hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16290385/chunk_1/iprscan-20080501-16290385.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0068 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05994.2.ls Cytoplasmic Fragile-X interacting family 3391.9 0 1 PF05994.2.fs Cytoplasmic Fragile-X interacting family 3389.6 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05994.2.fs 1/1 19 1271 .] 1 1293 [] 3389.6 0 PF05994.2.ls 1/1 19 1271 .] 1 1293 [] 3391.9 0 Alignments of top-scoring domains: PF05994.2.fs: domain 1 of 1, from 19 to 1271: score 3389.6, E = 0 *->MtakvTldDAlSNVelLdeLalPDdqPcIEarplsilYraNFDTNFE M a+vTl+DAlSNV+lL+eL+lPD+qPcIE++p+s+lY+ NF TNFE KIAA0068 19 MAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQPNFNTNFE 65 DRnaFVTGIAkYiEeATrHaqlNdmLeEglkhAvmlYTWRcCSRAiPqaK DRnaFVTGIA+YiE+AT+H+++N+mLeEg+++AvmlYTWR+CSRAiPq+K KIAA0068 66 DRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVK 115 sNeQPNRvEIyEktVEVLkPEVsKLlkFMyFqrkAIerFceEVkRLCHaE +NeQPNRvEIyEktVEVL+PEV+KL++FMyFqr AIerFc+EV+RLCHaE KIAA0068 116 CNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAE 165 kRkDFVSEAYLLTLGkFINMFAVLDELKNMKaSvKNDfStyrRAaQFLka +RkDFVSEAYL TLGkFINMFAVLDELKNMK+SvKND+S+y+RAaQFL++ KIAA0068 166 RRKDFVSEAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRK 215 MsDtqavqesQNLSMFLAtqNkIkddlkdqletIeGYEeLLaDvVNICvh M+D+q++qesQNLSMFLA++NkI++ l++qle+I GYEeLLaD+VN Cv+ KIAA0068 216 MADPQSIQESQNLSMFLANHNKITQSLQQQLEVISGYEELLADIVNLCVD 265 mYEtklYLtPeEKHMlvKVmgFgLFLMDgdaaNiaKLDqKKrislsriDk +YE+++YLtP+EKHMl+KVmgFgL+LMDg ++Ni+KLD+KKri+ls+iDk KIAA0068 266 YYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRINLSKIDK 315 iFKtLeVVPLfGDMQIepfayikrSsHYeenkSKWpLsdkesispqvniv FK+L+VVPLfGDMQIe+++yik+S+HYeenkS+W+ ++++ spq+ni+ KIAA0068 316 YFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWT-CTSSGSSPQYNIC 364 eklqqIReDHvkYiselArysNevavtGsGlde.qksDsEnReitdLALr e++ qIReDH+++iselArysN+++vtGsG e qk D+E+R ++dLAL KIAA0068 365 EQMIQIREDHMRFISELARYSNSEVVTGSGRQEaQKTDAEYRKLFDLALQ 414 GlQLLskWsaaVvEvySWKLlhPTdkkdNkeCPeeAEEYERATRYNYtse GlQLLs+Wsa+V+EvySWKL+hPTdk Nk+CP AEEYERATRYNYtse KIAA0068 415 GLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDSAEEYERATRYNYTSE 464 EKfALievIAMIKGLQvllgriEsvlseaiRktiYveLQdFvqltlrEPL EKfAL+evIAMIKGLQvl+gr+Esv++ aiR t+Y++LQdF q+tlrEPL KIAA0068 465 EKFALVEVIAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPL 514 rkAVkkKKdllaSilqsvrdtisDwekgleptdDvkGkkkspaakGdkdp r+A+kkKK+++ S+lq++r+t++Dwe g ep +D pa++G+kdp KIAA0068 515 RQAIKKKKNVIQSVLQAIRKTVCDWETGHEPFND-------PALRGEKDP 557 sggfdIrvPRrtvgPsSTQLYMvRTmLESLIaDKlsGgKktLRkelDgki ++gfdI+vPRr+vgPsSTQLYMvRTmLESLIaDK sG+KktLR++l g++ KIAA0068 558 KSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADK-SGSKKTLRSSLEGPT 606 ilkIevFhkkSfywsaLlnlSdslqeccdLSQLWFREFYLEmTMGrkvnk il Ie Fh++Sf++++L+n+S++lq+ccdLSQLWFREF+LE+TMGr KIAA0068 607 ILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGR---- 652 clvrhqhneeckdlitmekRIQFPIEMSMPWILTDhILetkEPSlmEyvL RIQFPIEMSMPWILTDhILetkE S+mEyvL KIAA0068 653 -------------------RIQFPIEMSMPWILTDHILETKEASMMEYVL 683 YpLDLYNDsAyYaltkFkKQFLYDEvEAEVNLCFDQFVYKLseqiFahYK Y LDLYNDsA Yalt+F+KQFLYDE+EAEVNLCFDQFVYKL++qiFa+YK KIAA0068 684 YSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYK 733 qLAgsvLLDKRFraEckrlGviirsyPsanRyEtLLkQRHVQLLGRSiDL +Ags+LLDKR r Eck+ G i P++nRyEtLLkQRHVQLLGRSiDL KIAA0068 734 VMAGSLLLDKRLRSECKNQGATIH-LPPSNRYETLLKQRHVQLLGRSIDL 782 NrlitQRinaallKsldaAIsrFEsedltsIVELemLleiNRlcHkLLsk NrlitQR++aa++Ksl++AI rFEsedltsIVEL++LleiNR++HkLLs KIAA0068 783 NRLITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTHKLLSR 832 vLhsldsFDdlfkEANHnVnaPyGRITLHVFwELNYDFlpNycYNgsTnR +L +ld FD++f+EANHnV+aPyGRITLHVFwELNYDFlpNycYNgsTnR KIAA0068 833 YL-TLDGFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNR 881 FvRtkvvfssrqepqReKPpqvsqyYlwGSKsLnaAysniynaYsqfvGt FvRt +f +qe qR+K p+ ++ Yl GSK Ln Ays iy++Y++fvG+ KIAA0068 882 FVRTVLPF--SQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGP 929 pHfkaicRLLgYQGIAVvldelLKdivkrLlqgkilqyvktlievMPKvC pHf+ icRLLgYQGIAVv++elLK +vk+Llqg+ilqyvktl+evMPK+C KIAA0068 930 PHFQVICRLLGYQGIAVVMEELLK-VVKSLLQGTILQYVKTLMEVMPKIC 978 kLPRseYGSpgvLeYYvhhLedivkYpelKtelfQsLRElGNaIvFClli +LPR+eYGSpg+Le+++h+L+div+Y+elKt fQ LRE+GNaI+FClli KIAA0068 979 RLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAILFCLLI 1028 EqALsQEEvcDLlhAAafqnilPrpyikeaekqekklkrLEakYarlhlv Eq Ls EEvcDLlhAA+fqnilPr+ +ke+e++ +k+krLE kYa+lhlv KIAA0068 1029 EQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKYAPLHLV 1078 eiiekigtddGQaaIAregdLlTkERLCCGLsiFEviLvRiksyLaaDpi ++ie++gt++ Q+aIAregdLlTkERLCCGLs+FEviL+Ri+s+L +Dpi KIAA0068 1079 PLIERLGTPQ-QIAIAREGDLLTKERLCCGLSMFEVILTRIRSFL-DDPI 1126 WtGppPtNGvihvDECvEfhRlwSALQFvyCiPvrddnEvtaEelFGdgL W+Gp P NGv+hvDECvEfhRlwSA+QFvyCiPv+ + E+t+E++FGdgL KIAA0068 1127 WRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVG-THEFTVEQCFGDGL 1175 nWaGctlIvLLGQqRRFevLDFCYHllrVqraDGKDEvikgirLkkMvdR WaGc +IvLLGQqRRF vLDFCYHll+Vq+ DGKDE+ik+++LkkMv+R KIAA0068 1176 HWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVER 1225 IRrFQvLNnqiFiILnkyLkeneddsstVEhVRcFaPPvHpslassa<-* IR+FQ+LN +i IL+kyLk++++++ VEhVRcF+PP+H+slass KIAA0068 1226 IRKFQILNDEIITILDKYLKSGDGEGTPVEHVRCFQPPIHQSLASS- 1271 PF05994.2.ls: domain 1 of 1, from 19 to 1271: score 3391.9, E = 0 *->MtakvTldDAlSNVelLdeLalPDdqPcIEarplsilYraNFDTNFE M a+vTl+DAlSNV+lL+eL+lPD+qPcIE++p+s+lY+ NF TNFE KIAA0068 19 MAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQPNFNTNFE 65 DRnaFVTGIAkYiEeATrHaqlNdmLeEglkhAvmlYTWRcCSRAiPqaK DRnaFVTGIA+YiE+AT+H+++N+mLeEg+++AvmlYTWR+CSRAiPq+K KIAA0068 66 DRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVK 115 sNeQPNRvEIyEktVEVLkPEVsKLlkFMyFqrkAIerFceEVkRLCHaE +NeQPNRvEIyEktVEVL+PEV+KL++FMyFqr AIerFc+EV+RLCHaE KIAA0068 116 CNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAE 165 kRkDFVSEAYLLTLGkFINMFAVLDELKNMKaSvKNDfStyrRAaQFLka +RkDFVSEAYL TLGkFINMFAVLDELKNMK+SvKND+S+y+RAaQFL++ KIAA0068 166 RRKDFVSEAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRK 215 MsDtqavqesQNLSMFLAtqNkIkddlkdqletIeGYEeLLaDvVNICvh M+D+q++qesQNLSMFLA++NkI++ l++qle+I GYEeLLaD+VN Cv+ KIAA0068 216 MADPQSIQESQNLSMFLANHNKITQSLQQQLEVISGYEELLADIVNLCVD 265 mYEtklYLtPeEKHMlvKVmgFgLFLMDgdaaNiaKLDqKKrislsriDk +YE+++YLtP+EKHMl+KVmgFgL+LMDg ++Ni+KLD+KKri+ls+iDk KIAA0068 266 YYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRINLSKIDK 315 iFKtLeVVPLfGDMQIepfayikrSsHYeenkSKWpLsdkesispqvniv FK+L+VVPLfGDMQIe+++yik+S+HYeenkS+W+ ++++ spq+ni+ KIAA0068 316 YFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWT-CTSSGSSPQYNIC 364 eklqqIReDHvkYiselArysNevavtGsGlde.qksDsEnReitdLALr e++ qIReDH+++iselArysN+++vtGsG e qk D+E+R ++dLAL KIAA0068 365 EQMIQIREDHMRFISELARYSNSEVVTGSGRQEaQKTDAEYRKLFDLALQ 414 GlQLLskWsaaVvEvySWKLlhPTdkkdNkeCPeeAEEYERATRYNYtse GlQLLs+Wsa+V+EvySWKL+hPTdk Nk+CP AEEYERATRYNYtse KIAA0068 415 GLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDSAEEYERATRYNYTSE 464 EKfALievIAMIKGLQvllgriEsvlseaiRktiYveLQdFvqltlrEPL EKfAL+evIAMIKGLQvl+gr+Esv++ aiR t+Y++LQdF q+tlrEPL KIAA0068 465 EKFALVEVIAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPL 514 rkAVkkKKdllaSilqsvrdtisDwekgleptdDvkGkkkspaakGdkdp r+A+kkKK+++ S+lq++r+t++Dwe g ep +D pa++G+kdp KIAA0068 515 RQAIKKKKNVIQSVLQAIRKTVCDWETGHEPFND-------PALRGEKDP 557 sggfdIrvPRrtvgPsSTQLYMvRTmLESLIaDKlsGgKktLRkelDgki ++gfdI+vPRr+vgPsSTQLYMvRTmLESLIaDK sG+KktLR++l g++ KIAA0068 558 KSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADK-SGSKKTLRSSLEGPT 606 ilkIevFhkkSfywsaLlnlSdslqeccdLSQLWFREFYLEmTMGrkvnk il Ie Fh++Sf++++L+n+S++lq+ccdLSQLWFREF+LE+TMGr KIAA0068 607 ILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGR---- 652 clvrhqhneeckdlitmekRIQFPIEMSMPWILTDhILetkEPSlmEyvL RIQFPIEMSMPWILTDhILetkE S+mEyvL KIAA0068 653 -------------------RIQFPIEMSMPWILTDHILETKEASMMEYVL 683 YpLDLYNDsAyYaltkFkKQFLYDEvEAEVNLCFDQFVYKLseqiFahYK Y LDLYNDsA Yalt+F+KQFLYDE+EAEVNLCFDQFVYKL++qiFa+YK KIAA0068 684 YSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYK 733 qLAgsvLLDKRFraEckrlGviirsyPsanRyEtLLkQRHVQLLGRSiDL +Ags+LLDKR r Eck+ G i P++nRyEtLLkQRHVQLLGRSiDL KIAA0068 734 VMAGSLLLDKRLRSECKNQGATIH-LPPSNRYETLLKQRHVQLLGRSIDL 782 NrlitQRinaallKsldaAIsrFEsedltsIVELemLleiNRlcHkLLsk NrlitQR++aa++Ksl++AI rFEsedltsIVEL++LleiNR++HkLLs KIAA0068 783 NRLITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTHKLLSR 832 vLhsldsFDdlfkEANHnVnaPyGRITLHVFwELNYDFlpNycYNgsTnR +L +ld FD++f+EANHnV+aPyGRITLHVFwELNYDFlpNycYNgsTnR KIAA0068 833 YL-TLDGFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNR 881 FvRtkvvfssrqepqReKPpqvsqyYlwGSKsLnaAysniynaYsqfvGt FvRt +f +qe qR+K p+ ++ Yl GSK Ln Ays iy++Y++fvG+ KIAA0068 882 FVRTVLPF--SQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGP 929 pHfkaicRLLgYQGIAVvldelLKdivkrLlqgkilqyvktlievMPKvC pHf+ icRLLgYQGIAVv++elLK +vk+Llqg+ilqyvktl+evMPK+C KIAA0068 930 PHFQVICRLLGYQGIAVVMEELLK-VVKSLLQGTILQYVKTLMEVMPKIC 978 kLPRseYGSpgvLeYYvhhLedivkYpelKtelfQsLRElGNaIvFClli +LPR+eYGSpg+Le+++h+L+div+Y+elKt fQ LRE+GNaI+FClli KIAA0068 979 RLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAILFCLLI 1028 EqALsQEEvcDLlhAAafqnilPrpyikeaekqekklkrLEakYarlhlv Eq Ls EEvcDLlhAA+fqnilPr+ +ke+e++ +k+krLE kYa+lhlv KIAA0068 1029 EQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKYAPLHLV 1078 eiiekigtddGQaaIAregdLlTkERLCCGLsiFEviLvRiksyLaaDpi ++ie++gt++ Q+aIAregdLlTkERLCCGLs+FEviL+Ri+s+L +Dpi KIAA0068 1079 PLIERLGTPQ-QIAIAREGDLLTKERLCCGLSMFEVILTRIRSFL-DDPI 1126 WtGppPtNGvihvDECvEfhRlwSALQFvyCiPvrddnEvtaEelFGdgL W+Gp P NGv+hvDECvEfhRlwSA+QFvyCiPv+ + E+t+E++FGdgL KIAA0068 1127 WRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVG-THEFTVEQCFGDGL 1175 nWaGctlIvLLGQqRRFevLDFCYHllrVqraDGKDEvikgirLkkMvdR WaGc +IvLLGQqRRF vLDFCYHll+Vq+ DGKDE+ik+++LkkMv+R KIAA0068 1176 HWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVER 1225 IRrFQvLNnqiFiILnkyLkeneddsstVEhVRcFaPPvHpslassa<-* IR+FQ+LN +i IL+kyLk++++++ VEhVRcF+PP+H+slass KIAA0068 1226 IRKFQILNDEIITILDKYLKSGDGEGTPVEHVRCFQPPIHQSLASS- 1271 //