hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16020374/chunk_1/iprscan-20080501-16020374.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0052 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08148.2.ls DSHCT (NUC185) domain 402.0 8.3e-118 1 PF08148.2.fs DSHCT (NUC185) domain 400.0 3.3e-117 1 PF00270.19.ls DEAD/DEAH box helicase 113.2 7e-31 1 PF00270.19.fs DEAD/DEAH box helicase 111.5 9.3e-31 1 PF00271.21.fs Helicase conserved C-terminal domain 48.7 1.3e-13 1 PF00271.21.ls Helicase conserved C-terminal domain 50.7 4.7e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00270.19.fs 1/1 145 296 .. 1 213 [] 111.5 9.3e-31 PF00270.19.ls 1/1 145 296 .. 1 213 [] 113.2 7e-31 PF00271.21.fs 1/1 448 532 .. 1 76 [] 48.7 1.3e-13 PF00271.21.ls 1/1 448 532 .. 1 76 [] 50.7 4.7e-12 PF08148.2.fs 1/1 858 1046 .] 1 197 [] 400.0 3.3e-117 PF08148.2.ls 1/1 858 1046 .] 1 197 [] 402.0 8.3e-118 Alignments of top-scoring domains: PF00270.19.fs: domain 1 of 1, from 145 to 296: score 111.5, E = 9.3e-31 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq + Q+eai + ++++vlv+A T +GKT +++ +i al +++ KIAA0052 145 DAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREkQ---- 187 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv ++++ +P ++L +Q y+e+ + ++ v KIAA0052 188 ------------RVIFTSPIKALSNQKYREMYEEFQ------------DV 213 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg +l++G+++i++ + lv+T + L ++l + KIAA0052 214 GLMTGDVTINPT---------------ASCLVMTTEILRSML-------Y 241 RF x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx a.sldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlp ++s ++++ ++++DE+h + d +g ++ee + lp + KIAA0052 242 RgSEVMREVAWVIFDEIHYMRDS-ERGVVWEETIILLP-DN--------- 280 RF xxxxxxxxxxxxxxxxxx nrqtllfSATlprnvedl<-* ++ +++SAT+p n++ + KIAA0052 281 -VHYVFLSATIP-NARQF 296 PF00270.19.ls: domain 1 of 1, from 145 to 296: score 113.2, E = 7e-31 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq + Q+eai + ++++vlv+A T +GKT +++ +i al +++ KIAA0052 145 DAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREkQ---- 187 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv ++++ +P ++L +Q y+e+ + ++ v KIAA0052 188 ------------RVIFTSPIKALSNQKYREMYEEFQ------------DV 213 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg +l++G+++i++ + lv+T + L ++l + KIAA0052 214 GLMTGDVTINPT---------------ASCLVMTTEILRSML-------Y 241 RF x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx a.sldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlp ++s ++++ ++++DE+h + d +g ++ee + lp + KIAA0052 242 RgSEVMREVAWVIFDEIHYMRDS-ERGVVWEETIILLP-DN--------- 280 RF xxxxxxxxxxxxxxxxxx nrqtllfSATlprnvedl<-* ++ +++SAT+p n++ + KIAA0052 281 -VHYVFLSATIP-NARQF 296 PF00271.21.fs: domain 1 of 1, from 448 to 532: score 48.7, E = 1.3e-13 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD l++++ ++ +hGgl + +e i+ F +g +k L+aT +++Gi+ KIAA0052 448 VLpLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGIN 494 ipdvnlVInydl.........pwnpesyiQRiGRaGRaG<-* p+ ++V + ++++ ++++ ++ + +yiQ+ GRaGR G KIAA0052 495 MPA-RTVLFTNArkfdgkdfrWISSGEYIQMSGRAGRRG 532 PF00271.21.ls: domain 1 of 1, from 448 to 532: score 50.7, E = 4.7e-12 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD l++++ ++ +hGgl + +e i+ F +g +k L+aT +++Gi+ KIAA0052 448 VLpLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGIN 494 ipdvnlVInydl.........pwnpesyiQRiGRaGRaG<-* p+ ++V + ++++ ++++ ++ + +yiQ+ GRaGR G KIAA0052 495 MPA-RTVLFTNArkfdgkdfrWISSGEYIQMSGRAGRRG 532 PF08148.2.fs: domain 1 of 1, from 858 to 1046: score 400.0, E = 3.3e-117 *->RlrVLkrLGyiDdddvVtlKGRvACEIssgdELllTElifsgffndL R+rVL+rLG+ ++ dv+++KGRvACEIss dELllTE++f+g fndL KIAA0052 858 RKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL 904 ePeeiAALLScfVfeektgDlwcneeeppkltpeLeealkrlqeiarkva ++e++ ALLScfVf+e+++ e+ pklt++L+ +l+++qe+a+++a KIAA0052 905 SAEQATALLSCFVFQENSS-----EM--PKLTEQLAGPLRQMQECAKRIA 947 kvqeeckvpevdeeeyveslrfgLMeVVYeWArGasFaeIcemTdvdEGs kv+ e k+ e+dee y++s++++LM+VVY WA Ga+Fa Ic+mTdv+EGs KIAA0052 948 KVSAEAKL-EIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGS 996 IVRtirRLdEllrqvrnAAriIGnssLeeKmeeAselIkRDIVFaASLYL I+R++rRL+Ellrq+++AA++IGn++Le+K++e + +IkRDIVFaASLYL KIAA0052 997 IIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1046 <-* KIAA0052 - - PF08148.2.ls: domain 1 of 1, from 858 to 1046: score 402.0, E = 8.3e-118 *->RlrVLkrLGyiDdddvVtlKGRvACEIssgdELllTElifsgffndL R+rVL+rLG+ ++ dv+++KGRvACEIss dELllTE++f+g fndL KIAA0052 858 RKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL 904 ePeeiAALLScfVfeektgDlwcneeeppkltpeLeealkrlqeiarkva ++e++ ALLScfVf+e+++ e+ pklt++L+ +l+++qe+a+++a KIAA0052 905 SAEQATALLSCFVFQENSS-----EM--PKLTEQLAGPLRQMQECAKRIA 947 kvqeeckvpevdeeeyveslrfgLMeVVYeWArGasFaeIcemTdvdEGs kv+ e k+ e+dee y++s++++LM+VVY WA Ga+Fa Ic+mTdv+EGs KIAA0052 948 KVSAEAKL-EIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGS 996 IVRtirRLdEllrqvrnAAriIGnssLeeKmeeAselIkRDIVFaASLYL I+R++rRL+Ellrq+++AA++IGn++Le+K++e + +IkRDIVFaASLYL KIAA0052 997 IIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1046 <-* KIAA0052 - - //