hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16140382/chunk_1/iprscan-20080501-16140382.nocrc
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Query sequence: KIAA0059
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00132                                                 235.5    4.4e-66   4
SM00153                                                  76.8    2.6e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00132    1/4      44    95 ..     1    52 []    48.9  6.6e-10
SM00132    2/4     103   155 ..     1    52 []    57.4  1.8e-12
SM00132    3/4     171   222 ..     1    52 []    73.9    2e-17
SM00132    4/4     230   282 ..     1    52 []    55.3  7.7e-12
SM00153    1/1     689   724 .]     1    36 []    76.8  2.6e-18

Alignments of top-scoring domains:
SM00132: domain 1 of 4, from 44 to 95: score 48.9, E = 6.6e-10
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg.tffekdgk
                      +C++Cg+p  g evlr+  k++H +CF+C +C++ L+ ++ff k+g+
    KIAA0059    44    HCHKCGEPCKG-EVLRVQTKHFHIKCFTCKVCGCDLAQgGFFIKNGE 89   

                   lyCkdc<-*
                    +C  +   
    KIAA0059    90 YLCTLD    95   

SM00132: domain 2 of 4, from 103 to 155: score 57.4, E = 1.8e-12
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg..tffekdg
                      +C+gCg++++g ev++algk++Hp+CF C++Ck+p+ ++++  + + 
    KIAA0059   103    RCHGCGEFVEG-EVVTALGKTYHPNCFACTICKRPFPPgdRVTFNGR 148  

                   klyCkdc<-*
                     +C+ c   
    KIAA0059   149 DCLCQLC    155  

SM00132: domain 3 of 4, from 171 to 222: score 73.9, E = 2e-17
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLggtffekdgkl
                       CagCg+ I   + l al+k wH  CFkC  C+k L+g++++kdg +
    KIAA0059   171    NCAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGAP 217  

                   yCkdc<-*
                   yC+++   
    KIAA0059   218 YCEKD    222  

SM00132: domain 4 of 4, from 230 to 282: score 55.3, E = 7.7e-12
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg..tffekdg
                      kC +C+++Itg +vl+a++k++Hp+C +Cs+C++ ++++++ + ++ 
    KIAA0059   230    KCEACHQFITG-KVLEAGDKHYHPSCARCSRCNQMFTEgeEMYLQGS 275  

                   klyCkdc<-*
                   ++  +dc   
    KIAA0059   276 TVWHPDC    282  

SM00153: domain 1 of 1, from 689 to 724: score 76.8, E = 2.6e-18
                   *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
                      +L +e F+e+FgM+++EF++LPlW++n++KKk++LF   
    KIAA0059   689    HLAPEVFREIFGMSIQEFDRLPLWRRNDMKKKAKLF    724  

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