hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16020374/chunk_1/iprscan-20080501-16020374.nocrc
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Query sequence: KIAA0052
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 128.5      7e-34   1
SM00490                                                  79.5      4e-19   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     140   323 ..     1   219 []   128.5    7e-34
SM00490      1/1     443   532 ..     1    86 []    79.5    4e-19

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 140 to 323: score 128.5, E = 7e-34
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                       +  l + Q+eai+ + ++++v++ a+T +GKT+++ ++++ +l++ 
    KIAA0052   140    YPfILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALRE- 185  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                            + rv++++P ++L +Q ++e+ +++           + vgl
    KIAA0052   186 ---------KQRVIFTSPIKALSNQKYREMYEEF-----------QDVGL 215  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                   ++G+            ++  +  lv+T+++L+++l +g+   ++++ +vi
    KIAA0052   216 MTGdV----------TINPTASCLVMTTEILRSMLyRGS-EVMrEVAWVI 254  

                   lDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATppeienllk
                   +DE+H + d+       +g ++e+ + +lp n++ ++lSAT+p+ + +++
    KIAA0052   255 FDEIHYMRDS------ERGVVWEeTIILLPDNVHYVFLSATIPNARQFAE 298  

                   lflnlpelfpnpvfisvgf.tlepieqf<-*
                    +++l+   ++p +++  + ++ p++++   
    KIAA0052   299 WICHLH---KQPCHVIYTDyRPTPLQHY    323  

SM00490: domain 1 of 1, from 443 to 532: score 79.5, E = 4e-19
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                       ++++ L  l    + +++++HGgl +  +e i+  F +g ik L+a
    KIAA0052   443    PQVEHVLPLL----KRGIGIHHGGLLPILKETIEILFSEGLIKALFA 485  

                   TdvaerGlDipgvdlVInydl.........pwspasyiQRiGRaGRaG<-
                   T ++++G+++p +++V + ++++ ++++ +++s  +yiQ++GRaGR G  
    KIAA0052   486 TETFAMGINMP-ARTVLFTNArkfdgkdfrWISSGEYIQMSGRAGRRG   532  

                   *
                    
    KIAA0052     -   -    

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