 2.4e-62 PF03836.5.fs 2/2 1472 1604 .. 1 149 [] 215.8 8.8e-62 Alignments of top-scoring domains: PF00307.21.fs: domain 1 of 1, from 66 to 181: score 67.0, E = 2.7e-17 *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca + +e+ rW++++l+++ + + t++++ ++ +G+ L++ KIAA0051 66 CHLEEAKRWMEACLGEDLP----------PTTELEEGLR-NGVYLAK 101 LlnklrPglidkkkv.........pslsrfdkleNlnlaldaaekeGlgi L n ++P+ + +kk+ ++++++ + + f++++N+ + l+a++++Gl++ KIAA0051 102 LGNFFSPKVVSLKKIydreqtrykATGLHFRHTDNVIQWLNAMDEIGLPK 151 ilvlidpeDivegnpdPDeklvltllwqLirrfq<-* +++ ++ Di+++++ + + ++++L ++ KIAA0051 152 -IFYPETTDIYDRKN---MPRCIYCIHALSLYLF 181 PF00307.21.ls: domain 1 of 1, from 66 to 181: score 68.9, E = 1.5e-17 *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca + +e+ rW++++l+++ + + t++++ ++ +G+ L++ KIAA0051 66 CHLEEAKRWMEACLGEDLP----------PTTELEEGLR-NGVYLAK 101 LlnklrPglidkkkv.........pslsrfdkleNlnlaldaaekeGlgi L n ++P+ + +kk+ ++++++ + + f++++N+ + l+a++++Gl++ KIAA0051 102 LGNFFSPKVVSLKKIydreqtrykATGLHFRHTDNVIQWLNAMDEIGLPK 151 ilvlidpeDivegnpdPDeklvltllwqLirrfq<-* +++ ++ Di+++++ + + ++++L ++ KIAA0051 152 -IFYPETTDIYDRKN---MPRCIYCIHALSLYLF 181 PF00397.16.ls: domain 1 of 1, from 702 to 731: score 28.0, E = 3e-05 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* ++ W++++ G++YY+N +T++ W+ P KIAA0051 702 NNSKWVKHWVKGGYYYYHNLETQEGGWDEP 731 PF00397.16.fs: domain 1 of 1, from 702 to 731: score 26.0, E = 2.6e-06 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* ++ W++++ G++YY+N +T++ W+ P KIAA0051 702 NNSKWVKHWVKGGYYYYHNLETQEGGWDEP 731 PF00612.17.ls: domain 1 of 4, from 767 to 787: score 26.2, E = 0.00011 *->rraaikIQaawRGylaRkryk<-* + ++++Qa++RGyl+R++++ KIAA0051 767 EGLITRLQARCRGYLVRQEFR 787 PF00612.17.fs: domain 1 of 4, from 767 to 787: score 24.2, E = 3.7e-06 *->rraaikIQaawRGylaRkryk<-* + ++++Qa++RGyl+R++++ KIAA0051 767 EGLITRLQARCRGYLVRQEFR 787 PF00612.17.ls: domain 2 of 4, from 797 to 817: score 28.6, E = 2e-05 *->rraaikIQaawRGylaRkryk<-* a+++IQ++wRGy+++k+y+ KIAA0051 797 IPAITCIQSQWRGYKQKKAYQ 817 PF00612.17.fs: domain 2 of 4, from 797 to 817: score 26.6, E = 7.4e-07 *->rraaikIQaawRGylaRkryk<-* a+++IQ++wRGy+++k+y+ KIAA0051 797 IPAITCIQSQWRGYKQKKAYQ 817 PF00612.17.fs: domain 3 of 4, from 827 to 847: score 24.6, E = 2.9e-06 *->rraaikIQaawRGylaRkryk<-* ++ ++kIQ+ R+++aRkry+ KIAA0051 827 KDEVVKIQSLARMHQARKRYR 847 PF00612.17.ls: domain 3 of 4, from 827 to 847: score 26.6, E = 8.1e-05 *->rraaikIQaawRGylaRkryk<-* ++ ++kIQ+ R+++aRkry+ KIAA0051 827 KDEVVKIQSLARMHQARKRYR 847 PF00612.17.ls: domain 4 of 4, from 857 to 877: score 18.6, E = 0.021 *->rraaikIQaawRGylaRkryk<-* +ikIQa++R+ +aR yk KIAA0051 857 INDIIKIQAFIRANKARDDYK 877 PF00616.9.ls: domain 1 of 1, from 1046 to 1258: score 238.4, E = 1.4e-68 *->llsqlieeEieektsdpntlFRgNslatkllsaYlrr.vgqeYLkdt l++ +++eEi++k ++ +++ gN++++k++ +++r +gq+ L+++ KIAA0051 1046 LFKTALQEEIKSKVDQIQEIVTGNPTVIKMVVSFNRGaRGQNALRQI 1092 LgplireiveskedlslElDPssklydgeineee.qtg.ps.lp...... L p+++ei+++k l++ +DP +y+++ n++e+qtg+ s+lp + +++ KIAA0051 1093 LAPVVKEIMDDKS-LNIKTDP-VDIYKSWVNQMEsQTGeASkLPydvtpe 1140 ...........leknlenLreycekfldaIisSvdklPpelryickqire + +++ +++l+++++n+r+ ++kfl+aI+sSvdk+P+++r i+k+++ KIAA0051 1141 qalaheevktrLDSSIRNMRAVTDKFLSAIVSSVDKIPYGMRFIAKVLKD 1190 svekkfpdakqdeaerlsavggflFLRFlfcPAivsPelfglveamvtss s+++kfpda +de l+++g++l++R+ ++PAiv+P++f+++ ++s+ KIAA0051 1191 SLHEKFPDAGEDEL--LKIIGNLLYYRY-MNPAIVAPDAFDII---DLSA 1234 edhpsprarRnLtliaKvLQnlan<-* ++++ +rRnL +iaK+LQ++a+ KIAA0051 1235 GGQLTTDQRRNLGSIAKMLQHAAS 1258 PF00616.9.fs: domain 1 of 1, from 1046 to 1258: score 236.4, E = 5.7e-68 *->llsqlieeEieektsdpntlFRgNslatkllsaYlrr.vgqeYLkdt l++ +++eEi++k ++ +++ gN++++k++ +++r +gq+ L+++ KIAA0051 1046 LFKTALQEEIKSKVDQIQEIVTGNPTVIKMVVSFNRGaRGQNALRQI 1092 LgplireiveskedlslElDPssklydgeineee.qtg.ps.lp...... L p+++ei+++k l++ +DP +y+++ n++e+qtg+ s+lp + +++ KIAA0051 1093 LAPVVKEIMDDKS-LNIKTDP-VDIYKSWVNQMEsQTGeASkLPydvtpe 1140 ...........leknlenLreycekfldaIisSvdklPpelryickqire + +++ +++l+++++n+r+ ++kfl+aI+sSvdk+P+++r i+k+++ KIAA0051 1141 qalaheevktrLDSSIRNMRAVTDKFLSAIVSSVDKIPYGMRFIAKVLKD 1190 svekkfpdakqdeaerlsavggflFLRFlfcPAivsPelfglveamvtss s+++kfpda +de l+++g++l++R+ ++PAiv+P++f+++ ++s+ KIAA0051 1191 SLHEKFPDAGEDEL--LKIIGNLLYYRY-MNPAIVAPDAFDII---DLSA 1234 edhpsprarRnLtliaKvLQnlan<-* ++++ +rRnL +iaK+LQ++a+ KIAA0051 1235 GGQLTTDQRRNLGSIAKMLQHAAS 1258 PF03836.5.ls: domain 1 of 1, from 1472 to 1604: score 217.7, E = 2.4e-62 *->sLkelkekilknlkeLEelGlvqseVkNkYqsfindIAldirNlrri +L+e+keki+++lk+L+elG+v+++ NkYq++indIA+dirN+rr+ KIAA0051 1472 TLQEKKEKIQTGLKKLTELGTVDPK--NKYQELINDIARDIRNQRRY 1516 reqrkaEldalqqtlraLrekreyLdeqlarYgeYLktcletlqrAKDfk r++rkaEl++lqqt++aL++k+++++eq+++Y++Y+ktcl++l++ KIAA0051 1517 RQRRKAELVKLQQTYAALNSKATFYGEQVDYYKSYIKTCLDNLAS----- 1561 tkkkskfkskkkevkkvrkekgskkksksvKysakkLhkkGVlleitgpq k+k++kk+r++kg+k+k++s+Ky+a++Lh+kGVllei+++q KIAA0051 1562 ---------KGKVSKKPREMKGKKSKKISLKYTAARLHEKGVLLEIEDLQ 1602 ln<-* +n KIAA0051 1603 VN 1604 PF03836.5.fs: domain 2 of 2, from 1472 to 1604: score 215.8, E = 8.8e-62 *->sLkelkekilknlkeLEelGlvqseVkNkYqsfindIAldirNlrri +L+e+keki+++lk+L+elG+v+++ NkYq++indIA+dirN+rr+ KIAA0051 1472 TLQEKKEKIQTGLKKLTELGTVDPK--NKYQELINDIARDIRNQRRY 1516 reqrkaEldalqqtlraLrekreyLdeqlarYgeYLktcletlqrAKDfk r++rkaEl++lqqt++aL++k+++++eq+++Y++Y+ktcl++l++ KIAA0051 1517 RQRRKAELVKLQQTYAALNSKATFYGEQVDYYKSYIKTCLDNLAS----- 1561 tkkkskfkskkkevkkvrkekgskkksksvKysakkLhkkGVlleitgpq k+k++kk+r++kg+k+k++s+Ky+a++Lh+kGVllei+++q KIAA0051 1562 ---------KGKVSKKPREMKGKKSKKISLKYTAARLHEKGVLLEIEDLQ 1602 ln<-* +n KIAA0051 1603 VN 1604 //