hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16473863/chunk_1/iprscan-20080501-16473863.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0079 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04811.5.ls Sec23/Sec24 trunk domain 469.2 4.7e-138 1 PF04811.5.fs Sec23/Sec24 trunk domain 467.3 1.7e-137 1 PF04815.5.fs Sec23/Sec24 helical domain 160.8 1.2e-46 1 PF04815.5.ls Sec23/Sec24 helical domain 162.8 8.1e-46 1 PF08033.2.fs Sec23/Sec24 beta-sandwich domain 126.5 1.4e-38 1 PF08033.2.ls Sec23/Sec24 beta-sandwich domain 128.3 2e-35 1 PF00626.12.fs Gelsolin repeat 76.8 2e-21 1 PF04810.5.ls Sec23/Sec24 zinc finger 81.4 2.6e-21 1 PF04810.5.fs Sec23/Sec24 zinc finger 79.4 8.6e-21 1 PF00626.12.ls Gelsolin repeat 78.6 1.8e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04810.5.fs 1/1 429 468 .. 1 42 [] 79.4 8.6e-21 PF04810.5.ls 1/1 429 468 .. 1 42 [] 81.4 2.6e-21 PF04811.5.fs 1/1 507 754 .. 1 281 [] 467.3 1.7e-137 PF04811.5.ls 1/1 507 754 .. 1 281 [] 469.2 4.7e-138 PF08033.2.ls 1/1 756 840 .. 1 106 [] 128.3 2e-35 PF08033.2.fs 1/1 756 840 .. 1 106 [] 126.5 1.4e-38 PF04815.5.fs 1/1 852 955 .. 1 108 [] 160.8 1.2e-46 PF04815.5.ls 1/1 852 955 .. 1 108 [] 162.8 8.1e-46 PF00626.12.fs 1/1 969 1044 .. 1 96 [] 76.8 2e-21 PF00626.12.ls 1/1 969 1044 .. 1 96 [] 78.6 1.8e-20 Alignments of top-scoring domains: PF04810.5.fs: domain 1 of 1, from 429 to 468: score 79.4, E = 8.6e-21 *->dPvRCskrrCrAYlNPfcqfddrarrWqCnfCgnrNdvPpdY<-* +P+RC +rC+AY++Pf+qf++++rr+qC+fC++ NdvPp+Y KIAA0079 429 GPLRC--NRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQY 468 PF04810.5.ls: domain 1 of 1, from 429 to 468: score 81.4, E = 2.6e-21 *->dPvRCskrrCrAYlNPfcqfddrarrWqCnfCgnrNdvPpdY<-* +P+RC +rC+AY++Pf+qf++++rr+qC+fC++ NdvPp+Y KIAA0079 429 GPLRC--NRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQY 468 PF04811.5.fs: domain 1 of 1, from 507 to 754: score 467.3, E = 1.7e-137 *->PqPPvFlFvIDVSynAiksGlLaalkesLkqsLdlLPng....dpra P+PP+F+F+IDVSynAi++Gl+ +l+e+Lk+ Ld LP++++ +++ + KIAA0079 507 PSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREggaeESAI 553 lVGfITfDstvHFynlssslcsKsYVFrqpkmlvvsDlqdmFGLgsavrp +VGf+T+++++HFyn++ssl +qp+m+vvsD+ dmF KIAA0079 554 RVGFVTYNKVLHFYNVKSSL-------AQPQMMVVSDVADMF-------- 588 sssggAgngllPlpadrlLvplsecrqvledLLeqLPkDmFpvtagkrpe +Pl+ d++Lv+++e+r+v+++LL+q+P+ mF++t +++e KIAA0079 589 ----------VPLL-DGFLVNVNESRAVITSLLDQIPE-MFADT--RETE 624 ralGpALqaAflLLkavfpntGGkImvFqggLPTvGpGGkLksrldpPiR +++ p++qa++++Lka++ ++Gk+++F+++LP+++++GkLk+r+d+ KIAA0079 625 TVFVPVIQAGMEALKAAE--CAGKLFLFHTSLPIAEAPGKLKNRDDR--- 669 shhdtdKdkaklvkkadkFYksLAkecvaqGhsVDLFafsldYvDvAtlg ++++tdK+k+ +++++ +Y++LAkecvaqG++VDLF+f+++YvDvAtl+ KIAA0079 670 KLINTDKEKTLFQPQTG-AYQTLAKECVAQGCCVDLFLFPNQYVDVATLS 718 qlsrlTGGqvylypsFqytapvDtskFkqdlkRyftrd<-* ++++lTGG+vy+y sFq ++D+++F++dl+R++++ KIAA0079 719 VVPQLTGGSVYKYASFQ--VENDQERFLSDLRRDVQKV 754 PF04811.5.ls: domain 1 of 1, from 507 to 754: score 469.2, E = 4.7e-138 *->PqPPvFlFvIDVSynAiksGlLaalkesLkqsLdlLPng....dpra P+PP+F+F+IDVSynAi++Gl+ +l+e+Lk+ Ld LP++++ +++ + KIAA0079 507 PSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREggaeESAI 553 lVGfITfDstvHFynlssslcsKsYVFrqpkmlvvsDlqdmFGLgsavrp +VGf+T+++++HFyn++ssl +qp+m+vvsD+ dmF KIAA0079 554 RVGFVTYNKVLHFYNVKSSL-------AQPQMMVVSDVADMF-------- 588 sssggAgngllPlpadrlLvplsecrqvledLLeqLPkDmFpvtagkrpe +Pl+ d++Lv+++e+r+v+++LL+q+P+ mF++t +++e KIAA0079 589 ----------VPLL-DGFLVNVNESRAVITSLLDQIPE-MFADT--RETE 624 ralGpALqaAflLLkavfpntGGkImvFqggLPTvGpGGkLksrldpPiR +++ p++qa++++Lka++ ++Gk+++F+++LP+++++GkLk+r+d+ KIAA0079 625 TVFVPVIQAGMEALKAAE--CAGKLFLFHTSLPIAEAPGKLKNRDDR--- 669 shhdtdKdkaklvkkadkFYksLAkecvaqGhsVDLFafsldYvDvAtlg ++++tdK+k+ +++++ +Y++LAkecvaqG++VDLF+f+++YvDvAtl+ KIAA0079 670 KLINTDKEKTLFQPQTG-AYQTLAKECVAQGCCVDLFLFPNQYVDVATLS 718 qlsrlTGGqvylypsFqytapvDtskFkqdlkRyftrd<-* ++++lTGG+vy+y sFq ++D+++F++dl+R++++ KIAA0079 719 VVPQLTGGSVYKYASFQ--VENDQERFLSDLRRDVQKV 754 PF08033.2.ls: domain 1 of 1, from 756 to 840: score 128.3, E = 2e-35 *->gfnAvlrVRtSkglkisgfiGnffsrnkKapsVsdteIGiGgTdlwk gf+Av+rVRtS+g++ +f+G f++ ++ ++++ KIAA0079 756 GFDAVMRVRTSTGIRAVDFFGAFYMS-------NT--------TDVE 787 lpsldpdqsyavefdiddklktpipqdrkqdvyfQfatlYthssGerRiR l++ld d++++vef++dd l+ + + +Q+a+lYt++ G+rR+R KIAA0079 788 LAGLDGDKTVTVEFKHDDRLNE------ESGALLQCALLYTSCAGQRRLR 831 VtTlalpvt<-* +++lal+++ KIAA0079 832 IHNLALNCC 840 PF08033.2.fs: domain 1 of 1, from 756 to 840: score 126.5, E = 1.4e-38 *->gfnAvlrVRtSkglkisgfiGnffsrnkKapsVsdteIGiGgTdlwk gf+Av+rVRtS+g++ +f+G f++ ++ ++++ KIAA0079 756 GFDAVMRVRTSTGIRAVDFFGAFYMS-------NT--------TDVE 787 lpsldpdqsyavefdiddklktpipqdrkqdvyfQfatlYthssGerRiR l++ld d++++vef++dd l+ + + +Q+a+lYt++ G+rR+R KIAA0079 788 LAGLDGDKTVTVEFKHDDRLNE------ESGALLQCALLYTSCAGQRRLR 831 VtTlalpvt<-* +++lal+++ KIAA0079 832 IHNLALNCC 840 PF04815.5.fs: domain 1 of 1, from 852 to 955: score 160.8, E = 1.2e-46 *->qeAiavlmAklAvekaltesslkdardwldnalidiLaaYrkncask +++++++mAk A+ +l+ s+ k +rd+l+ ++++iLa+Yrkncas+ KIAA0079 852 TDTLINYMAKFAYRGVLN-SPVKAVRDTLITQCAQILACYRKNCASP 897 ndpsqliLpecasLkLlPlymlaLlKspalrvgatnnslDeRayarnllr ++++qliLpe ++kLlP+y++++lKs++l++g +++++D+Ray+r+l++ KIAA0079 898 SSAGQLILPE--CMKLLPVYLNCVLKSDVLQPG-AEVTTDDRAYVRQLVT 944 slpldqllkmi<-* s+++++ +++ KIAA0079 945 SMDVTETNVFF 955 PF04815.5.ls: domain 1 of 1, from 852 to 955: score 162.8, E = 8.1e-46 *->qeAiavlmAklAvekaltesslkdardwldnalidiLaaYrkncask +++++++mAk A+ +l+ s+ k +rd+l+ ++++iLa+Yrkncas+ KIAA0079 852 TDTLINYMAKFAYRGVLN-SPVKAVRDTLITQCAQILACYRKNCASP 897 ndpsqliLpecasLkLlPlymlaLlKspalrvgatnnslDeRayarnllr ++++qliLpe ++kLlP+y++++lKs++l++g +++++D+Ray+r+l++ KIAA0079 898 SSAGQLILPE--CMKLLPVYLNCVLKSDVLQPG-AEVTTDDRAYVRQLVT 944 slpldqllkmi<-* s+++++ +++ KIAA0079 945 SMDVTETNVFF 955 PF00626.12.fs: domain 1 of 1, from 969 to 1044: score 76.8, E = 2e-21 *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyhiflWvGkkssqWR +++pp+v++s e l++gd+yLL ng ++flWvG s+q KIAA0079 969 STTEPPAVRASEERLSNGDIYLLENGL------NLFLWVG-ASVQ-- 1006 KagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparFl< + +++++ ++++ +qi ++++ lpv+d+ +++k+ + ++ KIAA0079 1007 -------QGVVQSLFSVSSF---SQITSGLSVLPVLDN-PLSKKVRGLI 1044 -* KIAA0079 - - PF00626.12.ls: domain 1 of 1, from 969 to 1044: score 78.6, E = 1.8e-20 *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyhiflWvGkkssqWR +++pp+v++s e l++gd+yLL ng ++flWvG s+q KIAA0079 969 STTEPPAVRASEERLSNGDIYLLENGL------NLFLWVG-ASVQ-- 1006 KagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparFl< + +++++ ++++ +qi ++++ lpv+d+ +++k+ + ++ KIAA0079 1007 -------QGVVQSLFSVSSF---SQITSGLSVLPVLDN-PLSKKVRGLI 1044 -* KIAA0079 - - //