# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha01319mrp1.fasta.huge -Q ../query/KIAA0052.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0052, 1046 aa
 vs ./tmplib.23147 library

1986459 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.0401+/-0.00497; mu= 15.5983+/- 0.339
 mean_var=93.6161+/-22.509, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.132556

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0788  ( 2026 res)   hk05526s2                  (2026)  236 56.7 3.8e-08


>>KIAA0788  ( 2026 res)   hk05526s2                       (2026 aa)
 initn: 256 init1: 161 opt: 236  Z-score: 238.1  bits: 56.7 E(): 3.8e-08
Smith-Waterman score: 357;  25.536% identity (53.219% similar) in 466 aa overlap (139-573:1214-1622)

      110       120       130       140       150        160       
KIAA00 ETVEGCTHEVALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDN-NQSVLVSAHT
                                     ..:: .. .: .... : : ...:.:.: :
KIAA07 KYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFNTVYNSDDNVFVGAPT
          1190      1200      1210       1220      1230      1240  

       170       180         190       200       210               
KIAA00 SAGKTVCAEYAIALALREKQ--RVIFTSPIKALSNQKYREMYEEFQD-----VGLMTG--
       ..:::.:::.::   : ...  : .. .:..::..: : . ::.:::     : :.::  
KIAA07 GSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGET
           1250      1260      1270      1280      1290      1300  

        220       230         240       250       260       270    
KIAA00 --DVTINPTASCLVMTTEI--LRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWE---
         :. .   .. .. : :   . :  ..  . ....   . ::.: .  .: : : :   
KIAA07 STDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLI-GGENGPVLEVIC
           1310      1320      1330      1340       1350      1360 

                   280       290       300        310       320    
KIAA00 ------ETIILLPDNVHYVFLSATIPNARQFAEWI-CHLHKQPCHVIYTDYRPTPLQHYI
              . :  :  .. : ::... ::.. :.:. :         .. . ::.::.   
KIAA07 SRMRYISSQIERP--IRIVALSSSLSNAKDVAHWLGC--SATSTFNFHPNVRPVPLE---
            1370        1380      1390        1400      1410       

          330       340       350       360       370       380    
KIAA00 FPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKM
              ::.          ..:: .    :  . .::            :  :.. .  
KIAA07 -------LHI----------QGFNISHTQTRLLS-MAK------------P--VYHAITK
                          1420      1430                     1440  

          390       400       410       420       430       440    
KIAA00 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQ
          .  .:::.:  :.:.      ..: .:. :     . .. :   . :   :   .: 
KIAA07 HSPK--KPVIVFVPSRKQT-----RLTAIDILTTCAADIQRQRF---LHC--TEKDLIPY
             1450           1460      1470         1480        1490

          450            460       470       480       490         
KIAA00 VEHVLP-LLKR----GIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPART
       .:..    ::.    :.:  : :: :. .. .: ::: : :... :....  :.:. :. 
KIAA07 LEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHL
             1500      1510      1520      1530      1540      1550

     500       510       520         530       540       550       
KIAA00 VLFTNARKFDGKDFRWISSGEY--IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLK
       :.. ... ..::   ...   :  .:: :.:.:  .::.:  ..: . . .  . : :  
KIAA07 VIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY-
             1560      1570      1580      1590      1600          

       560       570       580       590       600       610       
KIAA00 GSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYN
          .::    :: . :                                            
KIAA07 ---EPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGI
       1610      1620      1630      1640      1650      1660      




1046 residues in 1 query   sequences
1986459 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:06:04 2008 done: Thu Dec 18 15:06:05 2008
 Total Scan time:  0.680 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]