hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16460002/chunk_1/iprscan-20080501-16460002.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0078
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF04825.4.ls N terminus of Rad21 / Rec8 like protein    238.8    1.1e-68   1
PF04825.4.fs N terminus of Rad21 / Rec8 like protein    237.0    3.9e-68   1
PF04824.7.fs Conserved region of Rad21 / Rec8 like pr   102.7    2.1e-28   1
PF04824.7.ls Conserved region of Rad21 / Rec8 like pr   104.7    2.6e-28   1
PF02616.5.fs ScpA/B protein                              16.4    0.00013   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF04825.4.fs   1/1       5   115 ..     1   136 []   237.0  3.9e-68
PF04825.4.ls   1/1       5   115 ..     1   136 []   238.8  1.1e-68
PF04824.7.fs   1/1     578   632 ..     1    55 []   102.7  2.1e-28
PF04824.7.ls   1/1     578   632 ..     1    55 []   104.7  2.6e-28
PF02616.5.fs   1/1     583   629 ..   227   283 .]    16.4  0.00013

Alignments of top-scoring domains:
PF04825.4.fs: domain 1 of 1, from 5 to 115: score 237.0, E = 3.9e-68
                   *->MFYshavLskeKGPLakIWLAAiLGtghwekKLkKkqiletdIpesc
                      MFY+h+vLsk +GPLakIWLAA     hw+kKL+K++++e+++++s+
    KIAA0078     5    MFYAHFVLSK-RGPLAKIWLAA-----HWDKKLTKAHVFECNLESSV 45   

                   eeIlnpvlvRvvPerergsevdplALRlsghLLlGVVRiYskKvkYLldD
                   e+I+ p             +v ++ALR+sghLLlGVVRiY +K+kYLl+D
    KIAA0078    46 ESIISP-------------KV-KMALRTSGHLLLGVVRIYHRKAKYLLAD 81   

                   cneallkvkkaFrsgqldfevdlPeenrearvnsnltlp<-*
                   cnea++k+k+aFr+g     vdlPeenrea +n+ +tlp   
    KIAA0078    82 CNEAFIKIKMAFRPGV----VDLPEENREAAYNA-ITLP    115  

PF04825.4.ls: domain 1 of 1, from 5 to 115: score 238.8, E = 1.1e-68
                   *->MFYshavLskeKGPLakIWLAAiLGtghwekKLkKkqiletdIpesc
                      MFY+h+vLsk +GPLakIWLAA     hw+kKL+K++++e+++++s+
    KIAA0078     5    MFYAHFVLSK-RGPLAKIWLAA-----HWDKKLTKAHVFECNLESSV 45   

                   eeIlnpvlvRvvPerergsevdplALRlsghLLlGVVRiYskKvkYLldD
                   e+I+ p             +v ++ALR+sghLLlGVVRiY +K+kYLl+D
    KIAA0078    46 ESIISP-------------KV-KMALRTSGHLLLGVVRIYHRKAKYLLAD 81   

                   cneallkvkkaFrsgqldfevdlPeenrearvnsnltlp<-*
                   cnea++k+k+aFr+g     vdlPeenrea +n+ +tlp   
    KIAA0078    82 CNEAFIKIKMAFRPGV----VDLPEENREAAYNA-ITLP    115  

PF04824.7.fs: domain 1 of 1, from 578 to 632: score 102.7, E = 2.1e-28
                   *->tegeklslsqLpagttRkeAArlFYelLVLktegaIdVkQeePYgdI
                      t+ e++sl++L+++t+Rk+AA++FY++LVLk+++aI+++QeePY+dI
    KIAA0078   578    TGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDI 624  

                   likagPkl<-*
                   + ++gP++   
    KIAA0078   625 IATPGPRF    632  

PF04824.7.ls: domain 1 of 1, from 578 to 632: score 104.7, E = 2.6e-28
                   *->tegeklslsqLpagttRkeAArlFYelLVLktegaIdVkQeePYgdI
                      t+ e++sl++L+++t+Rk+AA++FY++LVLk+++aI+++QeePY+dI
    KIAA0078   578    TGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDI 624  

                   likagPkl<-*
                   + ++gP++   
    KIAA0078   625 IATPGPRF    632  

PF02616.5.fs: domain 1 of 1, from 583 to 629: score 16.4, E = 0.00013
                   *->isFfeLvkdcHHHLDPnhliskkdlVgaFlALLeLannqkVeleQee
                      is+ eL             + +k  +  F + L+L ++q++el Qee
    KIAA0078   583    ISLLELCRN----------TNRKQAAAKFYSFLVLKKQQAIELTQEE 619  

                   ffgdlyiqll<-*
                   +++d++ ++    
    KIAA0078   620 PYSDIIATPG    629  

//