hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16190521/chunk_1/iprscan-20080501-16190521.nocrc
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Query sequence: KIAA0062
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02535.12.ls ZIP Zinc transporter                           238.4    1.5e-68   1
PF02535.12.fs ZIP Zinc transporter                           235.8    8.8e-68   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02535.12.fs   1/2     190   305 ..     1   132 [.    72.6  1.2e-18
PF02535.12.ls   1/1     190   522 ..     1   360 []   238.4  1.5e-68
PF02535.12.fs   2/2     365   522 ..   185   360 .]   163.2  6.2e-46

Alignments of top-scoring domains:
PF02535.12.fs: domain 1 of 2, from 190 to 305: score 72.6, E = 1.2e-18
                   *->lllkiyaifallitsliglllplliprisklrpesrsskllsfllaF
                      ++++ y+++ ++++sl++ll++ ++p ++k      +++ll+++ a+
    KIAA0062   190    VEVWGYGLLCVTVISLCSLLGASVVPFMKK----TFYKRLLLYFIAL 232  

                   AaGvlLgtaFlHLLPealealesspclgslhgpwhefpfaglivllGffl
                   A+G+l + a++ L+Pea++++        + + ++  +++  +v++Gf+l
    KIAA0062   233 AIGTLYSNALFQLIPEAFGFN--------PLEDYY--VSKSAVVFGGFYL 272  

                   vllleklltllkgrgdghshghdhghskehshlvp<-*
                   ++++ek+l++l ++  +  h+h+h+h+++ s +++   
    KIAA0062   273 FFFTEKILKILLKQ--KNEHHHGHSHYASESLPSK    305  

PF02535.12.ls: domain 1 of 1, from 190 to 522: score 238.4, E = 1.5e-68
                   *->lllkiyaifallitsliglllplliprisklrpesrsskllsfllaF
                      ++++ y+++ ++++sl++ll++ ++p ++k      +++ll+++ a+
    KIAA0062   190    VEVWGYGLLCVTVISLCSLLGASVVPFMKK----TFYKRLLLYFIAL 232  

                   AaGvlLgtaFlHLLPealealesspclgslhgpwhefpfaglivllGffl
                   A+G+l + a++ L+Pea++++        + + ++  +++  +v++Gf+l
    KIAA0062   233 AIGTLYSNALFQLIPEAFGFN--------PLEDYY--VSKSAVVFGGFYL 272  

                   vllleklltllkgrgdghshghdhghskehshlvpdees.ake.......
                   ++++ek+l++l ++  +  h+h+h+h+++ s +++    + + ++ ++++
    KIAA0062   273 FFFTEKILKILLKQ--KNEHHHGHSHYASESLPSKKDQEeGVMeklqngd 320  

                   ..........gnhdeaesaahesdvennhvvhhghheghhhhhhegpekg
                    ++  +++ + + d+ ++ ++e+   ++++v+     ++ ++ + g   +
    KIAA0062   321 ldhmipqhcsSELDGKAPMVDEKVIVGSLSVQDLQASQSACYWLKGVRYS 370  

                   esdkesglrvadieiilsqflaawllllglilHsffeGLAiGasfsssts
                         ++ +            aw+++l+++lH+f++GLAiGasf++s  
    KIAA0062   371 ------DIGTL-----------AWMITLSDGLHNFIDGLAIGASFTVSVF 403  

                   lgislfiAvlfHklpeglGlgaiLlqagfsrkkavlPWvlqllfalttpi
                   +gis+++A+l+ ++p++lG+++iLl ag+s  +a++    ++l+a+ +++
    KIAA0062   404 QGISTSVAILCEEFPHELGDFVILLNAGMSIQQALF---FNFLSACCCYL 450  

                   GiaiGigimrtsydsnspgadivsgiLlafaAGtflYvalvelLPeelan
                   G a+Gi+           g+ ++  +++a+a+G+flY++l ++ Pe+ + 
    KIAA0062   451 GLAFGILA----------GSHFSANWIFALAGGMFLYISLADMFPEMNEV 490  

                   seedsgqsslkl.qllqllalllGfalMalia<-*
                    +ed++ +s+  ++++q+l+ll+Gf +M+++    
    KIAA0062   491 CQEDERKGSILIpFIIQNLGLLTGFTIMVVLT    522  

PF02535.12.fs: domain 2 of 2, from 365 to 522: score 163.2, E = 6.2e-46
                   *->sglrvadieiilsqflaawllllglilHsffeGLAiGasfssstslg
                      +g+r++di  +      aw+++l+++lH+f++GLAiGasf++s  +g
    KIAA0062   365    KGVRYSDIGTL------AWMITLSDGLHNFIDGLAIGASFTVSVFQG 405  

                   islfiAvlfHklpeglGlgaiLlqagfsrkkavlPWvlqllfalttpiGi
                   is+++A+l+ ++p++lG+++iLl ag+s  +a++    ++l+a+ +++G 
    KIAA0062   406 ISTSVAILCEEFPHELGDFVILLNAGMSIQQALF---FNFLSACCCYLGL 452  

                   aiGigimrtsydsnspgadivsgiLlafaAGtflYvalvelLPeelanse
                   a+Gi+           g+ ++  +++a+a+G+flY++l ++ Pe+ +  +
    KIAA0062   453 AFGILA----------GSHFSANWIFALAGGMFLYISLADMFPEMNEVCQ 492  

                   edsgqsslkl.qllqllalllGfalMalia<-*
                   ed++ +s+  ++++q+l+ll+Gf +M+++    
    KIAA0062   493 EDERKGSILIpFIIQNLGLLTGFTIMVVLT    522  

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