hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16204719/chunk_1/iprscan-20080501-16204719.nocrc
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Query sequence: KIAA0063
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02099.8.fs Josephin                                        92.3    4.9e-26   1
PF02099.8.ls Josephin                                        67.8    3.2e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02099.8.fs   1/1      34   182 ..     1   159 [.    92.3  4.9e-26
PF02099.8.ls   1/1      34   208 ..     1   205 []    67.8  3.2e-17

Alignments of top-scoring domains:
PF02099.8.fs: domain 1 of 1, from 34 to 182: score 92.3, E = 4.9e-26
                   *->iesIFhErQelqLCaqHcLNnLLQDkdfktkellnlaaqldetedqr
                         I+hE+Q+  LCa+H+LNn +QD  ++t++ l  + q +  + + 
    KIAA0063    34    --QIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMV 78   

                   leeatptSevlrpflntisgNmdesgffsiqvlkkalkvwslkligiesp
                           +          gN+d+++ + ++  k+   vw +k+  +  +
    KIAA0063    79 TPHKKSMLG---------NGNYDVNVIMAALQTKGYEAVWWDKRRDVGVI 119  

                   dlddADTLkgdpLnvrvficnG...LWrke.HWfvvRKlgkqWFnLnSvl
                   +l      +g  +n ++  c G+ +L +k++HW+ vR  g+  +nL+S l
    KIAA0063   120 ALTN---VMGFIMNLPSSLCWGplkLPLKRqHWICVREVGGAYYNLDSKL 166  

                   vgPkLlsDDtyvrlFL<-*
                     P+ +    ++r FL   
    KIAA0063   167 KMPEWIGGESELRKFL    182  

PF02099.8.ls: domain 1 of 1, from 34 to 208: score 67.8, E = 3.2e-17
                   *->iesIFhErQelqLCaqHcLNnLLQDkdfktkellnlaaqldetedqr
                         I+hE+Q+  LCa+H+LNn +QD  ++t++ l  + q +  + + 
    KIAA0063    34    --QIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMV 78   

                   leeatptSevlrpflntisgNmdesgffsiqvlkkalkvwslkligiesp
                           +          gN+d+++ + ++  k+   vw +k+  +  +
    KIAA0063    79 TPHKKSMLG---------NGNYDVNVIMAALQTKGYEAVWWDKRRDVGVI 119  

                   dlddADTLkgdpLnvrvficnG...LWrke.HWfvvRKlgkqWFnLnSvl
                   +l      +g  +n ++  c G+ +L +k++HW+ vR  g+  +nL+S l
    KIAA0063   120 ALTN---VMGFIMNLPSSLCWGplkLPLKRqHWICVREVGGAYYNLDSKL 166  

                   vgPkLlsDDtyvrlFLdQvlsEgysIfvvkgllpnaeaddLlslirVvit
                     P+ +    ++r FL   l              n+e      l  Vv+ 
    KIAA0063   167 KMPEWIGGESELRKFLKHHLR-----------GKNCE------LLLVVP- 198  

                   HrpkLiGkksak<-*
                       +   +s +   
    KIAA0063   199 --EEVEAHQSWR    208  

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