HUGE

Gene/Protein Characteristic Table for KIAA0069

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00394
Accession No. :	D31885
Description :	ARL-6-interacting protein 1.
HUGO Gene Name :	ADP-ribosylation factor-like 6 interacting protein 1 (ARL6IP1)
Clone Name :	ha01508 [Vector Info]
Flexi ORF Clone :	pF1KSDA0069
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 2272 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1591 bp

Genome contig ID gi51511732r_18610517
PolyA signal sequence
(AATAAA,-29)
+----*----+----*----+----*----+----
GGAAAAAATAAAAAAAGCTGGAATCTTCATGTCTC
Flanking genome sequence
(99967 - 99918)
----+----*----+----*----+----*----+----*----+----*
ACTTTCTTTATAACTTAGCCAATATAATATTTATGATTGGATTTATGAAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 16 r 18710484 18720358 6 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 226 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q15041	8.4e-89	100.0	ADP-ribosylatio...	Homo sapiens
XP_001082004	3.2e-88	99.5	ADP-ribosylatio...	Macaca mulatta
Q5R454	5.3e-88	99.0	ADP-ribosylatio...	Pongo abelii
BAF83826	1.7e-87	99.5	unnamed protein...	Homo sapiens
XP_537908	1.7e-87	98.5	similar to ARL-...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom NULL 42 214 PD352110 NULL

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	NULL	42	214	PD352110	NULL

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1 VRVSVGGLVGEVACACRDCIPET 23 SECONDARY 23

2 65 AWFPPAIMGVVSLVFLIIYYLDP 87 PRIMARY 23

3 93 VSCFVMFLCLADYLVPILAPRIF 115 PRIMARY 23

4 160 YFMTMIVSLAAVAWVGQQVHNLL 182 PRIMARY 23

5 184 TYLIVTSLLLLPGLNQHGIILKY 206 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	VRVSVGGLVGEVACACRDCIPET	23	SECONDARY	23
2	65	AWFPPAIMGVVSLVFLIIYYLDP	87	PRIMARY	23
3	93	VSCFVMFLCLADYLVPILAPRIF	115	PRIMARY	23
4	160	YFMTMIVSLAAVAWVGQQVHNLL	182	PRIMARY	23
5	184	TYLIVTSLLLLPGLNQHGIILKY	206	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 16

Experimental conditions

Panel name	: Stanford G3
Primer_f	: GCAGACTTGAGGTGATGATAG
Primer_r	: CAATGGGCACCACTGTTCACA
PCR product length	: 181 bp
PCR conditions	: 95 °C15 sec68 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1591 bp
Genome contig ID	gi51511732r_18610517
PolyA signal sequence (AATAAA,-29)	+--------+--------+----*----+---- GGAAAAAATAAAAAAAGCTGGAATCTTCATGTCTC
Flanking genome sequence (99967 - 99918)	----+--------+--------+--------+--------+----* ACTTTCTTTATAACTTAGCCAATATAATATTTATGATTGGATTTATGAAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	16	r	18710484	18720358	6	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0069

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information