hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16441079/chunk_1/iprscan-20080501-16441079.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0077 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02985.12.ls HEAT repeat 63.2 7.8e-16 5 PF02985.12.fs HEAT repeat 54.3 3.1e-14 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02985.12.ls 2/5 1133 1170 .. 1 36 [] 15.7 0.16 PF02985.12.ls 3/5 1309 1345 .. 1 36 [] 13.7 0.64 PF02985.12.ls 5/5 1635 1671 .. 1 36 [] 25.4 0.00019 Alignments of top-scoring domains: PF02985.12.ls: domain 2 of 5, from 1133 to 1170: score 15.7, E = 0.16 *->e.ild.ellplllkllnDpdpeVReaAaeaLgalaevl<-* +++l+ + + ++++ ln++ VR++A++a++ ++++l KIAA0077 1133 DrVLPlRAIRFFVENLNHDAIVVRKMAISAVAGILKQL 1170 PF02985.12.ls: domain 3 of 5, from 1309 to 1345: score 13.7, E = 0.64 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + +l+ l p+l +l+ D++++ ++ +ae ++ l++ KIAA0077 1309 DaFLPVLKPHLEHLVADSHESTQRCVAEIIAGLIRGS 1345 PF02985.12.ls: domain 5 of 5, from 1635 to 1671: score 25.4, E = 0.00019 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e++++++ l+++ll+D+ eVRe+Aa +L+ l+++ KIAA0077 1635 EdAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCN 1671 //